IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
891	 41.27	+1	938018..938269	+	83	167039566	-	Teth514_0914	-	hypothetical protein
892	 34.85	0	938271..938996	+	241	167039567	-	Teth514_0915	-	Na+/H+ antiporter MnhB subunit-related protein
893	 33.33	0	938993..939358	+	121	167039568	-	Teth514_0916	-	NADH-ubiquinone oxidoreductase, chain 4L
894	 35.46	0	939367..940827	+	486	167039569	-	Teth514_0917	-	NADH dehydrogenase (quinone)
895	 36.19	0	940842..942521	+	559	167039570	-	Teth514_0918	-	NADH dehydrogenase (quinone)
896	 36.65	0	942551..943213	+	220	167039571	-	Teth514_0919	-	hypothetical protein
897	 34.91	0	943372..944892	+	506	167039572	-	Teth514_0920	-	thymidylate synthase complementing protein ThyX
898	 28.89	-1	944910..945224	+	104	167039573	-	Teth514_0921	-	MazG nucleotide pyrophosphohydrolase
899	 30.60	0	945303..945485	+	60	167039574	-	Teth514_0922	-	hypothetical protein
900	 36.23	0	945501..945776	+	91	167039575	-	Teth514_0923	-	coat F domain-containing protein
901	 37.70	0	945866..946780	+	304	167039576	-	Teth514_0924	-	thioredoxin reductase
902	 36.28	0	946809..947792	-	327	167039577	-	Teth514_0925	-	peptidoglycan binding domain-containing protein
903	 31.21	0	947919..948578	+	219	167039578	-	Teth514_0926	-	cell wall hydrolase/autolysin
904	 32.07	0	948662..949294	+	210	167039579	-	Teth514_0927	-	HAD family hydrolase
905	 33.97	0	949313..950257	+	314	167039580	-	Teth514_0928	-	ATPase
906	 27.62	-1	950250..951404	+	384	167039581	-	Teth514_0929	-	hypothetical protein
907	 30.83	0	951373..953565	+	730	167039582	-	Teth514_0930	-	transglutaminase domain-containing protein
908	 37.92	0	953654..954067	+	137	167039583	-	Teth514_0931	-	osmosensitive K+ channel histidine kinase-like protein
909	 29.80	-1	954077..954472	-	131	167039584	-	Teth514_0932	-	transport-associated
910	 36.83	0	954953..956212	+	419	167039585	-	Teth514_0933	-	transposase IS116/IS110/IS902 family protein
911	 37.05	0	956485..957318	+	277	167039586	-	Teth514_0934	-	hypothetical protein
912	 33.33	0	957308..958498	+	396	167039587	-	Teth514_0935	-	YbbR family protein
913	 36.25	0	958702..959763	+	353	167039588	-	Teth514_0936	-	butyrate kinase
914	 38.13	0	959777..960673	+	298	167039589	-	Teth514_0937	-	phosphate butyryltransferase
915	 38.11	0	960699..961766	+	355	167039590	-	Teth514_0938	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
916	 35.96	0	961893..962960	+	355	167039591	-	Teth514_0939	-	butyrate kinase
917	 34.67	0	962975..963649	+	224	167039592	-	Teth514_0940	-	hypothetical protein
918	 32.03	0	963646..963876	+	76	167039593	-	Teth514_0941	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
919	 38.58	+1	963892..964959	+	355	167039594	-	Teth514_0942	-	2-ketoisovalerate ferredoxin reductase
920	 38.53	+1	964959..965708	+	249	167039595	-	Teth514_0943	-	thiamine pyrophosphate binding domain-containing protein
921	 35.30	0	965711..966268	+	185	167039596	-	Teth514_0944	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
922	 36.48	0	966307..967197	+	296	167039597	-	Teth514_0945	-	phosphate butyryltransferase
923	 38.12	0	967226..968959	+	577	167039598	-	Teth514_0946	-	thiamine pyrophosphate binding domain-containing protein
924	 36.28	0	968966..969541	+	191	167039599	-	Teth514_0947	-	indolepyruvate oxidoreductase subunit B
925	 32.17	0	969663..970262	+	199	167039600	-	Teth514_0948	-	phospholipid/glycerol acyltransferase
926	 37.43	0	970331..971674	+	447	167039601	-	Teth514_0949	-	phosphoglucosamine mutase
927	 36.84	0	971935..973761	+	608	167039602	-	Teth514_0950	-	D-fructose-6-phosphate amidotransferase
928	 37.18	0	974229..974618	+	129	167039603	-	Teth514_0951	-	hypothetical protein
929	 32.68	0	974621..975544	-	307	167039604	-	Teth514_0952	-	ATP dependent DNA ligase
930	 34.81	0	975558..976370	-	270	167039605	-	Teth514_0953	-	Ku domain-containing protein
931	 34.20	0	976503..977771	+	422	167039606	-	Teth514_0954	-	peptidoglycan binding domain-containing protein
932	 32.70	0	977865..978494	-	209	167039607	-	Teth514_0955	-	hypothetical protein
933	 27.08	-1	978632..978919	+	95	167039608	-	Teth514_0956	-	hypothetical protein
934	 37.77	0	979036..980679	+	547	167039609	-	Teth514_0957	-	hydroxylamine reductase
935	 30.33	-1	980750..981148	-	132	167039610	-	Teth514_0958	-	helix-turn-helix domain-containing protein
936	 32.26	0	981326..981511	+	61	167039611	-	Teth514_0959	-	hypothetical protein
937	 33.61	0	981810..982175	+	121	167039612	-	Teth514_0960	-	hypothetical protein
938	 34.77	0	982271..982687	+	138	167039613	-	Teth514_0961	-	holo-acyl-carrier-protein synthase
939	 35.94	0	982650..984182	+	510	167039614	-	Teth514_0962	-	carbohydrate kinase, YjeF related protein
940	 28.57	-1	984197..985204	+	335	167039615	-	Teth514_0963	-	Outer membrane lipoprotein-sorting protein-like protein
941	 32.48	0	985226..986392	+	388	167039616	-	Teth514_0964	-	alanine racemase
942	 36.96	0	986482..986757	+	91	167039617	-	Teth514_0965	-	CopG family transcriptional regulator
943	 34.47	0	986760..987110	+	116	167039618	-	Teth514_0966	-	transcriptional modulator of MazE/toxin, MazF
944	 35.22	0	987438..988283	+	281	167039619	-	Teth514_0967	-	hypothetical protein
945	 39.54	+1	988299..989120	+	273	167039620	-	Teth514_0968	-	transketolase domain-containing protein
946	 41.15	+1	989121..990041	+	306	167039621	-	Teth514_0969	-	transketolase, central region
947	 37.60	0	990070..990585	-	171	167039622	-	Teth514_0970	-	ferredoxin domain-containing protein
948	 34.38	0	990769..992013	+	414	167039623	-	Teth514_0971	-	6-phosphofructokinase
949	 32.60	0	992027..993391	-	454	167039624	-	Teth514_0972	-	Na+/H+ antiporter NhaC
950	 43.40	+2	993649..993807	-	52	167039625	-	Teth514_0973	-	rubredoxin-type Fe(Cys)4 protein
951	 39.80	+1	993893..995191	-	432	167039626	-	Teth514_0974	-	thiamine biosynthesis protein ThiC
952	 32.95	0	995708..997000	+	430	167039627	-	Teth514_0975	-	homoserine dehydrogenase
953	 38.86	+1	997040..998323	+	427	167039628	-	Teth514_0976	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
954	 35.24	0	998344..999444	+	366	167039629	-	Teth514_0977	-	homoserine O-acetyltransferase
955	 34.39	0	999542..1000678	+	378	167039630	-	Teth514_0978	-	oxidoreductase domain-containing protein
956	 34.85	0	1000723..1002105	+	460	167039631	-	Teth514_0979	-	NOL1/NOP2/sun family RNA methylase
957	 34.38	0	1002214..1010877	+	2887	167039632	-	Teth514_0980	-	putative carbohydrate binding
958	 33.64	0	1011318..1012295	+	325	167039633	-	Teth514_0981	-	ABC transporter related
959	 32.49	0	1012261..1012968	+	235	167039634	-	Teth514_0982	-	ABC-2 type transporter
960	 34.41	0	1012980..1014368	+	462	167039635	-	Teth514_0983	-	ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like protein
961	 28.57	-1	1014365..1015267	+	300	167039636	-	Teth514_0984	-	hypothetical protein
962	 32.55	0	1015995..1017014	+	339	167039637	-	Teth514_0985	-	periplasmic binding protein/LacI transcriptional regulator
963	 34.43	0	1017073..1017894	+	273	167039638	-	Teth514_0986	-	xylose isomerase domain-containing protein
964	 36.56	0	1017920..1019098	+	392	167039639	-	Teth514_0987	-	ABC-type sugar transport system periplasmic component-like protein
965	 36.06	0	1019227..1020399	+	390	167039640	-	Teth514_0988	-	oxidoreductase domain-containing protein
966	 30.60	0	1020488..1021987	+	499	167039641	-	Teth514_0989	-	ABC transporter related
967	 35.37	0	1021971..1022951	+	326	167039642	-	Teth514_0990	-	monosaccharide-transporting ATPase
968	 31.91	0	1022996..1023910	+	304	167039643	-	Teth514_0991	-	xylose isomerase domain-containing protein
969	 39.40	+1	1023990..1024928	+	312	167039644	-	Teth514_0992	-	ROK family glucokinase
970	 32.64	0	1024956..1026113	+	385	167039645	-	Teth514_0993	-	oxidoreductase domain-containing protein
971	 32.65	0	1028275..1028568	-	97	167039646	-	Teth514_0996	-	HEPN domain-containing protein
972	 33.91	0	1028552..1028899	-	115	167039647	-	Teth514_0997	-	DNA polymerase beta subunit
973	 34.21	0	1029044..1029616	-	190	167039648	-	Teth514_0998	-	hypothetical protein
974	 32.90	0	1029956..1031098	+	380	167039649	-	Teth514_0999	-	histidine--tRNA ligase
975	 34.11	0	1031100..1031741	+	213	167039650	-	Teth514_1000	-	ATP phosphoribosyltransferase catalytic subunit
976	 36.84	0	1031743..1033026	+	427	167039651	-	Teth514_1001	-	histidinol dehydrogenase
977	 32.39	0	1033028..1034083	+	351	167039652	-	Teth514_1002	-	histidinol-phosphate aminotransferase
978	 37.26	0	1034080..1034664	+	194	167039653	-	Teth514_1003	-	imidazoleglycerol-phosphate dehydratase
979	 34.31	0	1034726..1035337	+	203	167039654	-	Teth514_1004	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
980	 32.34	0	1035328..1036035	+	235	167039655	-	Teth514_1005	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
981	 38.19	0	1036036..1036797	+	253	167039656	-	Teth514_1006	-	imidazoleglycerol phosphate synthase, cyclase subunit
982	 33.94	0	1036820..1037479	+	219	167039657	-	Teth514_1007	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
983	 38.57	+1	1037512..1038753	-	413	167039658	-	Teth514_1008	-	serine hydroxymethyltransferase
984	 33.65	0	1039083..1040018	-	311	167039659	-	Teth514_1009	-	membrane dipeptidase
985	 34.96	0	1040156..1041565	+	469	167039660	-	Teth514_1010	-	LmbE family protein
986	 28.82	-1	1041578..1042663	-	361	167039661	-	Teth514_1011	-	spore germination protein
987	 31.28	0	1042718..1043644	-	308	167039662	-	Teth514_1012	-	Na+/Pi-cotransporter
988	 32.22	0	1043772..1046102	+	776	167039663	-	Teth514_1013	-	nucleotidyl transferase
989	 25.45	-2	1046267..1046545	+	92	167039664	-	Teth514_1014	-	hypothetical protein
990	 28.52	-1	1046542..1047102	+	186	167039665	-	Teth514_1015	-	CRISPR-associated Cas4 family protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.