IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
775	 35.25	0	830706..831071	+	121	167039450	-	Teth514_0796	-	hypothetical protein
776	 40.04	+1	831349..832899	+	516	167039451	-	Teth514_0797	-	carboxyl transferase
777	 37.98	0	832912..833169	+	85	167039452	-	Teth514_0798	-	hypothetical protein
778	 38.60	+1	833187..833585	+	132	167039453	-	Teth514_0799	-	biotin/lipoyl attachment domain-containing protein
779	 36.93	0	833722..834249	+	175	167039454	-	Teth514_0800	-	membrane protein-like protein
780	 36.07	0	834297..835064	+	255	167039455	-	Teth514_0801	-	pantothenate kinase
781	 31.98	0	835071..836180	-	369	167039456	-	Teth514_0802	-	spore germination protein
782	 33.98	0	836277..837812	+	511	167039457	-	Teth514_0803	-	GerA spore germination protein
783	 35.11	0	837814..838998	+	394	167039458	-	Teth514_0804	-	spore germination B3 GerAC family protein
784	 25.78	-2	839003..839227	+	74	167039459	-	Teth514_0805	-	hypothetical protein
785	 33.52	0	839343..839867	+	174	167039460	-	Teth514_0806	-	hypothetical protein
786	 32.78	0	839872..840780	+	302	167039461	-	Teth514_0807	-	hypothetical protein
787	 37.92	0	840794..841882	+	362	167039462	-	Teth514_0808	-	shikimate/quinate 5-dehydrogenase
788	 34.81	0	842047..842520	+	157	167039463	-	Teth514_0809	-	transcription elongation factor GreA
789	 35.87	0	842540..844039	+	499	167039464	-	Teth514_0810	-	lysyl-tRNA synthetase
790	 38.27	0	844432..844998	+	188	167039465	-	Teth514_0811	-	GTP cyclohydrolase I
791	 36.16	0	845011..845823	+	270	167039466	-	Teth514_0812	-	dihydropteroate synthase
792	 32.34	0	845820..846320	+	166	167039467	-	Teth514_0813	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
793	 33.33	0	846324..846692	+	122	167039468	-	Teth514_0814	-	putative 6-pyruvoyl tetrahydropterin synthase
794	 36.22	0	846703..847395	+	230	167039469	-	Teth514_0815	-	sugar fermentation stimulation protein A
795	 34.08	0	847499..849496	+	665	167039470	-	Teth514_0816	-	peptidase S9 prolyl oligopeptidase
796	 35.68	0	849533..850171	-	212	167039471	-	Teth514_0817	-	hypothetical protein
797	 33.77	0	850318..850545	+	75	167039472	-	Teth514_0818	-	hypothetical protein
798	 37.25	0	850566..851993	+	475	167039473	-	Teth514_0819	-	aminotransferase class-III
799	 29.01	-1	852015..852500	+	161	167039474	-	Teth514_0820	-	hypothetical protein
800	 38.05	0	852679..854991	+	770	167039475	-	Teth514_0821	-	ribonucleotide-diphosphate reductase subunit alpha
801	 31.95	0	855206..856870	+	554	167039476	-	Teth514_0822	-	diguanylate cyclase
802	 29.91	-1	857091..859049	+	652	167039477	-	Teth514_0823	-	transcriptional antiterminator, BglG
803	 32.67	0	859036..859485	+	149	167039478	-	Teth514_0824	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
804	 38.97	+1	859527..860573	+	348	167039479	-	Teth514_0825	-	PTS system, fructose subfamily, IIC subunit
805	 33.97	0	860638..860949	+	103	167039480	-	Teth514_0826	-	PTS system, fructose-specific, IIB subunnit
806	 35.42	0	861130..862851	+	573	167039481	-	Teth514_0827	-	phosphoenolpyruvate-protein phosphotransferase
807	 36.27	0	862970..865009	+	679	167039482	-	Teth514_0828	-	elongation factor G
808	 37.08	0	865457..866869	+	470	167039483	-	Teth514_0829	-	RNA-directed DNA polymerase (Reverse transcriptase)
809	 34.24	0	867028..868239	+	403	167039484	-	Teth514_0830	-	malate dehydrogenase
810	 28.12	-1	868265..868456	+	63	167039485	-	Teth514_0831	-	hypothetical protein
811	 31.37	0	868629..869087	+	152	167039486	-	Teth514_0832	-	transcriptional repressor, CtsR
812	 33.72	0	869102..869617	+	171	167039487	-	Teth514_0833	-	UvrB/UvrC protein
813	 33.43	0	869627..870646	+	339	167039488	-	Teth514_0834	-	ATP:guanido phosphotransferase
814	 36.80	0	870659..873109	+	816	167039489	-	Teth514_0835	-	ATPase
815	 36.46	0	873191..874564	+	457	167039490	-	Teth514_0836	-	DNA repair protein RadA
816	 35.10	0	874870..875265	-	131	167039491	-	Teth514_0837	-	hypothetical protein
817	 33.88	0	875549..876652	+	367	167039492	-	Teth514_0838	-	PilT domain-containing protein
818	 33.04	0	876734..877417	+	227	167039493	-	Teth514_0839	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
819	 32.77	0	877484..878728	+	414	167039494	-	Teth514_0840	-	PGAP1 family protein
820	 33.53	0	878721..879218	+	165	167039495	-	Teth514_0841	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
821	 36.08	0	879263..880975	+	570	167039496	-	Teth514_0842	-	prolyl-tRNA synthetase
822	 37.22	0	881069..881248	+	59	167039497	-	Teth514_0843	-	hypothetical protein
823	 33.81	0	881351..882808	+	485	167039498	-	Teth514_0844	-	glutamyl-tRNA synthetase
824	 36.64	0	883057..883722	+	221	167039499	-	Teth514_0845	-	serine O-acetyltransferase
825	 32.98	0	883709..885109	+	466	167039500	-	Teth514_0846	-	cysteinyl-tRNA synthetase
826	 34.23	0	885191..885523	+	110	167039501	-	Teth514_0847	-	hypothetical protein
827	 34.41	0	885533..886276	+	247	167039502	-	Teth514_0848	-	RNA methyltransferase
828	 33.74	0	886288..886782	+	164	167039503	-	Teth514_0849	-	hypothetical protein
829	 37.21	0	886863..887507	+	214	167039504	-	Teth514_0850	-	RNA polymerase factor sigma-70
830	 45.55	+2	887786..888988	+	400	167039505	-	Teth514_0851	-	elongation factor Tu
831	 32.05	0	889351..889506	+	51	167039506	-	Teth514_0853	-	preprotein translocase, SecE subunit
832	 36.19	0	889582..890106	+	174	167039507	-	Teth514_0854	-	transcription antitermination protein NusG
833	 40.66	+1	890153..890575	+	140	167039508	-	Teth514_0855	-	ribosomal protein L11
834	 36.22	0	890622..891314	+	230	167039509	-	Teth514_0856	-	50S ribosomal protein L1
835	 39.33	+1	891498..892031	+	177	167039510	-	Teth514_0857	-	ribosomal protein L10
836	 38.10	0	892069..892446	+	125	167039511	-	Teth514_0858	-	ribosomal protein L7/L12
837	 36.78	0	892673..896389	+	1238	167039512	-	Teth514_0859	-	DNA-directed RNA polymerase subunit beta
838	 37.62	0	896513..899986	+	1157	167039513	-	Teth514_0860	-	DNA-directed RNA polymerase subunit beta'
839	 37.65	0	900082..900336	+	84	167039514	-	Teth514_0861	-	putative ribosomal protein L7Ae-like
840	 40.80	+1	900364..900765	+	133	167039515	-	Teth514_0862	-	30S ribosomal protein S12
841	 36.94	0	900845..901315	+	156	167039516	-	Teth514_0863	-	30S ribosomal protein S7
842	 37.92	0	901365..903434	+	689	167039517	-	Teth514_0864	-	translation elongation factor G
843	 46.05	+2	903449..904651	+	400	167039518	-	Teth514_0865	-	elongation factor Tu
844	 33.98	0	904843..905151	+	102	167039519	-	Teth514_0866	-	30S ribosomal protein S10
845	 36.33	0	905235..905867	+	210	167039520	-	Teth514_0867	-	50S ribosomal protein L3
846	 37.20	0	905885..906505	+	206	167039521	-	Teth514_0868	-	50S ribosomal protein L4
847	 34.01	0	906505..906798	+	97	167039522	-	Teth514_0869	-	ribosomal protein L25/L23
848	 39.13	+1	906822..907649	+	275	167039523	-	Teth514_0870	-	50S ribosomal protein L2
849	 35.82	0	907672..907953	+	93	167039524	-	Teth514_0871	-	ribosomal protein S19
850	 41.37	+1	907971..908306	+	111	167039525	-	Teth514_0872	-	50S ribosomal protein L22
851	 37.99	0	908320..908985	+	221	167039526	-	Teth514_0873	-	30S ribosomal protein S3
852	 41.15	+1	908989..909423	+	144	167039527	-	Teth514_0874	-	50S ribosomal protein L16
853	 34.76	0	909413..909622	+	69	167039528	-	Teth514_0875	-	50S ribosomal protein L29
854	 33.33	0	909640..909894	+	84	167039529	-	Teth514_0876	-	ribosomal protein S17
855	 37.13	0	909916..910284	+	122	167039530	-	Teth514_0877	-	ribosomal protein L14
856	 37.96	0	910297..910620	+	107	167039531	-	Teth514_0878	-	50S ribosomal protein L24
857	 35.37	0	910644..911183	+	179	167039532	-	Teth514_0879	-	50S ribosomal protein L5
858	 36.56	0	911200..911385	+	61	167039533	-	Teth514_0880	-	30S ribosomal protein S14
859	 35.59	0	911404..911802	+	132	167039534	-	Teth514_0881	-	ribosomal protein S8
860	 36.10	0	911825..912367	+	180	167039535	-	Teth514_0882	-	50S ribosomal protein L6
861	 35.52	0	912379..912744	+	121	167039536	-	Teth514_0883	-	50S ribosomal protein L18
862	 38.69	+1	912761..913264	+	167	167039537	-	Teth514_0884	-	ribosomal protein S5
863	 38.74	+1	913292..913735	+	147	167039538	-	Teth514_0885	-	ribosomal protein L15
864	 34.84	0	913737..914993	+	418	167039539	-	Teth514_0886	-	preprotein translocase subunit SecY
865	 35.47	0	915008..915661	+	217	167039540	-	Teth514_0887	-	adenylate kinase
866	 35.88	0	915658..916404	+	248	167039541	-	Teth514_0888	-	methionine aminopeptidase, type I
867	 36.33	0	916420..916686	+	88	167039542	-	Teth514_0889	-	hypothetical protein
868	 37.90	0	916711..916929	+	72	167039543	-	Teth514_0890	-	translation initiation factor IF-1
869	 31.21	0	916919..917059	+	46	167039544	-	Teth514_0891	-	ribosomal protein L36
870	 36.86	0	917071..917439	+	122	167039545	-	Teth514_0892	-	30S ribosomal protein S13
871	 41.48	+1	917458..917850	+	130	167039546	-	Teth514_0893	-	30S ribosomal protein S11
872	 36.07	0	917863..918483	+	206	167039547	-	Teth514_0894	-	30S ribosomal protein S4
873	 36.29	0	918532..919479	+	315	167039548	-	Teth514_0895	-	DNA-directed RNA polymerase subunit alpha
874	 39.23	+1	919493..919831	+	112	167039549	-	Teth514_0896	-	ribosomal protein L17
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.