IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
729	 40.05	+1	773683..774471	-	262	167039404	-	Teth514_0748	-	dehydrogenase, E1 component
730	 37.23	0	775073..776485	+	470	167039405	-	Teth514_0749	-	RNA-directed DNA polymerase (Reverse transcriptase)
731	 38.99	+1	776656..778386	-	576	167039406	-	Teth514_0750	-	Fis family GAF modulated sigma54 specific transcriptional regulator
732	 29.75	-1	779703..780929	+	408	167039407	-	Teth514_0752	-	ROK family protein
733	 36.51	0	781054..782343	+	429	167039408	-	Teth514_0753	-	extracellular solute-binding protein
734	 30.26	-1	782410..783384	+	324	167039409	-	Teth514_0754	-	binding-protein-dependent transport systems inner membrane component
735	 34.21	0	783566..784597	-	343	167039410	-	Teth514_0755	-	integrase catalytic subunit
736	 32.97	0	784720..785553	+	277	167039411	-	Teth514_0756	-	binding-protein-dependent transport systems inner membrane component
737	 32.68	0	785593..787425	+	610	167039412	-	Teth514_0757	-	dextranase
738	 31.14	0	787443..788534	+	363	167039413	-	Teth514_0758	-	glycoside hydrolase 15-related
739	 31.98	0	788524..790224	+	566	167039414	-	Teth514_0759	-	hypothetical protein
740	 32.61	0	790620..790895	+	91	167039415	-	Teth514_0760	-	transposase IS3/IS911 family protein
741	 33.73	0	790949..791458	+	169	167039416	-	Teth514_0761	-	integrase catalytic subunit
742	 34.70	0	791481..791699	-	72	167039417	-	Teth514_0762	-	hypothetical protein
743	 32.56	0	791743..791871	-	42	167039418	-	Teth514_0763	-	hypothetical protein
744	 31.58	0	792105..792389	-	94	167039419	-	Teth514_0764	-	hypothetical protein
745	 27.69	-1	792414..792608	-	64	167039420	-	Teth514_0765	-	hypothetical protein
746	 33.05	0	792867..793562	+	231	167039421	-	Teth514_0766	-	two component transcriptional regulator
747	 31.05	0	793555..794910	+	451	167039422	-	Teth514_0767	-	integral membrane sensor signal transduction histidine kinase
748	 34.54	0	794985..795233	+	82	167039423	-	Teth514_0768	-	hypothetical protein
749	 32.79	0	795978..796343	+	121	167039424	-	Teth514_0769	-	regulatory protein, ArsR
750	 35.95	0	796364..798463	+	699	167039425	-	Teth514_0770	-	heavy metal translocating P-type ATPase
751	 36.85	0	798634..799572	+	312	167039426	-	Teth514_0771	-	cysteine synthase A
752	 35.41	0	799649..800803	+	384	167039427	-	Teth514_0772	-	cysteine desulfurase
753	 33.86	0	800800..801930	+	376	167039428	-	Teth514_0773	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
754	 37.01	0	802001..804394	+	797	167039429	-	Teth514_0774	-	copper-translocating P-type ATPase
755	 32.08	0	804745..805380	-	211	167039430	-	Teth514_0775	-	diguanylate phosphodiesterase
756	 32.63	0	805477..806187	+	236	167039431	-	Teth514_0776	-	cell wall hydrolase/autolysin
757	 30.38	-1	806184..806522	+	112	167039432	-	Teth514_0777	-	phage holin
758	 38.01	0	806772..808673	+	633	167039433	-	Teth514_0778	-	hypothetical protein
759	 39.14	+1	808971..810158	-	395	167039434	-	Teth514_0779	-	pyridoxal phosphate-dependent acyltransferase, putative
760	 39.64	+1	810178..811224	-	348	167039435	-	Teth514_0780	-	L-threonine 3-dehydrogenase
761	 38.59	+1	811449..814964	+	1171	167039436	-	Teth514_0781	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
762	 30.86	0	814991..815152	-	53	167039437	-	Teth514_0782	-	hypothetical protein
763	 33.09	0	815309..815716	+	135	167039438	-	Teth514_0783	-	hypothetical protein
764	 36.82	0	815723..816583	-	286	167039439	-	Teth514_0784	-	hypothetical protein
765	 35.11	0	816580..817482	-	300	167039440	-	Teth514_0785	-	ABC transporter related
766	 32.21	0	817487..818647	-	386	167039441	-	Teth514_0786	-	putative transmembrane anti-sigma factor
767	 31.74	0	818650..819150	-	166	167039442	-	Teth514_0787	-	RNA polymerase sigma factor SigX
768	 32.70	0	819326..820267	+	313	167039443	-	Teth514_0788	-	hypothetical protein
769	 31.54	0	821076..823421	+	781	167039444	-	Teth514_0790	-	phosphoprotein phosphatase
770	 30.21	-1	823582..824958	+	458	167039445	-	Teth514_0791	-	tRNA(Ile)-lysidine synthetase
771	 32.60	0	824984..825529	+	181	167039446	-	Teth514_0792	-	hypoxanthine phosphoribosyltransferase
772	 38.89	+1	825601..827436	+	611	167039447	-	Teth514_0793	-	ATP-dependent metalloprotease FtsH
773	 29.72	-1	827610..828992	+	460	167039448	-	Teth514_0794	-	PAS/PAC sensor signal transduction histidine kinase
774	 38.91	+1	829018..830685	+	555	167039449	-	Teth514_0795	-	formate--tetrahydrofolate ligase
775	 35.25	0	830706..831071	+	121	167039450	-	Teth514_0796	-	hypothetical protein
776	 40.04	+1	831349..832899	+	516	167039451	-	Teth514_0797	-	carboxyl transferase
777	 37.98	0	832912..833169	+	85	167039452	-	Teth514_0798	-	hypothetical protein
778	 38.60	+1	833187..833585	+	132	167039453	-	Teth514_0799	-	biotin/lipoyl attachment domain-containing protein
779	 36.93	0	833722..834249	+	175	167039454	-	Teth514_0800	-	membrane protein-like protein
780	 36.07	0	834297..835064	+	255	167039455	-	Teth514_0801	-	pantothenate kinase
781	 31.98	0	835071..836180	-	369	167039456	-	Teth514_0802	-	spore germination protein
782	 33.98	0	836277..837812	+	511	167039457	-	Teth514_0803	-	GerA spore germination protein
783	 35.11	0	837814..838998	+	394	167039458	-	Teth514_0804	-	spore germination B3 GerAC family protein
784	 25.78	-2	839003..839227	+	74	167039459	-	Teth514_0805	-	hypothetical protein
785	 33.52	0	839343..839867	+	174	167039460	-	Teth514_0806	-	hypothetical protein
786	 32.78	0	839872..840780	+	302	167039461	-	Teth514_0807	-	hypothetical protein
787	 37.92	0	840794..841882	+	362	167039462	-	Teth514_0808	-	shikimate/quinate 5-dehydrogenase
788	 34.81	0	842047..842520	+	157	167039463	-	Teth514_0809	-	transcription elongation factor GreA
789	 35.87	0	842540..844039	+	499	167039464	-	Teth514_0810	-	lysyl-tRNA synthetase
790	 38.27	0	844432..844998	+	188	167039465	-	Teth514_0811	-	GTP cyclohydrolase I
791	 36.16	0	845011..845823	+	270	167039466	-	Teth514_0812	-	dihydropteroate synthase
792	 32.34	0	845820..846320	+	166	167039467	-	Teth514_0813	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
793	 33.33	0	846324..846692	+	122	167039468	-	Teth514_0814	-	putative 6-pyruvoyl tetrahydropterin synthase
794	 36.22	0	846703..847395	+	230	167039469	-	Teth514_0815	-	sugar fermentation stimulation protein A
795	 34.08	0	847499..849496	+	665	167039470	-	Teth514_0816	-	peptidase S9 prolyl oligopeptidase
796	 35.68	0	849533..850171	-	212	167039471	-	Teth514_0817	-	hypothetical protein
797	 33.77	0	850318..850545	+	75	167039472	-	Teth514_0818	-	hypothetical protein
798	 37.25	0	850566..851993	+	475	167039473	-	Teth514_0819	-	aminotransferase class-III
799	 29.01	-1	852015..852500	+	161	167039474	-	Teth514_0820	-	hypothetical protein
800	 38.05	0	852679..854991	+	770	167039475	-	Teth514_0821	-	ribonucleotide-diphosphate reductase subunit alpha
801	 31.95	0	855206..856870	+	554	167039476	-	Teth514_0822	-	diguanylate cyclase
802	 29.91	-1	857091..859049	+	652	167039477	-	Teth514_0823	-	transcriptional antiterminator, BglG
803	 32.67	0	859036..859485	+	149	167039478	-	Teth514_0824	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
804	 38.97	+1	859527..860573	+	348	167039479	-	Teth514_0825	-	PTS system, fructose subfamily, IIC subunit
805	 33.97	0	860638..860949	+	103	167039480	-	Teth514_0826	-	PTS system, fructose-specific, IIB subunnit
806	 35.42	0	861130..862851	+	573	167039481	-	Teth514_0827	-	phosphoenolpyruvate-protein phosphotransferase
807	 36.27	0	862970..865009	+	679	167039482	-	Teth514_0828	-	elongation factor G
808	 37.08	0	865457..866869	+	470	167039483	-	Teth514_0829	-	RNA-directed DNA polymerase (Reverse transcriptase)
809	 34.24	0	867028..868239	+	403	167039484	-	Teth514_0830	-	malate dehydrogenase
810	 28.12	-1	868265..868456	+	63	167039485	-	Teth514_0831	-	hypothetical protein
811	 31.37	0	868629..869087	+	152	167039486	-	Teth514_0832	-	transcriptional repressor, CtsR
812	 33.72	0	869102..869617	+	171	167039487	-	Teth514_0833	-	UvrB/UvrC protein
813	 33.43	0	869627..870646	+	339	167039488	-	Teth514_0834	-	ATP:guanido phosphotransferase
814	 36.80	0	870659..873109	+	816	167039489	-	Teth514_0835	-	ATPase
815	 36.46	0	873191..874564	+	457	167039490	-	Teth514_0836	-	DNA repair protein RadA
816	 35.10	0	874870..875265	-	131	167039491	-	Teth514_0837	-	hypothetical protein
817	 33.88	0	875549..876652	+	367	167039492	-	Teth514_0838	-	PilT domain-containing protein
818	 33.04	0	876734..877417	+	227	167039493	-	Teth514_0839	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
819	 32.77	0	877484..878728	+	414	167039494	-	Teth514_0840	-	PGAP1 family protein
820	 33.53	0	878721..879218	+	165	167039495	-	Teth514_0841	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
821	 36.08	0	879263..880975	+	570	167039496	-	Teth514_0842	-	prolyl-tRNA synthetase
822	 37.22	0	881069..881248	+	59	167039497	-	Teth514_0843	-	hypothetical protein
823	 33.81	0	881351..882808	+	485	167039498	-	Teth514_0844	-	glutamyl-tRNA synthetase
824	 36.64	0	883057..883722	+	221	167039499	-	Teth514_0845	-	serine O-acetyltransferase
825	 32.98	0	883709..885109	+	466	167039500	-	Teth514_0846	-	cysteinyl-tRNA synthetase
826	 34.23	0	885191..885523	+	110	167039501	-	Teth514_0847	-	hypothetical protein
827	 34.41	0	885533..886276	+	247	167039502	-	Teth514_0848	-	RNA methyltransferase
828	 33.74	0	886288..886782	+	164	167039503	-	Teth514_0849	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.