IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 28.63	-1	733848..734102	+	84	167039361	-	Teth514_0703	-	XRE family transcriptional regulator
687	 36.19	0	734107..734316	+	69	167039362	-	Teth514_0704	-	hypothetical protein
688	 35.83	0	734476..734916	+	146	167039363	-	Teth514_0705	-	hypothetical protein
689	 24.27	-2	734961..735302	+	113	167039364	-	Teth514_0706	-	hypothetical protein
690	 27.32	-1	735357..735905	+	182	167039365	-	Teth514_0707	-	hypothetical protein
691	 27.78	-1	735882..736547	-	221	167039366	-	Teth514_0708	-	hypothetical protein
692	 33.56	0	736800..737234	+	144	167039367	-	Teth514_0709	-	hypothetical protein
693	 37.54	0	737392..737724	+	110	167039368	-	Teth514_0710	-	hypothetical protein
694	 41.96	+1	737721..737975	+	84	167039369	-	Teth514_0711	-	hypothetical protein
695	 32.67	0	737992..738291	+	99	167039370	-	Teth514_0712	-	hypothetical protein
696	 38.92	+1	738291..738899	+	202	167039371	-	Teth514_0713	-	hypothetical protein
697	 40.31	+1	738886..740721	+	611	167039372	-	Teth514_0714	-	Type IV secretory pathway VirB4 components-like protein
698	 43.85	+2	740684..742252	+	522	167039373	-	Teth514_0715	-	hypothetical protein
699	 34.42	0	742349..742624	+	91	167039374	-	Teth514_0716	-	hypothetical protein
700	 41.33	+1	742725..744350	+	541	167039375	-	Teth514_0717	-	peptidase M23B
701	 39.44	+1	744361..745425	+	354	167039376	-	Teth514_0718	-	hypothetical protein
702	 38.76	+1	745440..745973	+	177	167039377	-	Teth514_0719	-	hypothetical protein
703	 39.74	+1	745957..746502	+	181	167039378	-	Teth514_0720	-	SAF domain-containing protein
704	 36.54	0	746508..747224	+	238	167039379	-	Teth514_0721	-	ATPase involved in chromosome partitioning-like protein
705	 38.26	0	747193..748350	+	385	167039380	-	Teth514_0722	-	type II secretion system protein E
706	 32.89	0	748352..749257	+	301	167039381	-	Teth514_0723	-	type II secretion system protein
707	 32.93	0	749254..750003	+	249	167039382	-	Teth514_0724	-	hypothetical protein
708	 36.04	0	750037..750258	+	73	167039383	-	Teth514_0725	-	hypothetical protein
709	 41.33	+1	750359..750658	+	99	167039384	-	Teth514_0726	-	hypothetical protein
710	 29.41	-1	750655..751062	+	135	167039385	-	Teth514_0727	-	hypothetical protein
711	 28.57	-1	751062..751880	+	272	167039386	-	Teth514_0728	-	hypothetical protein
712	 39.32	+1	752389..753090	+	233	167039387	-	Teth514_0729	-	hypothetical protein
713	 35.99	0	753182..756451	+	1089	167039388	-	Teth514_0730	-	peptidoglycan binding domain-containing protein
714	 32.30	0	756448..756834	+	128	167039389	-	Teth514_0731	-	peptidase A24A, prepilin type IV
715	 37.76	0	756864..757382	+	172	167039390	-	Teth514_0732	-	metal dependent phosphohydrolase
716	 38.39	+1	757375..758403	+	342	167039391	-	Teth514_0733	-	hypothetical protein
717	 33.01	0	758862..759170	+	102	167039392	-	Teth514_0734	-	hypothetical protein
718	 29.45	-1	759390..760238	+	282	167039393	-	Teth514_0735	-	radical SAM domain-containing protein
719	 28.55	-1	760360..761445	+	361	167039394	-	Teth514_0736	-	hypothetical protein
720	 34.78	0	761930..762553	+	207	167039395	-	Teth514_0737	-	hypothetical protein
721	 37.57	0	762522..764195	+	557	167039396	-	Teth514_0738	-	Type IV secretory pathway VirD4 components-like protein
722	 31.10	0	765730..767163	-	477	167039397	-	Teth514_0739	-	AAA family ATPase
723	 30.62	0	767586..768137	+	183	167039398	-	Teth514_0740	-	hypothetical protein
724	 33.16	0	768879..769451	-	190	167039399	-	Teth514_0741	-	hypothetical protein
725	 27.33	-1	770031..770330	+	99	167039400	-	Teth514_0743	-	hypothetical protein
726	 31.33	0	770522..770821	+	99	167039401	-	Teth514_0744	-	hypothetical protein
727	 33.94	0	770907..771569	+	220	167039402	-	Teth514_0745	-	hypothetical protein
728	 29.54	-1	771760..771996	-	78	167039403	-	Teth514_0746	-	putative methyl-accepting chemotaxis sensory transducer
729	 40.05	+1	773683..774471	-	262	167039404	-	Teth514_0748	-	dehydrogenase, E1 component
730	 37.23	0	775073..776485	+	470	167039405	-	Teth514_0749	-	RNA-directed DNA polymerase (Reverse transcriptase)
731	 38.99	+1	776656..778386	-	576	167039406	-	Teth514_0750	-	Fis family GAF modulated sigma54 specific transcriptional regulator
732	 29.75	-1	779703..780929	+	408	167039407	-	Teth514_0752	-	ROK family protein
733	 36.51	0	781054..782343	+	429	167039408	-	Teth514_0753	-	extracellular solute-binding protein
734	 30.26	-1	782410..783384	+	324	167039409	-	Teth514_0754	-	binding-protein-dependent transport systems inner membrane component
735	 34.21	0	783566..784597	-	343	167039410	-	Teth514_0755	-	integrase catalytic subunit
736	 32.97	0	784720..785553	+	277	167039411	-	Teth514_0756	-	binding-protein-dependent transport systems inner membrane component
737	 32.68	0	785593..787425	+	610	167039412	-	Teth514_0757	-	dextranase
738	 31.14	0	787443..788534	+	363	167039413	-	Teth514_0758	-	glycoside hydrolase 15-related
739	 31.98	0	788524..790224	+	566	167039414	-	Teth514_0759	-	hypothetical protein
740	 32.61	0	790620..790895	+	91	167039415	-	Teth514_0760	-	transposase IS3/IS911 family protein
741	 33.73	0	790949..791458	+	169	167039416	-	Teth514_0761	-	integrase catalytic subunit
742	 34.70	0	791481..791699	-	72	167039417	-	Teth514_0762	-	hypothetical protein
743	 32.56	0	791743..791871	-	42	167039418	-	Teth514_0763	-	hypothetical protein
744	 31.58	0	792105..792389	-	94	167039419	-	Teth514_0764	-	hypothetical protein
745	 27.69	-1	792414..792608	-	64	167039420	-	Teth514_0765	-	hypothetical protein
746	 33.05	0	792867..793562	+	231	167039421	-	Teth514_0766	-	two component transcriptional regulator
747	 31.05	0	793555..794910	+	451	167039422	-	Teth514_0767	-	integral membrane sensor signal transduction histidine kinase
748	 34.54	0	794985..795233	+	82	167039423	-	Teth514_0768	-	hypothetical protein
749	 32.79	0	795978..796343	+	121	167039424	-	Teth514_0769	-	regulatory protein, ArsR
750	 35.95	0	796364..798463	+	699	167039425	-	Teth514_0770	-	heavy metal translocating P-type ATPase
751	 36.85	0	798634..799572	+	312	167039426	-	Teth514_0771	-	cysteine synthase A
752	 35.41	0	799649..800803	+	384	167039427	-	Teth514_0772	-	cysteine desulfurase
753	 33.86	0	800800..801930	+	376	167039428	-	Teth514_0773	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
754	 37.01	0	802001..804394	+	797	167039429	-	Teth514_0774	-	copper-translocating P-type ATPase
755	 32.08	0	804745..805380	-	211	167039430	-	Teth514_0775	-	diguanylate phosphodiesterase
756	 32.63	0	805477..806187	+	236	167039431	-	Teth514_0776	-	cell wall hydrolase/autolysin
757	 30.38	-1	806184..806522	+	112	167039432	-	Teth514_0777	-	phage holin
758	 38.01	0	806772..808673	+	633	167039433	-	Teth514_0778	-	hypothetical protein
759	 39.14	+1	808971..810158	-	395	167039434	-	Teth514_0779	-	pyridoxal phosphate-dependent acyltransferase, putative
760	 39.64	+1	810178..811224	-	348	167039435	-	Teth514_0780	-	L-threonine 3-dehydrogenase
761	 38.59	+1	811449..814964	+	1171	167039436	-	Teth514_0781	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
762	 30.86	0	814991..815152	-	53	167039437	-	Teth514_0782	-	hypothetical protein
763	 33.09	0	815309..815716	+	135	167039438	-	Teth514_0783	-	hypothetical protein
764	 36.82	0	815723..816583	-	286	167039439	-	Teth514_0784	-	hypothetical protein
765	 35.11	0	816580..817482	-	300	167039440	-	Teth514_0785	-	ABC transporter related
766	 32.21	0	817487..818647	-	386	167039441	-	Teth514_0786	-	putative transmembrane anti-sigma factor
767	 31.74	0	818650..819150	-	166	167039442	-	Teth514_0787	-	RNA polymerase sigma factor SigX
768	 32.70	0	819326..820267	+	313	167039443	-	Teth514_0788	-	hypothetical protein
769	 31.54	0	821076..823421	+	781	167039444	-	Teth514_0790	-	phosphoprotein phosphatase
770	 30.21	-1	823582..824958	+	458	167039445	-	Teth514_0791	-	tRNA(Ile)-lysidine synthetase
771	 32.60	0	824984..825529	+	181	167039446	-	Teth514_0792	-	hypoxanthine phosphoribosyltransferase
772	 38.89	+1	825601..827436	+	611	167039447	-	Teth514_0793	-	ATP-dependent metalloprotease FtsH
773	 29.72	-1	827610..828992	+	460	167039448	-	Teth514_0794	-	PAS/PAC sensor signal transduction histidine kinase
774	 38.91	+1	829018..830685	+	555	167039449	-	Teth514_0795	-	formate--tetrahydrofolate ligase
775	 35.25	0	830706..831071	+	121	167039450	-	Teth514_0796	-	hypothetical protein
776	 40.04	+1	831349..832899	+	516	167039451	-	Teth514_0797	-	carboxyl transferase
777	 37.98	0	832912..833169	+	85	167039452	-	Teth514_0798	-	hypothetical protein
778	 38.60	+1	833187..833585	+	132	167039453	-	Teth514_0799	-	biotin/lipoyl attachment domain-containing protein
779	 36.93	0	833722..834249	+	175	167039454	-	Teth514_0800	-	membrane protein-like protein
780	 36.07	0	834297..835064	+	255	167039455	-	Teth514_0801	-	pantothenate kinase
781	 31.98	0	835071..836180	-	369	167039456	-	Teth514_0802	-	spore germination protein
782	 33.98	0	836277..837812	+	511	167039457	-	Teth514_0803	-	GerA spore germination protein
783	 35.11	0	837814..838998	+	394	167039458	-	Teth514_0804	-	spore germination B3 GerAC family protein
784	 25.78	-2	839003..839227	+	74	167039459	-	Teth514_0805	-	hypothetical protein
785	 33.52	0	839343..839867	+	174	167039460	-	Teth514_0806	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.