IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
626	 31.73	0	670468..671652	+	394	167039301	-	Teth514_0642	-	hypothetical protein
627	 28.15	-1	671699..672277	-	192	167039302	-	Teth514_0643	-	hypothetical protein
628	 29.76	-1	672453..672983	+	176	167039303	-	Teth514_0644	-	RNA polymerase sigma factor SigY
629	 26.62	-1	672980..673396	+	138	167039304	-	Teth514_0645	-	hypothetical protein
630	 30.63	0	673401..673733	+	110	167039305	-	Teth514_0646	-	hypothetical protein
631	 28.02	-1	673753..673959	+	68	167039306	-	Teth514_0647	-	hypothetical protein
632	 29.34	-1	673961..674887	+	308	167039307	-	Teth514_0648	-	ABC transporter related
633	 25.40	-2	674874..675629	+	251	167039308	-	Teth514_0649	-	hypothetical protein
634	 35.38	0	675791..677503	+	570	167039309	-	Teth514_0650	-	phosphotransferase domain-containing protein
635	 45.40	+2	677720..679120	-	466	167039310	-	Teth514_0651	-	glutamate synthase (NADPH), homotetrameric
636	 38.91	+1	679107..679985	-	292	167039311	-	Teth514_0652	-	ferredoxin--NADP(+) reductase subunit alpha
637	 43.15	+2	680180..681238	-	352	167039312	-	Teth514_0653	-	alcohol dehydrogenase
638	 40.02	+1	681654..682865	+	403	167039313	-	Teth514_0654	-	iron-containing alcohol dehydrogenase
639	 47.50	+2	683131..684873	+	580	167039314	-	Teth514_0655	-	putative PAS/PAC sensor protein
640	 46.90	+2	684857..686035	+	392	167039315	-	Teth514_0656	-	stage II sporulation E family protein
641	 35.56	0	686413..687447	+	344	167039316	-	Teth514_0657	-	N-acetyl-gamma-glutamyl-phosphate reductase
642	 38.00	0	687489..688709	+	406	167039317	-	Teth514_0658	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
643	 38.89	+1	688706..689605	+	299	167039318	-	Teth514_0659	-	acetylglutamate kinase
644	 37.89	0	689592..690776	+	394	167039319	-	Teth514_0660	-	acetylornithine and succinylornithine aminotransferase
645	 35.76	0	690778..691848	+	356	167039320	-	Teth514_0661	-	carbamoyl phosphate synthase small subunit
646	 36.16	0	691835..695053	+	1072	167039321	-	Teth514_0662	-	carbamoyl-phosphate synthase, large subunit
647	 39.50	+1	695067..696299	+	410	167039322	-	Teth514_0663	-	argininosuccinate synthase
648	 36.35	0	696280..697605	+	441	167039323	-	Teth514_0664	-	argininosuccinate lyase
649	 44.84	+2	697903..700656	+	917	167039324	-	Teth514_0665	-	calcium-translocating P-type ATPase, PMCA-type
650	 28.46	-1	700710..700976	-	88	167039325	-	Teth514_0666	-	hypothetical protein
651	 38.62	+1	701208..701963	+	251	167039326	-	Teth514_0667	-	phosphoglycerate mutase 1 family protein
652	 35.63	0	702055..702576	+	173	167039327	-	Teth514_0668	-	Ferritin, Dps family protein
653	 33.89	0	704657..705013	+	118	167039328	-	Teth514_0670	-	hypothetical protein
654	 34.41	0	704985..705539	+	184	167039329	-	Teth514_0671	-	heptaprenyl diphosphate synthase component I
655	 31.68	0	705553..706521	+	322	167039330	-	Teth514_0672	-	polyprenyl synthetase
656	 31.70	0	706572..707609	+	345	167039331	-	Teth514_0673	-	ApbE family lipoprotein
657	 30.45	0	707631..708566	+	311	167039332	-	Teth514_0674	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
658	 38.13	0	708704..709120	+	138	167039333	-	Teth514_0675	-	FMN-binding domain-containing protein
659	 34.89	0	709267..711060	+	597	167039334	-	Teth514_0676	-	hypothetical protein
660	 33.84	0	711068..711859	+	263	167039335	-	Teth514_0677	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
661	 34.53	0	711866..712948	+	360	167039336	-	Teth514_0678	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
662	 34.09	0	712938..714257	+	439	167039337	-	Teth514_0679	-	major facilitator transporter
663	 39.15	+1	714277..714654	-	125	167039338	-	Teth514_0680	-	desulfoferrodoxin
664	 34.74	0	714854..715066	+	70	167039339	-	Teth514_0681	-	hypothetical protein
665	 36.79	0	715139..716557	+	472	167039340	-	Teth514_0682	-	aspartate ammonia-lyase
666	 36.19	0	716560..717786	+	408	167039341	-	Teth514_0683	-	small GTP-binding protein
667	 34.79	0	717797..719035	-	412	167039342	-	Teth514_0684	-	major facilitator transporter
668	 27.31	-1	719054..720364	-	436	167039343	-	Teth514_0685	-	TPR repeat-containing protein
669	 34.68	0	720517..722004	+	495	167039344	-	Teth514_0686	-	MazG family protein
670	 34.06	0	722082..722357	+	91	167039345	-	Teth514_0687	-	histone family protein DNA-binding protein
671	 32.52	0	722412..722657	+	81	167039346	-	Teth514_0688	-	RNA-binding S4 domain-containing protein
672	 36.70	0	722713..723693	+	326	167039347	-	Teth514_0689	-	SpoIID/LytB domain-containing protein
673	 33.33	0	723793..724089	+	98	167039348	-	Teth514_0690	-	YabP family protein
674	 28.94	-1	724198..724857	+	219	167039349	-	Teth514_0691	-	hypothetical protein
675	 29.89	-1	724873..725511	+	212	167039350	-	Teth514_0692	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
676	 31.85	0	725515..727134	-	539	167039351	-	Teth514_0693	-	putative manganese-dependent inorganic pyrophosphatase
677	 24.95	-2	727212..727688	+	158	167039352	-	Teth514_0694	-	hypothetical protein
678	 28.47	-1	727757..728044	+	95	167039353	-	Teth514_0695	-	septum formation initiator
679	 34.28	0	728132..728554	+	140	167039354	-	Teth514_0696	-	hypothetical protein
680	 34.22	0	728634..729539	+	301	167039355	-	Teth514_0697	-	Ppx/GppA phosphatase
681	 34.98	0	729848..731368	-	506	167039356	-	Teth514_0698	-	recombinase
682	 28.25	-1	731474..731827	-	117	167039357	-	Teth514_0699	-	hypothetical protein
683	 35.63	0	731829..732263	-	144	167039358	-	Teth514_0700	-	DNA binding domain-containing protein
684	 31.50	0	732281..732607	-	108	167039359	-	Teth514_0701	-	hypothetical protein
685	 36.71	0	733251..733664	-	137	167039360	-	Teth514_0702	-	XRE family transcriptional regulator
686	 28.63	-1	733848..734102	+	84	167039361	-	Teth514_0703	-	XRE family transcriptional regulator
687	 36.19	0	734107..734316	+	69	167039362	-	Teth514_0704	-	hypothetical protein
688	 35.83	0	734476..734916	+	146	167039363	-	Teth514_0705	-	hypothetical protein
689	 24.27	-2	734961..735302	+	113	167039364	-	Teth514_0706	-	hypothetical protein
690	 27.32	-1	735357..735905	+	182	167039365	-	Teth514_0707	-	hypothetical protein
691	 27.78	-1	735882..736547	-	221	167039366	-	Teth514_0708	-	hypothetical protein
692	 33.56	0	736800..737234	+	144	167039367	-	Teth514_0709	-	hypothetical protein
693	 37.54	0	737392..737724	+	110	167039368	-	Teth514_0710	-	hypothetical protein
694	 41.96	+1	737721..737975	+	84	167039369	-	Teth514_0711	-	hypothetical protein
695	 32.67	0	737992..738291	+	99	167039370	-	Teth514_0712	-	hypothetical protein
696	 38.92	+1	738291..738899	+	202	167039371	-	Teth514_0713	-	hypothetical protein
697	 40.31	+1	738886..740721	+	611	167039372	-	Teth514_0714	-	Type IV secretory pathway VirB4 components-like protein
698	 43.85	+2	740684..742252	+	522	167039373	-	Teth514_0715	-	hypothetical protein
699	 34.42	0	742349..742624	+	91	167039374	-	Teth514_0716	-	hypothetical protein
700	 41.33	+1	742725..744350	+	541	167039375	-	Teth514_0717	-	peptidase M23B
701	 39.44	+1	744361..745425	+	354	167039376	-	Teth514_0718	-	hypothetical protein
702	 38.76	+1	745440..745973	+	177	167039377	-	Teth514_0719	-	hypothetical protein
703	 39.74	+1	745957..746502	+	181	167039378	-	Teth514_0720	-	SAF domain-containing protein
704	 36.54	0	746508..747224	+	238	167039379	-	Teth514_0721	-	ATPase involved in chromosome partitioning-like protein
705	 38.26	0	747193..748350	+	385	167039380	-	Teth514_0722	-	type II secretion system protein E
706	 32.89	0	748352..749257	+	301	167039381	-	Teth514_0723	-	type II secretion system protein
707	 32.93	0	749254..750003	+	249	167039382	-	Teth514_0724	-	hypothetical protein
708	 36.04	0	750037..750258	+	73	167039383	-	Teth514_0725	-	hypothetical protein
709	 41.33	+1	750359..750658	+	99	167039384	-	Teth514_0726	-	hypothetical protein
710	 29.41	-1	750655..751062	+	135	167039385	-	Teth514_0727	-	hypothetical protein
711	 28.57	-1	751062..751880	+	272	167039386	-	Teth514_0728	-	hypothetical protein
712	 39.32	+1	752389..753090	+	233	167039387	-	Teth514_0729	-	hypothetical protein
713	 35.99	0	753182..756451	+	1089	167039388	-	Teth514_0730	-	peptidoglycan binding domain-containing protein
714	 32.30	0	756448..756834	+	128	167039389	-	Teth514_0731	-	peptidase A24A, prepilin type IV
715	 37.76	0	756864..757382	+	172	167039390	-	Teth514_0732	-	metal dependent phosphohydrolase
716	 38.39	+1	757375..758403	+	342	167039391	-	Teth514_0733	-	hypothetical protein
717	 33.01	0	758862..759170	+	102	167039392	-	Teth514_0734	-	hypothetical protein
718	 29.45	-1	759390..760238	+	282	167039393	-	Teth514_0735	-	radical SAM domain-containing protein
719	 28.55	-1	760360..761445	+	361	167039394	-	Teth514_0736	-	hypothetical protein
720	 34.78	0	761930..762553	+	207	167039395	-	Teth514_0737	-	hypothetical protein
721	 37.57	0	762522..764195	+	557	167039396	-	Teth514_0738	-	Type IV secretory pathway VirD4 components-like protein
722	 31.10	0	765730..767163	-	477	167039397	-	Teth514_0739	-	AAA family ATPase
723	 30.62	0	767586..768137	+	183	167039398	-	Teth514_0740	-	hypothetical protein
724	 33.16	0	768879..769451	-	190	167039399	-	Teth514_0741	-	hypothetical protein
725	 27.33	-1	770031..770330	+	99	167039400	-	Teth514_0743	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.