IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
585	 30.32	-1	624798..625526	+	242	167039260	-	Teth514_0601	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
586	 30.52	0	625594..625806	+	70	167039261	-	Teth514_0602	-	hypothetical protein
587	 36.39	0	625817..627421	+	534	167039262	-	Teth514_0603	-	GerA spore germination protein
588	 31.17	0	627405..628514	+	369	167039263	-	Teth514_0604	-	spore germination protein
589	 33.25	0	628498..629649	+	383	167039264	-	Teth514_0605	-	spore germination B3 GerAC family protein
590	 33.33	0	629719..630354	+	211	167039265	-	Teth514_0606	-	hypothetical protein
591	 40.37	+1	630447..631157	+	236	167039266	-	Teth514_0607	-	cell wall hydrolase, SleB
592	 31.91	0	631167..632501	+	444	167039267	-	Teth514_0608	-	peptidase
593	 38.89	+1	632567..632764	+	65	167039268	-	Teth514_0609	-	hypothetical protein
594	 35.19	0	632897..633976	+	359	167039269	-	Teth514_0610	-	D-alanine--D-alanine ligase
595	 32.15	0	634004..634426	+	140	167039270	-	Teth514_0611	-	hypothetical protein
596	 37.30	0	634428..636116	+	562	167039271	-	Teth514_0612	-	arginyl-tRNA synthetase
597	 33.33	0	636172..636816	+	214	167039272	-	Teth514_0613	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
598	 33.51	0	637810..638376	+	188	167039273	-	Teth514_0614	-	glutamine amidotransferase of anthranilate synthase
599	 34.18	0	638389..639693	+	434	167039274	-	Teth514_0615	-	para-aminobenzoate synthase, subunit I
600	 32.67	0	639723..640481	+	252	167039275	-	Teth514_0616	-	aminotransferase, class IV
601	 36.39	0	640547..640840	-	97	167039276	-	Teth514_0617	-	FMN-binding domain-containing protein
602	 31.21	0	640956..642227	+	423	167039277	-	Teth514_0618	-	major facilitator transporter
603	 48.60	+2	642401..643363	-	320	167039278	-	Teth514_0619	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
604	 49.42	+2	643353..644378	-	341	167039279	-	Teth514_0620	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
605	 42.44	+2	644391..645323	-	310	167039280	-	Teth514_0621	-	binding-protein-dependent transport systems inner membrane component
606	 37.79	0	645335..646255	-	306	167039281	-	Teth514_0622	-	binding-protein-dependent transport systems inner membrane component
607	 43.70	+2	646370..648028	-	552	167039282	-	Teth514_0623	-	4-phytase
608	 38.37	+1	648886..649560	+	224	167039283	-	Teth514_0624	-	hypothetical protein
609	 37.30	0	649611..650744	+	377	167039284	-	Teth514_0625	-	aldo/keto reductase
610	 31.39	0	651021..652304	+	427	167039285	-	Teth514_0626	-	NLP/P60 protein
611	 36.77	0	652326..654944	-	872	167039286	-	Teth514_0627	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
612	 36.31	0	655251..655721	+	156	167039287	-	Teth514_0628	-	methylated-DNA--protein-cysteine methyltransferase
613	 22.88	-2	655756..655908	+	50	167039288	-	Teth514_0629	-	hypothetical protein
614	 32.21	0	656064..656507	+	147	167039289	-	Teth514_0630	-	transcriptional regulator, TrmB
615	 35.09	0	656618..658843	+	741	167039290	-	Teth514_0631	-	ABC transporter related
616	 37.63	0	658840..660723	+	627	167039291	-	Teth514_0632	-	ABC transporter related
617	 36.46	0	660960..661598	+	212	167039292	-	Teth514_0633	-	putative proton-coupled thiamine transporter YuaJ
618	 31.10	0	661844..662380	+	178	167039293	-	Teth514_0634	-	phosphoesterase, PA-phosphatase related
619	 36.72	0	662987..665674	+	895	167039294	-	Teth514_0635	-	magnesium-translocating P-type ATPase
620	 29.78	-1	665862..666620	+	252	167039295	-	Teth514_0636	-	putative GAF sensor protein
621	 31.20	0	666925..667626	+	233	167039296	-	Teth514_0637	-	hypothetical protein
622	 28.59	-1	668124..668735	+	203	167039297	-	Teth514_0638	-	hypothetical protein
623	 30.62	0	668945..669349	+	134	167039298	-	Teth514_0639	-	hypothetical protein
624	 29.33	-1	669379..670002	+	207	167039299	-	Teth514_0640	-	hypothetical protein
625	 32.42	0	670109..670327	-	72	167039300	-	Teth514_0641	-	hypothetical protein
626	 31.73	0	670468..671652	+	394	167039301	-	Teth514_0642	-	hypothetical protein
627	 28.15	-1	671699..672277	-	192	167039302	-	Teth514_0643	-	hypothetical protein
628	 29.76	-1	672453..672983	+	176	167039303	-	Teth514_0644	-	RNA polymerase sigma factor SigY
629	 26.62	-1	672980..673396	+	138	167039304	-	Teth514_0645	-	hypothetical protein
630	 30.63	0	673401..673733	+	110	167039305	-	Teth514_0646	-	hypothetical protein
631	 28.02	-1	673753..673959	+	68	167039306	-	Teth514_0647	-	hypothetical protein
632	 29.34	-1	673961..674887	+	308	167039307	-	Teth514_0648	-	ABC transporter related
633	 25.40	-2	674874..675629	+	251	167039308	-	Teth514_0649	-	hypothetical protein
634	 35.38	0	675791..677503	+	570	167039309	-	Teth514_0650	-	phosphotransferase domain-containing protein
635	 45.40	+2	677720..679120	-	466	167039310	-	Teth514_0651	-	glutamate synthase (NADPH), homotetrameric
636	 38.91	+1	679107..679985	-	292	167039311	-	Teth514_0652	-	ferredoxin--NADP(+) reductase subunit alpha
637	 43.15	+2	680180..681238	-	352	167039312	-	Teth514_0653	-	alcohol dehydrogenase
638	 40.02	+1	681654..682865	+	403	167039313	-	Teth514_0654	-	iron-containing alcohol dehydrogenase
639	 47.50	+2	683131..684873	+	580	167039314	-	Teth514_0655	-	putative PAS/PAC sensor protein
640	 46.90	+2	684857..686035	+	392	167039315	-	Teth514_0656	-	stage II sporulation E family protein
641	 35.56	0	686413..687447	+	344	167039316	-	Teth514_0657	-	N-acetyl-gamma-glutamyl-phosphate reductase
642	 38.00	0	687489..688709	+	406	167039317	-	Teth514_0658	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
643	 38.89	+1	688706..689605	+	299	167039318	-	Teth514_0659	-	acetylglutamate kinase
644	 37.89	0	689592..690776	+	394	167039319	-	Teth514_0660	-	acetylornithine and succinylornithine aminotransferase
645	 35.76	0	690778..691848	+	356	167039320	-	Teth514_0661	-	carbamoyl phosphate synthase small subunit
646	 36.16	0	691835..695053	+	1072	167039321	-	Teth514_0662	-	carbamoyl-phosphate synthase, large subunit
647	 39.50	+1	695067..696299	+	410	167039322	-	Teth514_0663	-	argininosuccinate synthase
648	 36.35	0	696280..697605	+	441	167039323	-	Teth514_0664	-	argininosuccinate lyase
649	 44.84	+2	697903..700656	+	917	167039324	-	Teth514_0665	-	calcium-translocating P-type ATPase, PMCA-type
650	 28.46	-1	700710..700976	-	88	167039325	-	Teth514_0666	-	hypothetical protein
651	 38.62	+1	701208..701963	+	251	167039326	-	Teth514_0667	-	phosphoglycerate mutase 1 family protein
652	 35.63	0	702055..702576	+	173	167039327	-	Teth514_0668	-	Ferritin, Dps family protein
653	 33.89	0	704657..705013	+	118	167039328	-	Teth514_0670	-	hypothetical protein
654	 34.41	0	704985..705539	+	184	167039329	-	Teth514_0671	-	heptaprenyl diphosphate synthase component I
655	 31.68	0	705553..706521	+	322	167039330	-	Teth514_0672	-	polyprenyl synthetase
656	 31.70	0	706572..707609	+	345	167039331	-	Teth514_0673	-	ApbE family lipoprotein
657	 30.45	0	707631..708566	+	311	167039332	-	Teth514_0674	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
658	 38.13	0	708704..709120	+	138	167039333	-	Teth514_0675	-	FMN-binding domain-containing protein
659	 34.89	0	709267..711060	+	597	167039334	-	Teth514_0676	-	hypothetical protein
660	 33.84	0	711068..711859	+	263	167039335	-	Teth514_0677	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
661	 34.53	0	711866..712948	+	360	167039336	-	Teth514_0678	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
662	 34.09	0	712938..714257	+	439	167039337	-	Teth514_0679	-	major facilitator transporter
663	 39.15	+1	714277..714654	-	125	167039338	-	Teth514_0680	-	desulfoferrodoxin
664	 34.74	0	714854..715066	+	70	167039339	-	Teth514_0681	-	hypothetical protein
665	 36.79	0	715139..716557	+	472	167039340	-	Teth514_0682	-	aspartate ammonia-lyase
666	 36.19	0	716560..717786	+	408	167039341	-	Teth514_0683	-	small GTP-binding protein
667	 34.79	0	717797..719035	-	412	167039342	-	Teth514_0684	-	major facilitator transporter
668	 27.31	-1	719054..720364	-	436	167039343	-	Teth514_0685	-	TPR repeat-containing protein
669	 34.68	0	720517..722004	+	495	167039344	-	Teth514_0686	-	MazG family protein
670	 34.06	0	722082..722357	+	91	167039345	-	Teth514_0687	-	histone family protein DNA-binding protein
671	 32.52	0	722412..722657	+	81	167039346	-	Teth514_0688	-	RNA-binding S4 domain-containing protein
672	 36.70	0	722713..723693	+	326	167039347	-	Teth514_0689	-	SpoIID/LytB domain-containing protein
673	 33.33	0	723793..724089	+	98	167039348	-	Teth514_0690	-	YabP family protein
674	 28.94	-1	724198..724857	+	219	167039349	-	Teth514_0691	-	hypothetical protein
675	 29.89	-1	724873..725511	+	212	167039350	-	Teth514_0692	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
676	 31.85	0	725515..727134	-	539	167039351	-	Teth514_0693	-	putative manganese-dependent inorganic pyrophosphatase
677	 24.95	-2	727212..727688	+	158	167039352	-	Teth514_0694	-	hypothetical protein
678	 28.47	-1	727757..728044	+	95	167039353	-	Teth514_0695	-	septum formation initiator
679	 34.28	0	728132..728554	+	140	167039354	-	Teth514_0696	-	hypothetical protein
680	 34.22	0	728634..729539	+	301	167039355	-	Teth514_0697	-	Ppx/GppA phosphatase
681	 34.98	0	729848..731368	-	506	167039356	-	Teth514_0698	-	recombinase
682	 28.25	-1	731474..731827	-	117	167039357	-	Teth514_0699	-	hypothetical protein
683	 35.63	0	731829..732263	-	144	167039358	-	Teth514_0700	-	DNA binding domain-containing protein
684	 31.50	0	732281..732607	-	108	167039359	-	Teth514_0701	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.