IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
528	 34.77	0	563418..564743	+	441	167039203	-	Teth514_0544	-	integrase catalytic subunit
529	 34.08	0	564761..565561	+	266	167039204	-	Teth514_0545	-	AAA ATPase
530	 43.70	+2	565963..567621	+	552	167039205	-	Teth514_0546	-	4-phytase
531	 37.57	0	567736..568656	+	306	167039206	-	Teth514_0547	-	binding-protein-dependent transport systems inner membrane component
532	 42.55	+2	568668..569600	+	310	167039207	-	Teth514_0548	-	binding-protein-dependent transport systems inner membrane component
533	 48.93	+2	569613..570638	+	341	167039208	-	Teth514_0549	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
534	 48.60	+2	570628..571590	+	320	167039209	-	Teth514_0550	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
535	 36.90	0	572517..573302	+	261	167039210	-	Teth514_0551	-	ribonuclease PH
536	 31.32	0	573262..573858	+	198	167039211	-	Teth514_0552	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
537	 33.13	0	573859..574359	+	166	167039212	-	Teth514_0553	-	phosphodiesterase
538	 35.67	0	575575..577674	+	699	167039213	-	Teth514_0554	-	glutamine synthetase, catalytic region
539	 41.61	+1	577995..579335	+	446	167039214	-	Teth514_0555	-	ammonium transporter
540	 38.64	+1	579382..579720	+	112	167039215	-	Teth514_0556	-	nitrogen regulatory protein P-II
541	 41.07	+1	579995..580705	+	236	167039216	-	Teth514_0557	-	glutamine amidotransferase class-I
542	 35.64	0	581069..582193	+	374	167039217	-	Teth514_0558	-	glutamine amidotransferase, class-II
543	 39.44	+1	582190..583695	+	501	167039218	-	Teth514_0559	-	glutamate synthase (NADPH)
544	 38.89	+1	583707..584156	+	149	167039219	-	Teth514_0560	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
545	 33.25	0	584153..585421	+	422	167039220	-	Teth514_0561	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
546	 32.92	0	585418..586146	+	242	167039221	-	Teth514_0562	-	glutamate synthase alpha subunit
547	 32.66	0	586169..587206	-	345	167039222	-	Teth514_0563	-	biotin synthase
548	 42.42	+2	588109..589308	+	399	167039223	-	Teth514_0564	-	iron-containing alcohol dehydrogenase
549	 37.48	0	589853..590647	+	264	167039224	-	Teth514_0565	-	phosphomethylpyrimidine kinase
550	 38.21	0	590651..591286	+	211	167039225	-	Teth514_0566	-	thiamine-phosphate pyrophosphorylase
551	 39.27	+1	591288..592079	+	263	167039226	-	Teth514_0567	-	hydroxyethylthiazole kinase
552	 36.63	0	592076..592561	+	161	167039227	-	Teth514_0568	-	thiW protein
553	 31.04	0	592590..593768	+	392	167039228	-	Teth514_0569	-	putative hydroxymethylpyrimidine transporter CytX
554	 37.50	0	593809..594000	+	63	167039229	-	Teth514_0570	-	hydroxyethylthiazole kinase
555	 34.25	0	594291..594944	-	217	167039230	-	Teth514_0571	-	phosphate uptake regulator, PhoU
556	 41.11	+1	595381..596100	-	239	167039231	-	Teth514_0572	-	ABC transporter related
557	 34.54	0	596358..596606	+	82	167039232	-	Teth514_0573	-	hypothetical protein
558	 31.03	0	596970..598013	+	347	167039233	-	Teth514_0574	-	integrase catalytic subunit
559	 36.97	0	598332..599156	+	274	167039234	-	Teth514_0575	-	DeoR family transcriptional regulator
560	 35.80	0	599122..600054	+	310	167039235	-	Teth514_0576	-	1-phosphofructokinase
561	 37.58	0	600060..600506	+	148	167039236	-	Teth514_0577	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
562	 40.69	+1	600530..601888	+	452	167039237	-	Teth514_0578	-	PTS system, fructose subfamily, IIC subunit
563	 33.65	0	601918..602235	-	105	167039238	-	Teth514_0579	-	hypothetical protein
564	 36.07	0	602237..602674	-	145	167039239	-	Teth514_0580	-	heat shock protein Hsp20
565	 29.81	-1	602837..603745	+	302	167039240	-	Teth514_0581	-	abortive infection protein
566	 38.56	+1	603858..604871	+	337	167039241	-	Teth514_0582	-	alanine racemase
567	 32.97	0	604885..606279	-	464	167039242	-	Teth514_0583	-	UDP-N-acetylmuramate--L-alanine ligase
568	 33.58	0	606454..607278	+	274	167039243	-	Teth514_0584	-	purine operon repressor
569	 35.84	0	607420..607698	+	92	167039244	-	Teth514_0585	-	SpoVG family protein
570	 37.87	0	607768..609177	+	469	167039245	-	Teth514_0586	-	UDP-N-acetylglucosamine pyrophosphorylase
571	 38.70	+1	609183..610133	+	316	167039246	-	Teth514_0587	-	ribose-phosphate pyrophosphokinase
572	 36.84	0	610218..610901	+	227	167039247	-	Teth514_0588	-	two component transcriptional regulator
573	 32.41	0	610904..612316	+	470	167039248	-	Teth514_0589	-	integral membrane sensor signal transduction histidine kinase
574	 37.74	0	612581..613942	+	453	167039249	-	Teth514_0590	-	2-alkenal reductase
575	 31.71	0	614039..614593	+	184	167039250	-	Teth514_0591	-	peptidyl-tRNA hydrolase
576	 31.44	0	614625..614993	+	122	167039251	-	Teth514_0592	-	hypothetical protein
577	 33.39	0	614999..618496	+	1165	167039252	-	Teth514_0593	-	transcription-repair coupling factor
578	 29.91	-1	618562..619467	+	301	167039253	-	Teth514_0594	-	PpiC-type peptidyl-prolyl cis-trans isomerase
579	 34.06	0	619573..620124	+	183	167039254	-	Teth514_0595	-	AbrB family transcriptional regulator
580	 35.91	0	620197..621051	+	284	167039255	-	Teth514_0596	-	peptidase U57, YabG
581	 36.30	0	621241..621510	+	89	167039256	-	Teth514_0597	-	hypothetical protein
582	 32.81	0	621619..623145	+	508	167039257	-	Teth514_0598	-	peptidoglycan-binding LysM
583	 32.76	0	623253..624122	+	289	167039258	-	Teth514_0599	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
584	 33.48	0	624115..624792	+	225	167039259	-	Teth514_0600	-	GntR family transcriptional regulator
585	 30.32	-1	624798..625526	+	242	167039260	-	Teth514_0601	-	molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
586	 30.52	0	625594..625806	+	70	167039261	-	Teth514_0602	-	hypothetical protein
587	 36.39	0	625817..627421	+	534	167039262	-	Teth514_0603	-	GerA spore germination protein
588	 31.17	0	627405..628514	+	369	167039263	-	Teth514_0604	-	spore germination protein
589	 33.25	0	628498..629649	+	383	167039264	-	Teth514_0605	-	spore germination B3 GerAC family protein
590	 33.33	0	629719..630354	+	211	167039265	-	Teth514_0606	-	hypothetical protein
591	 40.37	+1	630447..631157	+	236	167039266	-	Teth514_0607	-	cell wall hydrolase, SleB
592	 31.91	0	631167..632501	+	444	167039267	-	Teth514_0608	-	peptidase
593	 38.89	+1	632567..632764	+	65	167039268	-	Teth514_0609	-	hypothetical protein
594	 35.19	0	632897..633976	+	359	167039269	-	Teth514_0610	-	D-alanine--D-alanine ligase
595	 32.15	0	634004..634426	+	140	167039270	-	Teth514_0611	-	hypothetical protein
596	 37.30	0	634428..636116	+	562	167039271	-	Teth514_0612	-	arginyl-tRNA synthetase
597	 33.33	0	636172..636816	+	214	167039272	-	Teth514_0613	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
598	 33.51	0	637810..638376	+	188	167039273	-	Teth514_0614	-	glutamine amidotransferase of anthranilate synthase
599	 34.18	0	638389..639693	+	434	167039274	-	Teth514_0615	-	para-aminobenzoate synthase, subunit I
600	 32.67	0	639723..640481	+	252	167039275	-	Teth514_0616	-	aminotransferase, class IV
601	 36.39	0	640547..640840	-	97	167039276	-	Teth514_0617	-	FMN-binding domain-containing protein
602	 31.21	0	640956..642227	+	423	167039277	-	Teth514_0618	-	major facilitator transporter
603	 48.60	+2	642401..643363	-	320	167039278	-	Teth514_0619	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
604	 49.42	+2	643353..644378	-	341	167039279	-	Teth514_0620	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
605	 42.44	+2	644391..645323	-	310	167039280	-	Teth514_0621	-	binding-protein-dependent transport systems inner membrane component
606	 37.79	0	645335..646255	-	306	167039281	-	Teth514_0622	-	binding-protein-dependent transport systems inner membrane component
607	 43.70	+2	646370..648028	-	552	167039282	-	Teth514_0623	-	4-phytase
608	 38.37	+1	648886..649560	+	224	167039283	-	Teth514_0624	-	hypothetical protein
609	 37.30	0	649611..650744	+	377	167039284	-	Teth514_0625	-	aldo/keto reductase
610	 31.39	0	651021..652304	+	427	167039285	-	Teth514_0626	-	NLP/P60 protein
611	 36.77	0	652326..654944	-	872	167039286	-	Teth514_0627	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
612	 36.31	0	655251..655721	+	156	167039287	-	Teth514_0628	-	methylated-DNA--protein-cysteine methyltransferase
613	 22.88	-2	655756..655908	+	50	167039288	-	Teth514_0629	-	hypothetical protein
614	 32.21	0	656064..656507	+	147	167039289	-	Teth514_0630	-	transcriptional regulator, TrmB
615	 35.09	0	656618..658843	+	741	167039290	-	Teth514_0631	-	ABC transporter related
616	 37.63	0	658840..660723	+	627	167039291	-	Teth514_0632	-	ABC transporter related
617	 36.46	0	660960..661598	+	212	167039292	-	Teth514_0633	-	putative proton-coupled thiamine transporter YuaJ
618	 31.10	0	661844..662380	+	178	167039293	-	Teth514_0634	-	phosphoesterase, PA-phosphatase related
619	 36.72	0	662987..665674	+	895	167039294	-	Teth514_0635	-	magnesium-translocating P-type ATPase
620	 29.78	-1	665862..666620	+	252	167039295	-	Teth514_0636	-	putative GAF sensor protein
621	 31.20	0	666925..667626	+	233	167039296	-	Teth514_0637	-	hypothetical protein
622	 28.59	-1	668124..668735	+	203	167039297	-	Teth514_0638	-	hypothetical protein
623	 30.62	0	668945..669349	+	134	167039298	-	Teth514_0639	-	hypothetical protein
624	 29.33	-1	669379..670002	+	207	167039299	-	Teth514_0640	-	hypothetical protein
625	 32.42	0	670109..670327	-	72	167039300	-	Teth514_0641	-	hypothetical protein
626	 31.73	0	670468..671652	+	394	167039301	-	Teth514_0642	-	hypothetical protein
627	 28.15	-1	671699..672277	-	192	167039302	-	Teth514_0643	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.