IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
468	 38.02	0	495794..496945	+	383	167039143	-	Teth514_0482	-	amidohydrolase
469	 36.10	0	497278..498504	+	408	167039144	-	Teth514_0483	-	arginine deiminase
470	 38.85	+1	498572..499513	+	313	167039145	-	Teth514_0484	-	ornithine carbamoyltransferase
471	 38.43	+1	499537..500478	+	313	167039146	-	Teth514_0485	-	carbamate kinase
472	 34.87	0	500772..501356	+	194	167039147	-	Teth514_0486	-	membrane protein-like protein
473	 37.51	0	501819..503231	+	470	167039148	-	Teth514_0487	-	RNA-directed DNA polymerase (Reverse transcriptase)
474	 35.71	0	503368..503829	+	153	167039149	-	Teth514_0488	-	hypothetical protein
475	 35.06	0	503826..504518	+	230	167039150	-	Teth514_0489	-	peptidase M22, glycoprotease
476	 35.12	0	504522..504968	+	148	167039151	-	Teth514_0490	-	ribosomal-protein-alanine acetyltransferase
477	 37.44	0	504982..506004	+	340	167039152	-	Teth514_0491	-	O-sialoglycoprotein endopeptidase
478	 33.12	0	506174..507124	+	316	167039153	-	Teth514_0492	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
479	 29.27	-1	507134..509026	-	630	167039154	-	Teth514_0493	-	ABC transporter related
480	 36.87	0	509158..509976	+	272	167039155	-	Teth514_0494	-	MotA/TolQ/ExbB proton channel
481	 33.05	0	509954..510670	+	238	167039156	-	Teth514_0495	-	OmpA/MotB domain-containing protein
482	 32.74	0	510778..511452	+	224	167039157	-	Teth514_0496	-	redox-sensing transcriptional repressor Rex
483	 30.50	0	511579..512037	+	152	167039158	-	Teth514_0497	-	hypothetical protein
484	 31.22	0	512059..512769	+	236	167039159	-	Teth514_0498	-	LytTR family two component transcriptional regulator
485	 28.12	-1	512789..513652	+	287	167039160	-	Teth514_0499	-	signal transduction histidine kinase regulating citrate/malate metabolism
486	 27.35	-1	513645..514229	+	194	167039161	-	Teth514_0500	-	accessory gene regulator B
487	 33.57	0	515005..515835	+	276	167039162	-	Teth514_0501	-	hypothetical protein
488	 36.88	0	515837..516682	+	281	167039163	-	Teth514_0502	-	ferredoxin--NADP(+) reductase subunit alpha
489	 40.40	+1	518380..520020	+	546	167039164	-	Teth514_0505	-	ferredoxin-dependent glutamate synthase
490	 33.00	0	520243..521136	+	297	167039165	-	Teth514_0506	-	8-oxoguanine DNA glycosylase domain-containing protein
491	 33.19	0	521137..521832	+	231	167039166	-	Teth514_0507	-	hypothetical protein
492	 38.16	0	521844..522257	+	137	167039167	-	Teth514_0508	-	hypothetical protein
493	 36.32	0	522558..523796	-	412	167039168	-	Teth514_0509	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
494	 37.16	0	524109..524291	+	60	167039169	-	Teth514_0510	-	hypothetical protein
495	 29.89	-1	524830..525816	+	328	167039170	-	Teth514_0511	-	hypothetical protein
496	 37.89	0	526051..526335	+	94	167039171	-	Teth514_0512	-	chaperonin Cpn10
497	 39.61	+1	526350..527975	+	541	167039172	-	Teth514_0513	-	chaperonin GroEL
498	 38.69	+1	528538..529992	+	484	167039173	-	Teth514_0514	-	response regulator receiver protein
499	 38.08	0	530006..531544	+	512	167039174	-	Teth514_0515	-	bifunctional GMP synthase/glutamine amidotransferase protein
500	 34.85	0	531918..533300	+	460	167039175	-	Teth514_0516	-	xanthine/uracil/vitamin C permease
501	 36.58	0	533361..533822	+	153	167039176	-	Teth514_0517	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
502	 29.80	-1	533842..534549	+	235	167039177	-	Teth514_0518	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
503	 35.74	0	534551..534799	+	82	167039178	-	Teth514_0519	-	phosphoribosylformylglycinamidine synthase, purS
504	 36.59	0	534802..535476	+	224	167039179	-	Teth514_0520	-	phosphoribosylformylglycinamidine synthase I
505	 37.38	0	535479..537680	+	733	167039180	-	Teth514_0521	-	phosphoribosylformylglycinamidine synthase II
506	 35.55	0	537659..539056	+	465	167039181	-	Teth514_0522	-	amidophosphoribosyltransferase
507	 35.11	0	539074..540084	+	336	167039182	-	Teth514_0523	-	phosphoribosylaminoimidazole synthetase
508	 36.42	0	540081..540695	+	204	167039183	-	Teth514_0524	-	phosphoribosylglycinamide formyltransferase
509	 35.17	0	540731..542257	+	508	167039184	-	Teth514_0525	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
510	 36.11	0	542270..543529	+	419	167039185	-	Teth514_0526	-	phosphoribosylamine--glycine ligase
511	 31.57	0	543771..544565	+	264	167039186	-	Teth514_0527	-	glutamate racemase
512	 36.15	0	544585..545757	+	390	167039187	-	Teth514_0528	-	amidohydrolase
513	 31.79	0	546158..547714	+	518	167039188	-	Teth514_0529	-	polysaccharide biosynthesis protein
514	 35.76	0	547787..549187	+	466	167039189	-	Teth514_0530	-	thiamine biosynthesis protein ThiH
515	 30.88	0	549595..551673	+	692	167039190	-	Teth514_0531	-	transcriptional antiterminator, BglG
516	 28.86	-1	551687..551932	+	81	167039191	-	Teth514_0532	-	hypothetical protein
517	 37.00	0	551955..552281	+	108	167039192	-	Teth514_0533	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
518	 37.66	0	552294..553610	+	438	167039193	-	Teth514_0534	-	PTS system lactose/cellobiose family IIC subunit
519	 33.97	0	553632..553946	+	104	167039194	-	Teth514_0535	-	phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
520	 32.01	0	554181..554483	+	100	167039195	-	Teth514_0536	-	TrpR like protein, YerC/YecD
521	 33.94	0	554521..556656	+	711	167039196	-	Teth514_0537	-	ATP-dependent DNA helicase PcrA
522	 35.70	0	556674..558662	+	662	167039197	-	Teth514_0538	-	DNA ligase, NAD-dependent
523	 37.50	0	558737..559024	+	95	167039198	-	Teth514_0539	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
524	 37.90	0	559037..560503	+	488	167039199	-	Teth514_0540	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
525	 37.82	0	560503..561930	+	475	167039200	-	Teth514_0541	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
526	 30.08	-1	562133..562255	+	40	167039201	-	Teth514_0542	-	hypothetical protein
527	 32.99	0	562700..563281	+	193	167039202	-	Teth514_0543	-	hypothetical protein
528	 34.77	0	563418..564743	+	441	167039203	-	Teth514_0544	-	integrase catalytic subunit
529	 34.08	0	564761..565561	+	266	167039204	-	Teth514_0545	-	AAA ATPase
530	 43.70	+2	565963..567621	+	552	167039205	-	Teth514_0546	-	4-phytase
531	 37.57	0	567736..568656	+	306	167039206	-	Teth514_0547	-	binding-protein-dependent transport systems inner membrane component
532	 42.55	+2	568668..569600	+	310	167039207	-	Teth514_0548	-	binding-protein-dependent transport systems inner membrane component
533	 48.93	+2	569613..570638	+	341	167039208	-	Teth514_0549	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
534	 48.60	+2	570628..571590	+	320	167039209	-	Teth514_0550	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
535	 36.90	0	572517..573302	+	261	167039210	-	Teth514_0551	-	ribonuclease PH
536	 31.32	0	573262..573858	+	198	167039211	-	Teth514_0552	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
537	 33.13	0	573859..574359	+	166	167039212	-	Teth514_0553	-	phosphodiesterase
538	 35.67	0	575575..577674	+	699	167039213	-	Teth514_0554	-	glutamine synthetase, catalytic region
539	 41.61	+1	577995..579335	+	446	167039214	-	Teth514_0555	-	ammonium transporter
540	 38.64	+1	579382..579720	+	112	167039215	-	Teth514_0556	-	nitrogen regulatory protein P-II
541	 41.07	+1	579995..580705	+	236	167039216	-	Teth514_0557	-	glutamine amidotransferase class-I
542	 35.64	0	581069..582193	+	374	167039217	-	Teth514_0558	-	glutamine amidotransferase, class-II
543	 39.44	+1	582190..583695	+	501	167039218	-	Teth514_0559	-	glutamate synthase (NADPH)
544	 38.89	+1	583707..584156	+	149	167039219	-	Teth514_0560	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
545	 33.25	0	584153..585421	+	422	167039220	-	Teth514_0561	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
546	 32.92	0	585418..586146	+	242	167039221	-	Teth514_0562	-	glutamate synthase alpha subunit
547	 32.66	0	586169..587206	-	345	167039222	-	Teth514_0563	-	biotin synthase
548	 42.42	+2	588109..589308	+	399	167039223	-	Teth514_0564	-	iron-containing alcohol dehydrogenase
549	 37.48	0	589853..590647	+	264	167039224	-	Teth514_0565	-	phosphomethylpyrimidine kinase
550	 38.21	0	590651..591286	+	211	167039225	-	Teth514_0566	-	thiamine-phosphate pyrophosphorylase
551	 39.27	+1	591288..592079	+	263	167039226	-	Teth514_0567	-	hydroxyethylthiazole kinase
552	 36.63	0	592076..592561	+	161	167039227	-	Teth514_0568	-	thiW protein
553	 31.04	0	592590..593768	+	392	167039228	-	Teth514_0569	-	putative hydroxymethylpyrimidine transporter CytX
554	 37.50	0	593809..594000	+	63	167039229	-	Teth514_0570	-	hydroxyethylthiazole kinase
555	 34.25	0	594291..594944	-	217	167039230	-	Teth514_0571	-	phosphate uptake regulator, PhoU
556	 41.11	+1	595381..596100	-	239	167039231	-	Teth514_0572	-	ABC transporter related
557	 34.54	0	596358..596606	+	82	167039232	-	Teth514_0573	-	hypothetical protein
558	 31.03	0	596970..598013	+	347	167039233	-	Teth514_0574	-	integrase catalytic subunit
559	 36.97	0	598332..599156	+	274	167039234	-	Teth514_0575	-	DeoR family transcriptional regulator
560	 35.80	0	599122..600054	+	310	167039235	-	Teth514_0576	-	1-phosphofructokinase
561	 37.58	0	600060..600506	+	148	167039236	-	Teth514_0577	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
562	 40.69	+1	600530..601888	+	452	167039237	-	Teth514_0578	-	PTS system, fructose subfamily, IIC subunit
563	 33.65	0	601918..602235	-	105	167039238	-	Teth514_0579	-	hypothetical protein
564	 36.07	0	602237..602674	-	145	167039239	-	Teth514_0580	-	heat shock protein Hsp20
565	 29.81	-1	602837..603745	+	302	167039240	-	Teth514_0581	-	abortive infection protein
566	 38.56	+1	603858..604871	+	337	167039241	-	Teth514_0582	-	alanine racemase
567	 32.97	0	604885..606279	-	464	167039242	-	Teth514_0583	-	UDP-N-acetylmuramate--L-alanine ligase
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.