IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 38.11	0	426243..427394	+	383	167039076	-	Teth514_0415	-	trans-homoaconitate synthase
402	 40.36	+1	427419..429338	+	639	167039077	-	Teth514_0416	-	aconitate hydratase
403	 27.72	-1	429873..430994	+	373	167039078	-	Teth514_0417	-	transcriptional regulator/sugar kinase-like protein
404	 40.04	+1	431305..433317	+	670	167039079	-	Teth514_0418	-	hypothetical protein
405	 36.11	0	433585..434880	+	431	167039080	-	Teth514_0419	-	citrate transporter
406	 28.02	-1	434960..436465	+	501	167039081	-	Teth514_0420	-	hypothetical protein
407	 33.04	0	436491..437171	+	226	167039082	-	Teth514_0421	-	hypothetical protein
408	 36.17	0	437196..439343	+	715	167039083	-	Teth514_0422	-	hydantoinase/oxoprolinase
409	 26.55	-1	439348..439878	+	176	167039084	-	Teth514_0423	-	hypothetical protein
410	 35.13	0	439887..441224	+	445	167039085	-	Teth514_0424	-	glucose-inhibited division protein A
411	 33.05	0	441268..441621	-	117	167039086	-	Teth514_0425	-	aspartate 1-decarboxylase
412	 33.69	0	441621..442472	-	283	167039087	-	Teth514_0426	-	pantoate--beta-alanine ligase
413	 39.03	+1	442469..443293	-	274	167039088	-	Teth514_0427	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
414	 29.74	-1	443253..444143	-	296	167039089	-	Teth514_0428	-	oxidoreductase domain-containing protein
415	 36.47	0	444345..445109	-	254	167039090	-	Teth514_0429	-	tRNA(1-methyladenosine) methyltransferase and related methyltransferase-like protein
416	 30.33	-1	445313..445711	-	132	167039091	-	Teth514_0430	-	phage integrase family protein
417	 34.72	0	445870..446229	+	119	167039092	-	Teth514_0431	-	hypothetical protein
418	 33.42	0	446613..447773	+	386	167039093	-	Teth514_0432	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
419	 39.39	+1	447770..448297	+	175	167039094	-	Teth514_0433	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
420	 35.88	0	448365..449540	+	391	167039095	-	Teth514_0434	-	major facilitator transporter
421	 30.21	-1	449807..450190	-	127	167039096	-	Teth514_0435	-	hypothetical protein
422	 32.59	0	450193..450867	-	224	167039097	-	Teth514_0436	-	hypothetical protein
423	 33.33	0	451089..451910	+	273	167039098	-	Teth514_0437	-	Cof-like hydrolase
424	 36.68	0	452228..453244	+	338	167039099	-	Teth514_0438	-	alanine racemase
425	 34.51	0	453299..453976	+	225	167039100	-	Teth514_0439	-	two component transcriptional regulator
426	 31.62	0	453987..455387	+	466	167039101	-	Teth514_0440	-	integral membrane sensor signal transduction histidine kinase
427	 33.88	0	455485..456939	+	484	167039102	-	Teth514_0441	-	hypothetical protein
428	 31.77	0	456944..457456	-	170	167039103	-	Teth514_0442	-	hypothetical protein
429	 28.15	-1	457552..458091	+	179	167039104	-	Teth514_0443	-	hypothetical protein
430	 35.52	0	458648..459151	+	167	167039105	-	Teth514_0444	-	rubrerythrin
431	 38.38	+1	459426..460613	+	395	167039106	-	Teth514_0445	-	S-adenosylmethionine synthetase
432	 33.83	0	460813..463020	+	735	167039107	-	Teth514_0446	-	RecD/TraA family helicase
433	 34.20	0	463147..463836	+	229	167039108	-	Teth514_0447	-	phosphoribosyltransferase
434	 35.25	0	463875..464291	+	138	167039109	-	Teth514_0448	-	hypothetical protein
435	 30.43	-1	464353..464628	+	91	167039110	-	Teth514_0449	-	hypothetical protein
436	 28.30	-1	464645..465121	+	158	167039111	-	Teth514_0450	-	hypothetical protein
437	 36.24	0	465132..466574	+	480	167039112	-	Teth514_0451	-	flagellar hook-associated protein FlgK
438	 37.47	0	466591..467484	+	297	167039113	-	Teth514_0452	-	flagellar hook-associated protein FlgL
439	 35.13	0	467489..468046	+	185	167039114	-	Teth514_0453	-	hypothetical protein
440	 29.92	-1	468064..468561	+	165	167039115	-	Teth514_0454	-	flagellar assembly protein FliW
441	 30.26	-1	468542..468769	+	75	167039116	-	Teth514_0455	-	carbon storage regulator, CsrA
442	 39.59	+1	468899..470113	+	404	167039117	-	Teth514_0456	-	flagellin domain-containing protein
443	 26.13	-2	470514..471527	-	337	167039118	-	Teth514_0457	-	LAGLIDADG DNA endonuclease
444	 29.56	-1	471712..472665	+	317	167039119	-	Teth514_0458	-	DNA adenine methylase
445	 28.68	-1	472676..473599	+	307	167039120	-	Teth514_0459	-	Type II site-specific deoxyribonuclease
446	 31.03	0	473587..474366	+	259	167039121	-	Teth514_0460	-	putative RNA methylase
447	 35.23	0	474406..476247	-	613	167039122	-	Teth514_0461	-	asparagine synthase (glutamine-hydrolyzing)
448	 29.57	-1	476388..476573	+	61	167039123	-	Teth514_0462	-	hypothetical protein
449	 33.33	0	476712..477059	+	115	167039124	-	Teth514_0463	-	flagellar protein FlaG protein
450	 34.68	0	477074..478633	+	519	167039125	-	Teth514_0464	-	flagellar hook-associated 2 domain-containing protein
451	 32.82	0	478645..479034	+	129	167039126	-	Teth514_0465	-	flagellar protein FliS
452	 28.03	-1	479039..479509	+	156	167039127	-	Teth514_0466	-	hypothetical protein
453	 38.89	+1	480076..480309	+	77	167039128	-	Teth514_0467	-	hypothetical protein
454	 35.12	0	480650..481432	+	260	167039129	-	Teth514_0468	-	extracellular solute-binding protein
455	 36.80	0	481500..482162	+	220	167039130	-	Teth514_0469	-	polar amino acid ABC transporter, inner membrane subunit
456	 36.65	0	482149..482871	+	240	167039131	-	Teth514_0470	-	ABC transporter related
457	 35.35	0	482975..483520	+	181	167039132	-	Teth514_0471	-	sigma 54 modulation protein/ribosomal protein S30EA
458	 36.60	0	483650..484291	+	213	167039133	-	Teth514_0472	-	hypothetical protein
459	 32.55	0	484512..485786	+	424	167039134	-	Teth514_0473	-	metal dependent phosphohydrolase
460	 33.68	0	485776..486351	+	191	167039135	-	Teth514_0474	-	hypothetical protein
461	 35.87	0	486326..486838	+	170	167039136	-	Teth514_0475	-	3H domain-containing protein
462	 39.32	+1	486948..487448	+	166	167039137	-	Teth514_0476	-	hypothetical protein
463	 37.94	0	487955..490648	+	897	167039138	-	Teth514_0477	-	preprotein translocase subunit SecA
464	 38.47	+1	490780..491772	+	330	167039139	-	Teth514_0478	-	peptide chain release factor 2
465	 35.11	0	491827..493965	+	712	167039140	-	Teth514_0479	-	RNA-binding S1 domain-containing protein
466	 34.29	0	494051..494782	+	243	167039141	-	Teth514_0480	-	copper amine oxidase domain-containing protein
467	 32.41	0	494907..495668	+	253	167039142	-	Teth514_0481	-	hypothetical protein
468	 38.02	0	495794..496945	+	383	167039143	-	Teth514_0482	-	amidohydrolase
469	 36.10	0	497278..498504	+	408	167039144	-	Teth514_0483	-	arginine deiminase
470	 38.85	+1	498572..499513	+	313	167039145	-	Teth514_0484	-	ornithine carbamoyltransferase
471	 38.43	+1	499537..500478	+	313	167039146	-	Teth514_0485	-	carbamate kinase
472	 34.87	0	500772..501356	+	194	167039147	-	Teth514_0486	-	membrane protein-like protein
473	 37.51	0	501819..503231	+	470	167039148	-	Teth514_0487	-	RNA-directed DNA polymerase (Reverse transcriptase)
474	 35.71	0	503368..503829	+	153	167039149	-	Teth514_0488	-	hypothetical protein
475	 35.06	0	503826..504518	+	230	167039150	-	Teth514_0489	-	peptidase M22, glycoprotease
476	 35.12	0	504522..504968	+	148	167039151	-	Teth514_0490	-	ribosomal-protein-alanine acetyltransferase
477	 37.44	0	504982..506004	+	340	167039152	-	Teth514_0491	-	O-sialoglycoprotein endopeptidase
478	 33.12	0	506174..507124	+	316	167039153	-	Teth514_0492	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
479	 29.27	-1	507134..509026	-	630	167039154	-	Teth514_0493	-	ABC transporter related
480	 36.87	0	509158..509976	+	272	167039155	-	Teth514_0494	-	MotA/TolQ/ExbB proton channel
481	 33.05	0	509954..510670	+	238	167039156	-	Teth514_0495	-	OmpA/MotB domain-containing protein
482	 32.74	0	510778..511452	+	224	167039157	-	Teth514_0496	-	redox-sensing transcriptional repressor Rex
483	 30.50	0	511579..512037	+	152	167039158	-	Teth514_0497	-	hypothetical protein
484	 31.22	0	512059..512769	+	236	167039159	-	Teth514_0498	-	LytTR family two component transcriptional regulator
485	 28.12	-1	512789..513652	+	287	167039160	-	Teth514_0499	-	signal transduction histidine kinase regulating citrate/malate metabolism
486	 27.35	-1	513645..514229	+	194	167039161	-	Teth514_0500	-	accessory gene regulator B
487	 33.57	0	515005..515835	+	276	167039162	-	Teth514_0501	-	hypothetical protein
488	 36.88	0	515837..516682	+	281	167039163	-	Teth514_0502	-	ferredoxin--NADP(+) reductase subunit alpha
489	 40.40	+1	518380..520020	+	546	167039164	-	Teth514_0505	-	ferredoxin-dependent glutamate synthase
490	 33.00	0	520243..521136	+	297	167039165	-	Teth514_0506	-	8-oxoguanine DNA glycosylase domain-containing protein
491	 33.19	0	521137..521832	+	231	167039166	-	Teth514_0507	-	hypothetical protein
492	 38.16	0	521844..522257	+	137	167039167	-	Teth514_0508	-	hypothetical protein
493	 36.32	0	522558..523796	-	412	167039168	-	Teth514_0509	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
494	 37.16	0	524109..524291	+	60	167039169	-	Teth514_0510	-	hypothetical protein
495	 29.89	-1	524830..525816	+	328	167039170	-	Teth514_0511	-	hypothetical protein
496	 37.89	0	526051..526335	+	94	167039171	-	Teth514_0512	-	chaperonin Cpn10
497	 39.61	+1	526350..527975	+	541	167039172	-	Teth514_0513	-	chaperonin GroEL
498	 38.69	+1	528538..529992	+	484	167039173	-	Teth514_0514	-	response regulator receiver protein
499	 38.08	0	530006..531544	+	512	167039174	-	Teth514_0515	-	bifunctional GMP synthase/glutamine amidotransferase protein
500	 34.85	0	531918..533300	+	460	167039175	-	Teth514_0516	-	xanthine/uracil/vitamin C permease
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.