IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
336	 28.36	-1	354803..355003	+	66	167039011	-	Teth514_0344	-	hypothetical protein
337	 26.74	-1	355313..355600	+	95	167039012	-	Teth514_0345	-	hypothetical protein
338	 38.80	+1	355905..356618	+	237	167039013	-	Teth514_0346	-	ABC transporter related
339	 30.45	0	356615..358207	+	530	167039014	-	Teth514_0347	-	hypothetical protein
340	 29.07	-1	358220..358993	+	257	167039015	-	Teth514_0348	-	regulatory protein, LuxR
341	 29.98	-1	359936..361219	+	427	167039016	-	Teth514_0349	-	radical SAM domain-containing protein
342	 28.95	-1	361794..362705	+	303	167039017	-	Teth514_0350	-	ABC transporter related
343	 28.66	-1	362689..363459	+	256	167039018	-	Teth514_0351	-	hypothetical protein
344	 27.11	-1	363456..364130	+	224	167039019	-	Teth514_0352	-	abortive infection protein
345	 29.86	-1	364132..364563	+	143	167039020	-	Teth514_0353	-	hypothetical protein
346	 34.52	0	364556..364975	+	139	167039021	-	Teth514_0354	-	hypothetical protein
347	 34.32	0	367924..369642	+	572	167039022	-	Teth514_0358	-	ABC transporter related
348	 34.44	0	369739..370641	-	300	167039023	-	Teth514_0359	-	transposase, mutator type
349	 33.33	0	372055..372204	+	49	167039024	-	Teth514_0361	-	ABC-type sugar transport system ATPase component-like protein
350	 34.27	0	372227..372757	+	176	167039025	-	Teth514_0362	-	hypothetical protein
351	 35.25	0	372773..373504	+	243	167039026	-	Teth514_0363	-	ABC transporter related
352	 32.83	0	373494..374678	+	394	167039027	-	Teth514_0364	-	ABC-2 type transporter
353	 28.82	-1	374870..375490	+	206	167039028	-	Teth514_0365	-	hypothetical protein
354	 30.86	0	375706..375867	+	53	167039029	-	Teth514_0366	-	hypothetical protein
355	 36.09	0	375904..376845	+	313	167039030	-	Teth514_0367	-	lysophospholipase-like protein
356	 31.96	0	376831..377778	-	315	167039031	-	Teth514_0368	-	auxin efflux carrier
357	 30.94	0	377844..378845	+	333	167039032	-	Teth514_0369	-	hypothetical protein
358	 34.52	0	378931..380109	+	392	167039033	-	Teth514_0370	-	hypothetical protein
359	 25.95	-2	380186..380578	+	130	167039034	-	Teth514_0371	-	hypothetical protein
360	 32.58	0	380715..381512	-	265	167039035	-	Teth514_0372	-	ABC transporter related
361	 30.96	0	381512..382102	-	196	167039036	-	Teth514_0373	-	hypothetical protein
362	 28.57	-1	382095..382451	-	118	167039037	-	Teth514_0374	-	GntR family transcriptional regulator
363	 28.19	-1	382461..383588	-	375	167039038	-	Teth514_0375	-	hypothetical protein
364	 37.08	0	383800..384840	+	346	167039039	-	Teth514_0376	-	peptidase M42 family protein
365	 36.36	0	384831..385853	+	340	167039040	-	Teth514_0377	-	cellulase
366	 36.38	0	385850..386833	+	327	167039041	-	Teth514_0378	-	peptidase M42 family protein
367	 34.34	0	386961..388049	-	362	167039042	-	Teth514_0379	-	hypothetical protein
368	 32.99	0	388263..388844	+	193	167039043	-	Teth514_0380	-	hypothetical protein
369	 34.77	0	388981..390306	+	441	167039044	-	Teth514_0381	-	integrase catalytic subunit
370	 34.08	0	390324..391124	+	266	167039045	-	Teth514_0382	-	AAA ATPase
371	 37.08	0	391294..392334	-	346	167039046	-	Teth514_0383	-	RNA-directed DNA polymerase (Reverse transcriptase)
372	 39.65	+1	392786..396313	-	1175	167039047	-	Teth514_0384	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
373	 34.17	0	396804..397403	+	199	167039048	-	Teth514_0385	-	metal dependent phosphohydrolase
374	 28.50	-1	397418..397624	+	68	167039049	-	Teth514_0386	-	hypothetical protein
375	 28.76	-1	397717..397869	+	50	167039050	-	Teth514_0387	-	hypothetical protein
376	 37.41	0	398299..398445	-	48	167039051	-	Teth514_0388	-	hypothetical protein
377	 34.47	0	398790..400553	+	587	167039052	-	Teth514_0389	-	methyl-accepting chemotaxis sensory transducer
378	 37.57	0	400735..401631	+	298	167039053	-	Teth514_0390	-	glutamate formiminotransferase
379	 35.71	0	401641..402102	+	153	167039054	-	Teth514_0391	-	imidazolonepropionase
380	 32.87	0	402136..402567	+	143	167039055	-	Teth514_0392	-	hypothetical protein
381	 30.77	0	402585..403013	+	142	167039056	-	Teth514_0393	-	hypothetical protein
382	 35.48	0	403081..404523	-	480	167039057	-	Teth514_0394	-	glycoside hydrolase family protein
383	 32.61	0	404549..405382	-	277	167039058	-	Teth514_0395	-	binding-protein-dependent transport systems inner membrane component
384	 33.98	0	405395..406318	-	307	167039059	-	Teth514_0396	-	binding-protein-dependent transport systems inner membrane component
385	 36.05	0	406397..407683	-	428	167039060	-	Teth514_0397	-	extracellular solute-binding protein
386	 29.75	-1	407852..409555	+	567	167039061	-	Teth514_0398	-	histidine kinase internal region
387	 29.96	-1	409566..410663	+	365	167039062	-	Teth514_0399	-	response regulator receiver protein
388	 35.99	0	410756..411394	+	212	167039063	-	Teth514_0400	-	formiminotransferase-cyclodeaminase
389	 37.41	0	411682..412737	+	351	167039064	-	Teth514_0401	-	basic membrane lipoprotein
390	 34.71	0	412797..414326	+	509	167039065	-	Teth514_0402	-	ABC transporter related
391	 38.15	0	414326..415384	+	352	167039066	-	Teth514_0403	-	inner-membrane translocator
392	 40.07	+1	415384..416304	+	306	167039067	-	Teth514_0404	-	inner-membrane translocator
393	 38.97	+1	417059..417466	+	135	167039068	-	Teth514_0407	-	cytidine deaminase
394	 37.18	0	417499..418668	+	389	167039069	-	Teth514_0408	-	phosphopentomutase
395	 38.50	+1	418684..419979	+	431	167039070	-	Teth514_0409	-	pyrimidine-nucleoside phosphorylase
396	 31.09	0	420101..421747	+	548	167039071	-	Teth514_0410	-	methyl-accepting chemotaxis sensory transducer
397	 36.18	0	421870..422817	+	315	167039072	-	Teth514_0411	-	hypothetical protein
398	 39.54	+1	423268..424668	+	466	167039073	-	Teth514_0412	-	PTS system, N-acetylglucosamine-specific IIBC subunit
399	 29.84	-1	424781..425266	+	161	167039074	-	Teth514_0413	-	PTS system, glucose subfamily, IIA subunit
400	 31.16	0	425284..426111	+	275	167039075	-	Teth514_0414	-	transcriptional antiterminator, BglG
401	 38.11	0	426243..427394	+	383	167039076	-	Teth514_0415	-	trans-homoaconitate synthase
402	 40.36	+1	427419..429338	+	639	167039077	-	Teth514_0416	-	aconitate hydratase
403	 27.72	-1	429873..430994	+	373	167039078	-	Teth514_0417	-	transcriptional regulator/sugar kinase-like protein
404	 40.04	+1	431305..433317	+	670	167039079	-	Teth514_0418	-	hypothetical protein
405	 36.11	0	433585..434880	+	431	167039080	-	Teth514_0419	-	citrate transporter
406	 28.02	-1	434960..436465	+	501	167039081	-	Teth514_0420	-	hypothetical protein
407	 33.04	0	436491..437171	+	226	167039082	-	Teth514_0421	-	hypothetical protein
408	 36.17	0	437196..439343	+	715	167039083	-	Teth514_0422	-	hydantoinase/oxoprolinase
409	 26.55	-1	439348..439878	+	176	167039084	-	Teth514_0423	-	hypothetical protein
410	 35.13	0	439887..441224	+	445	167039085	-	Teth514_0424	-	glucose-inhibited division protein A
411	 33.05	0	441268..441621	-	117	167039086	-	Teth514_0425	-	aspartate 1-decarboxylase
412	 33.69	0	441621..442472	-	283	167039087	-	Teth514_0426	-	pantoate--beta-alanine ligase
413	 39.03	+1	442469..443293	-	274	167039088	-	Teth514_0427	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
414	 29.74	-1	443253..444143	-	296	167039089	-	Teth514_0428	-	oxidoreductase domain-containing protein
415	 36.47	0	444345..445109	-	254	167039090	-	Teth514_0429	-	tRNA(1-methyladenosine) methyltransferase and related methyltransferase-like protein
416	 30.33	-1	445313..445711	-	132	167039091	-	Teth514_0430	-	phage integrase family protein
417	 34.72	0	445870..446229	+	119	167039092	-	Teth514_0431	-	hypothetical protein
418	 33.42	0	446613..447773	+	386	167039093	-	Teth514_0432	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
419	 39.39	+1	447770..448297	+	175	167039094	-	Teth514_0433	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
420	 35.88	0	448365..449540	+	391	167039095	-	Teth514_0434	-	major facilitator transporter
421	 30.21	-1	449807..450190	-	127	167039096	-	Teth514_0435	-	hypothetical protein
422	 32.59	0	450193..450867	-	224	167039097	-	Teth514_0436	-	hypothetical protein
423	 33.33	0	451089..451910	+	273	167039098	-	Teth514_0437	-	Cof-like hydrolase
424	 36.68	0	452228..453244	+	338	167039099	-	Teth514_0438	-	alanine racemase
425	 34.51	0	453299..453976	+	225	167039100	-	Teth514_0439	-	two component transcriptional regulator
426	 31.62	0	453987..455387	+	466	167039101	-	Teth514_0440	-	integral membrane sensor signal transduction histidine kinase
427	 33.88	0	455485..456939	+	484	167039102	-	Teth514_0441	-	hypothetical protein
428	 31.77	0	456944..457456	-	170	167039103	-	Teth514_0442	-	hypothetical protein
429	 28.15	-1	457552..458091	+	179	167039104	-	Teth514_0443	-	hypothetical protein
430	 35.52	0	458648..459151	+	167	167039105	-	Teth514_0444	-	rubrerythrin
431	 38.38	+1	459426..460613	+	395	167039106	-	Teth514_0445	-	S-adenosylmethionine synthetase
432	 33.83	0	460813..463020	+	735	167039107	-	Teth514_0446	-	RecD/TraA family helicase
433	 34.20	0	463147..463836	+	229	167039108	-	Teth514_0447	-	phosphoribosyltransferase
434	 35.25	0	463875..464291	+	138	167039109	-	Teth514_0448	-	hypothetical protein
435	 30.43	-1	464353..464628	+	91	167039110	-	Teth514_0449	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.