IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.39   STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.18	0	195..1526	+	443	167038676	-	Teth514_0001	-	chromosomal replication initiation protein
2	 31.18	0	1762..2874	+	370	167038677	-	Teth514_0002	-	DNA polymerase III subunit beta
3	 28.50	-1	2895..3101	+	68	167038678	-	Teth514_0003	-	RNA-binding S4 domain-containing protein
4	 27.46	-1	3112..4200	+	362	167038679	-	Teth514_0004	-	DNA replication and repair protein RecF
5	 35.27	0	4212..4469	+	85	167038680	-	Teth514_0005	-	hypothetical protein
6	 33.33	0	4482..6740	+	752	167038681	-	Teth514_0006	-	Alpha-glucosidase
7	 31.97	0	6758..7489	-	243	167038682	-	Teth514_0007	-	glutamine amidotransferase
8	 29.46	-1	7501..8841	-	446	167038683	-	Teth514_0008	-	hypothetical protein
9	 35.33	0	9195..11096	+	633	167038684	-	Teth514_0009	-	DNA gyrase subunit B
10	 35.23	0	11111..13534	+	807	167038685	-	Teth514_0010	-	DNA gyrase, A subunit
11	 34.81	0	13560..14573	-	337	167038686	-	Teth514_0011	-	NADH:flavin oxidoreductase/NADH oxidase
12	 35.12	0	15127..15630	+	167	167038687	-	Teth514_0012	-	acetolactate synthase, small subunit
13	 36.85	0	15630..16625	+	331	167038688	-	Teth514_0013	-	ketol-acid reductoisomerase
14	 36.93	0	16644..17840	+	398	167038689	-	Teth514_0014	-	pyruvate carboxyltransferase
15	 39.62	+1	17831..19087	+	418	167038690	-	Teth514_0015	-	3-isopropylmalate dehydratase large subunit
16	 35.20	0	19087..19569	+	160	167038691	-	Teth514_0016	-	3-isopropylmalate dehydratase small subunit
17	 37.08	0	19572..20639	+	355	167038692	-	Teth514_0017	-	3-isopropylmalate dehydrogenase
18	 40.12	+1	20636..22315	+	559	167038693	-	Teth514_0018	-	dihydroxy-acid dehydratase
19	 37.60	0	22312..23976	+	554	167038694	-	Teth514_0019	-	acetolactate synthase, large subunit, biosynthetic type
20	 34.44	0	24174..25256	+	360	167038695	-	Teth514_0020	-	riboflavin biosynthesis protein RibD
21	 32.37	0	25267..25890	+	207	167038696	-	Teth514_0021	-	riboflavin synthase, alpha subunit
22	 36.19	0	25928..27118	+	396	167038697	-	Teth514_0022	-	GTP cyclohydrolase II
23	 36.77	0	27196..27660	+	154	167038698	-	Teth514_0023	-	riboflavin synthase
24	 30.90	0	27679..28746	-	355	167038699	-	Teth514_0024	-	hypothetical protein
25	 33.48	0	28894..30276	-	460	167038700	-	Teth514_0025	-	IS605 family transposase OrfB
26	 30.99	0	30587..30757	-	56	167038701	-	Teth514_0026	-	hypothetical protein
27	 32.02	0	30895..31425	+	176	167038702	-	Teth514_0027	-	signal peptidase I
28	 37.11	0	31701..32972	+	423	167038703	-	Teth514_0028	-	seryl-tRNA synthetase
29	 30.85	0	33814..34539	+	241	167038704	-	Teth514_0029	-	GDSL family lipase
30	 36.24	0	34883..35329	+	148	167038705	-	Teth514_0031	-	CMP/dCMP deaminase, zinc-binding
31	 30.17	-1	35952..37850	+	632	167038706	-	Teth514_0032	-	putative PAS/PAC sensor protein
32	 31.86	0	37909..39465	+	518	167038707	-	Teth514_0033	-	DNA polymerase III, subunits gamma and tau
33	 37.80	0	39532..39867	+	111	167038708	-	Teth514_0034	-	hypothetical protein
34	 36.50	0	39877..40476	+	199	167038709	-	Teth514_0035	-	recombination protein RecR
35	 29.14	-1	40645..41049	+	134	167038710	-	Teth514_0036	-	CrcB protein
36	 28.12	-1	41046..41429	+	127	167038711	-	Teth514_0037	-	CrcB protein
37	 33.62	0	41614..42657	+	347	167038712	-	Teth514_0038	-	metal dependent phosphohydrolase
38	 28.57	-1	42707..42979	+	90	167038713	-	Teth514_0039	-	hypothetical protein
39	 26.74	-1	43035..43307	+	90	167038714	-	Teth514_0040	-	sigmaK-factor processing regulatory BofA
40	 39.77	+1	43388..43651	+	87	167038715	-	Teth514_0041	-	hypothetical protein
41	 34.69	0	46874..47242	+	122	167038716	-	Teth514_0042	-	hypothetical protein
42	 28.31	-1	49159..49377	-	72	167038717	-	Teth514_0043	-	hypothetical protein
43	 29.75	-1	49389..50282	-	297	167038718	-	Teth514_0044	-	LysR family transcriptional regulator
44	 39.02	+1	50478..51128	+	216	167038719	-	Teth514_0045	-	protein of unknown function DUF395, YeeE/YedE
45	 36.40	0	51162..51389	+	75	167038720	-	Teth514_0046	-	SirA family protein
46	 38.49	+1	51406..51948	+	180	167038721	-	Teth514_0047	-	protein of unknown function DUF395, YeeE/YedE
47	 36.36	0	51995..53218	+	407	167038722	-	Teth514_0048	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
48	 38.82	+1	53601..54548	+	315	167038723	-	Teth514_0049	-	ROK family glucokinase
49	 30.72	0	54559..55131	+	190	167038724	-	Teth514_0050	-	DNA-3-methyladenine glycosylase I
50	 32.39	0	55286..55498	+	70	167038725	-	Teth514_0051	-	hypothetical protein
51	 34.46	0	55568..56989	+	473	167038726	-	Teth514_0052	-	Orn/Lys/Arg decarboxylase, major region
52	 35.13	0	56986..57597	+	203	167038727	-	Teth514_0053	-	dTMP kinase
53	 36.36	0	57610..57939	+	109	167038728	-	Teth514_0054	-	hypothetical protein
54	 28.12	-1	57950..58390	+	146	167038729	-	Teth514_0055	-	hypothetical protein
55	 28.51	-1	58399..59373	+	324	167038730	-	Teth514_0056	-	DNA polymerase III, delta prime subunit
56	 34.58	0	59376..60257	+	293	167038731	-	Teth514_0057	-	PSP1 domain-containing protein
57	 33.58	0	60509..61732	-	407	167038732	-	Teth514_0058	-	arginine deiminase
58	 29.85	-1	61873..62619	+	248	167038733	-	Teth514_0059	-	methyltransferase small
59	 33.45	0	62622..63443	+	273	167038734	-	Teth514_0060	-	uroporphyrin-III C/tetrapyrrole methyltransferase
60	 37.70	0	64485..64736	-	83	167038735	-	Teth514_0062	-	AbrB family transcriptional regulator
61	 34.87	0	64914..65498	+	194	167038736	-	Teth514_0063	-	nucleoside recognition domain-containing protein
62	 36.02	0	65504..66025	+	173	167038737	-	Teth514_0064	-	nucleoside recognition domain-containing protein
63	 31.13	0	66106..67509	+	467	167038738	-	Teth514_0065	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
64	 35.76	0	67845..69743	+	632	167038739	-	Teth514_0066	-	methionyl-tRNA synthetase
65	 33.85	0	69756..70523	+	255	167038740	-	Teth514_0067	-	TatD family hydrolase
66	 34.11	0	70709..71740	+	343	167038741	-	Teth514_0068	-	3D domain-containing protein
67	 31.51	0	71777..72598	+	273	167038742	-	Teth514_0069	-	dimethyladenosine transferase
68	 34.56	0	72668..73726	+	352	167038743	-	Teth514_0070	-	hypothetical protein
69	 27.85	-1	73766..74002	-	78	167038744	-	Teth514_0071	-	hypothetical protein
70	 28.06	-1	74138..74725	-	195	167038745	-	Teth514_0072	-	hypothetical protein
71	 25.18	-2	74898..75890	-	330	167038746	-	Teth514_0073	-	hypothetical protein
72	 29.38	-1	75887..76543	-	218	167038747	-	Teth514_0074	-	putative RNA polymerase sigma factor SigI
73	 36.21	0	76604..77716	+	370	167038748	-	Teth514_0075	-	hypothetical protein
74	 32.77	0	77740..78096	-	118	167038749	-	Teth514_0076	-	hypothetical protein
75	 26.20	-2	78237..78755	+	172	167038750	-	Teth514_0077	-	hypothetical protein
76	 35.64	0	78756..80228	+	490	167038751	-	Teth514_0078	-	microtubule-severing ATPase
77	 36.11	0	80677..82008	+	443	167038752	-	Teth514_0079	-	electron transport complex, RnfABCDGE type, C subunit
78	 35.12	0	82024..83031	+	335	167038753	-	Teth514_0080	-	electron transport complex, RnfABCDGE type, D subunit
79	 32.47	0	83032..83613	+	193	167038754	-	Teth514_0081	-	electron transport complex, RnfABCDGE type, G subunit
80	 33.79	0	83636..84286	+	216	167038755	-	Teth514_0082	-	electron transport complex, RnfABCDGE type, E subunit
81	 29.67	-1	84261..84833	+	190	167038756	-	Teth514_0083	-	electron transport complex, RnfABCDGE type, A subunit
82	 35.29	0	84845..85660	+	271	167038757	-	Teth514_0084	-	electron transport complex, RnfABCDGE type, B subunit
83	 30.26	-1	85739..86161	+	140	167038758	-	Teth514_0085	-	hypothetical protein
84	 28.83	-1	86194..86304	+	36	167038759	-	Teth514_0086	-	hypothetical protein
85	 29.63	-1	86413..86763	+	116	167038760	-	Teth514_0087	-	response regulator receiver protein
86	 37.91	0	86888..87739	+	283	167038761	-	Teth514_0088	-	putative aldolase
87	 35.17	0	88046..89572	+	508	167038762	-	Teth514_0089	-	transcription termination factor Rho
88	 34.76	0	89635..89844	+	69	167038763	-	Teth514_0090	-	50S ribosomal protein L31
89	 38.32	0	89913..90494	+	193	167038764	-	Teth514_0091	-	thymidine kinase
90	 32.04	0	90510..91436	+	308	167038765	-	Teth514_0092	-	hypothetical protein
91	 33.21	0	91423..92262	+	279	167038766	-	Teth514_0093	-	HemK family modification methylase
92	 35.85	0	92311..93381	+	356	167038767	-	Teth514_0094	-	peptide chain release factor 1
93	 38.06	0	93713..94432	+	239	167038768	-	Teth514_0095	-	zinc/iron permease
94	 35.77	0	94460..95524	+	354	167038769	-	Teth514_0096	-	Sua5/YciO/YrdC/YwlC family protein
95	 36.36	0	95521..95982	+	153	167038770	-	Teth514_0097	-	protein tyrosine phosphatase
96	 40.27	+1	95979..96425	+	148	167038771	-	Teth514_0098	-	RpiB/LacA/LacB family sugar-phosphate isomerase
97	 39.02	+1	96475..97107	+	210	167038772	-	Teth514_0099	-	uracil phosphoribosyltransferase
98	 39.56	+1	97125..97574	+	149	167038773	-	Teth514_0100	-	CMP/dCMP deaminase, zinc-binding
99	 40.74	+1	97608..97904	-	98	167038774	-	Teth514_0101	-	hypothetical protein
100	 27.60	-1	98253..99002	+	249	167038775	-	Teth514_0102	-	hypothetical protein
34.39	MEAN

3.95	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.