IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
230	 38.13	0	248334..249500	+	388	167038905	-	Teth514_0236	-	aminotransferase, class I and II
231	 33.14	0	249633..251750	+	705	167038906	-	Teth514_0237	-	transcriptional antiterminator, BglG
232	 33.10	0	251843..253117	+	424	167038907	-	Teth514_0238	-	ascorbate-specific PTS system enzyme IIC
233	 29.00	-1	253135..253434	+	99	167038908	-	Teth514_0239	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
234	 30.91	0	253450..254193	+	247	167038909	-	Teth514_0240	-	hypothetical protein
235	 36.15	0	254439..255608	+	389	167038910	-	Teth514_0241	-	iron-containing alcohol dehydrogenase
236	 37.63	0	255763..258252	+	829	167038911	-	Teth514_0242	-	1A family penicillin-binding protein
237	 29.84	-1	258344..260692	+	782	167038912	-	Teth514_0243	-	hypothetical protein
238	 34.45	0	260717..261877	+	386	167038913	-	Teth514_0244	-	aminopeptidase-like protein
239	 28.28	-1	261931..262227	+	98	167038914	-	Teth514_0245	-	regulatory protein, ArsR
240	 37.04	0	262321..262536	+	71	167038915	-	Teth514_0246	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
241	 35.52	0	262542..262907	+	121	167038916	-	Teth514_0247	-	heterodisulfide reductase subunit A and related polyferredoxins-like protein
242	 31.30	0	263711..264694	+	327	167038917	-	Teth514_0249	-	hypothetical protein
243	 33.06	0	264695..265792	+	365	167038918	-	Teth514_0250	-	hypothetical protein
244	 38.01	0	265799..266761	+	320	167038919	-	Teth514_0251	-	putative CoA-substrate-specific enzyme activase
245	 32.11	0	266803..267291	-	162	167038920	-	Teth514_0252	-	hypothetical protein
246	 34.58	0	267461..268183	+	240	167038921	-	Teth514_0253	-	ABC transporter related
247	 36.24	0	268184..268939	+	251	167038922	-	Teth514_0254	-	hypothetical protein
248	 37.82	0	269275..271725	+	816	167038923	-	Teth514_0255	-	leucyl-tRNA synthetase
249	 33.33	0	271791..272492	+	233	167038924	-	Teth514_0256	-	AzlC family protein
250	 28.40	-1	272474..272797	+	107	167038925	-	Teth514_0257	-	branched-chain amino acid transport
251	 34.91	0	272888..274030	+	380	167038926	-	Teth514_0258	-	ribokinase-like domain-containing protein
252	 35.39	0	274027..274950	+	307	167038927	-	Teth514_0259	-	indigoidine synthase A family protein
253	 33.72	0	274965..275222	-	85	167038928	-	Teth514_0260	-	small acid-soluble spore protein Tlp
254	 32.22	0	275380..278085	+	901	167038929	-	Teth514_0261	-	sigma-54 factor interaction domain-containing protein
255	 36.36	0	278253..279539	+	428	167038930	-	Teth514_0262	-	PTS system lactose/cellobiose family IIC subunit
256	 29.73	-1	279600..280349	+	249	167038931	-	Teth514_0263	-	YdjC family protein
257	 31.41	0	280377..280688	+	103	167038932	-	Teth514_0264	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
258	 34.53	0	280707..281039	+	110	167038933	-	Teth514_0265	-	phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
259	 35.55	0	281032..282342	+	436	167038934	-	Teth514_0266	-	glycoside hydrolase family protein
260	 33.84	0	282440..283834	+	464	167038935	-	Teth514_0267	-	Beta-glucosidase
261	 39.00	+1	283984..285429	+	481	167038936	-	Teth514_0268	-	PTS system, mannitol-specific IIC subunit
262	 30.45	0	285445..287487	+	680	167038937	-	Teth514_0269	-	transcriptional antiterminator, BglG
263	 29.93	-1	287480..287920	+	146	167038938	-	Teth514_0270	-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
264	 30.33	-1	287922..289088	+	388	167038939	-	Teth514_0271	-	mannitol-1-phosphate 5-dehydrogenase
265	 37.04	0	289456..293310	+	1284	167038940	-	Teth514_0272	-	5'-nucleotidase domain-containing protein
266	 34.48	0	293364..294407	+	347	167038941	-	Teth514_0273	-	nifR3 family TIM-barrel protein
267	 32.15	0	294439..295200	+	253	167038942	-	Teth514_0274	-	hypothetical protein
268	 31.26	0	295239..296009	+	256	167038943	-	Teth514_0275	-	hypothetical protein
269	 37.36	0	296392..297186	-	264	167038944	-	Teth514_0276	-	ABC-3 protein
270	 32.68	0	297179..297943	-	254	167038945	-	Teth514_0277	-	ABC transporter related
271	 33.90	0	297950..298831	-	293	167038946	-	Teth514_0278	-	periplasmic solute binding protein
272	 31.41	0	298850..299266	-	138	167038947	-	Teth514_0279	-	ferric uptake regulator family protein
273	 35.14	0	299459..300397	+	312	167038948	-	Teth514_0280	-	ATPase
274	 31.93	0	300417..301559	+	380	167038949	-	Teth514_0281	-	hypothetical protein
275	 29.26	-1	301543..302868	+	441	167038950	-	Teth514_0282	-	hypothetical protein
276	 34.20	0	302938..303516	+	192	167038951	-	Teth514_0283	-	LemA family protein
277	 43.50	+2	303665..304549	-	294	167038952	-	Teth514_0284	-	LysR family transcriptional regulator
278	 37.81	0	304983..306032	+	349	167038953	-	Teth514_0285	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
279	 35.98	0	306060..306851	+	263	167038954	-	Teth514_0286	-	anaerobic sulfite reductase subunit B
280	 38.95	+1	306868..307881	+	337	167038955	-	Teth514_0287	-	nitrite and sulphite reductase 4Fe-4S region
281	 37.66	0	308815..310062	+	415	167038956	-	Teth514_0289	-	SufS subfamily cysteine desulfurase
282	 37.68	0	310059..310472	+	137	167038957	-	Teth514_0290	-	NifU family SUF system FeS assembly protein
283	 40.73	+1	310749..311546	+	265	167038958	-	Teth514_0291	-	hypothetical protein
284	 33.16	0	311607..312179	-	190	167038959	-	Teth514_0292	-	hypothetical protein
285	 34.92	0	312333..313466	+	377	167038960	-	Teth514_0293	-	putative RNA methylase
286	 34.07	0	313540..313809	+	89	167038961	-	Teth514_0294	-	hypothetical protein
287	 38.48	+1	313796..314164	+	122	167038962	-	Teth514_0295	-	transcriptional modulator of MazE/toxin, MazF
288	 35.97	0	314535..315482	+	315	167038963	-	Teth514_0296	-	periplasmic binding protein
289	 36.76	0	315484..316476	+	330	167038964	-	Teth514_0297	-	transport system permease protein
290	 33.08	0	316481..317281	+	266	167038965	-	Teth514_0298	-	ABC transporter related
291	 35.57	0	317274..318656	+	460	167038966	-	Teth514_0299	-	cobyrinic acid a,c-diamide synthase
292	 35.70	0	318658..320181	+	507	167038967	-	Teth514_0300	-	cobyric acid synthase
293	 35.88	0	320181..321122	+	313	167038968	-	Teth514_0301	-	cobalamin biosynthesis protein CobD
294	 36.63	0	321194..321679	+	161	167038969	-	Teth514_0302	-	hypothetical protein
295	 35.79	0	321683..322414	+	243	167038970	-	Teth514_0303	-	hypothetical protein
296	 32.23	0	322438..323523	+	361	167038971	-	Teth514_0304	-	putative L-threonine-O-3-phosphate decarboxylase
297	 36.94	0	323524..324078	+	184	167038972	-	Teth514_0305	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
298	 33.60	0	324101..324853	+	250	167038973	-	Teth514_0306	-	cobalamin synthase
299	 31.97	0	324870..325235	+	121	167038974	-	Teth514_0307	-	cobalamin (vitamin B12) biosynthesis CbiX protein
300	 35.74	0	325267..325890	+	207	167038975	-	Teth514_0308	-	precorrin-8X methylmutase CbiC/CobH
301	 40.42	+1	325923..327023	+	366	167038976	-	Teth514_0309	-	cobalamin biosynthesis protein CbiD
302	 36.11	0	327017..327628	+	203	167038977	-	Teth514_0310	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
303	 35.04	0	327613..328197	+	194	167038978	-	Teth514_0311	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
304	 36.89	0	328199..328873	+	224	167038979	-	Teth514_0312	-	precorrin-2 C20-methyltransferase
305	 36.90	0	328876..329631	+	251	167038980	-	Teth514_0313	-	precorrin-4 C11-methyltransferase
306	 36.19	0	329628..330677	+	349	167038981	-	Teth514_0314	-	cobalamin biosynthesis protein CbiG
307	 37.16	0	330650..331381	+	243	167038982	-	Teth514_0315	-	precorrin-3B C17-methyltransferase
308	 34.67	0	331378..332127	+	249	167038983	-	Teth514_0316	-	precorrin-6x reductase
309	 32.58	0	332114..333301	+	395	167038984	-	Teth514_0317	-	glutamyl-tRNA reductase
310	 36.22	0	333317..334216	+	299	167038985	-	Teth514_0318	-	porphobilinogen deaminase
311	 34.14	0	334216..335709	+	497	167038986	-	Teth514_0319	-	uroporphyrin-III C-methyltransferase
312	 37.64	0	335724..336698	+	324	167038987	-	Teth514_0320	-	delta-aminolevulinic acid dehydratase
313	 37.16	0	336680..338560	+	626	167038988	-	Teth514_0321	-	glutamate-1-semialdehyde-2,1-aminomutase
314	 46.27	+2	338666..338920	+	84	167038989	-	Teth514_0322	-	hypothetical protein
315	 39.47	+1	339027..339776	+	249	167038990	-	Teth514_0323	-	cobalt transport protein CbiM
316	 38.10	0	339773..340066	+	97	167038991	-	Teth514_0324	-	cobalt transport protein
317	 28.52	-1	340053..340820	+	255	167038992	-	Teth514_0325	-	cobalt ABC transporter, inner membrane subunit CbiQ
318	 32.73	0	340824..341654	+	276	167038993	-	Teth514_0326	-	cobalt ABC transporter, ATPase subunit
319	 36.47	0	341882..343093	-	403	167038994	-	Teth514_0327	-	isocitrate dehydrogenase
320	 27.40	-1	343233..343451	-	72	167038995	-	Teth514_0328	-	hypothetical protein
321	 30.86	0	343875..344603	+	242	167038996	-	Teth514_0329	-	ABC transporter related
322	 32.82	0	344606..345385	+	259	167038997	-	Teth514_0330	-	ABC-2 type transporter
323	 43.27	+2	345429..346112	-	227	167038998	-	Teth514_0331	-	rhomboid family protein
324	 33.77	0	346421..346651	+	76	167038999	-	Teth514_0332	-	hypothetical protein
325	 27.58	-1	346814..347143	+	109	167039000	-	Teth514_0333	-	hypothetical protein
326	 25.37	-2	347195..347533	+	112	167039001	-	Teth514_0334	-	hypothetical protein
327	 29.14	-1	347714..348190	+	158	167039002	-	Teth514_0335	-	GCN5-related N-acetyltransferase
328	 30.70	0	348210..348968	+	252	167039003	-	Teth514_0336	-	hypothetical protein
329	 34.00	0	348971..349567	+	198	167039004	-	Teth514_0337	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.