IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2250	 36.60	0	2331258..2332514	-	418	167040925	-	Teth514_2311	-	homoserine dehydrogenase
2251	 34.92	0	2332527..2332967	-	146	167040926	-	Teth514_2312	-	hypothetical protein
2252	 35.13	0	2333174..2333953	-	259	167040927	-	Teth514_2313	-	beta-lactamase domain-containing protein
2253	 28.79	-1	2336260..2336523	-	87	167040928	-	Teth514_2316	-	CRISPR-associated Cas2 family protein
2254	 29.51	-1	2336540..2337532	-	330	167040929	-	Teth514_2317	-	CRISPR-associated Cas1 family protein
2255	 32.33	0	2337529..2338026	-	165	167040930	-	Teth514_2318	-	CRISPR-associated Cas4 family protein
2256	 36.63	0	2338232..2338960	-	242	167040931	-	Teth514_2319	-	peptidase S51, dipeptidase E
2257	 39.07	+1	2341429..2342649	+	406	167040932	-	Teth514_2321	-	transposase IS116/IS110/IS902 family protein
2258	 39.07	+1	2347196..2348416	+	406	167040933	-	Teth514_2322	-	transposase IS116/IS110/IS902 family protein
2259	 26.62	-1	2363263..2365599	-	778	167040934	-	Teth514_2323	-	CRISPR-associated helicase Cas3
2260	 30.80	0	2365614..2366324	-	236	167040935	-	Teth514_2324	-	CRISPR-associated Cas5 family Hmari subtype protein
2261	 30.27	-1	2366339..2367220	-	293	167040936	-	Teth514_2325	-	CRISPR-associated Csh2 family protein
2262	 28.34	-1	2367207..2369189	-	660	167040937	-	Teth514_2326	-	CRISPR-associated Csh1 family protein
2263	 29.37	-1	2369244..2369999	-	251	167040938	-	Teth514_2327	-	CRISPR-associated Cas family protein
2264	 38.16	0	2370188..2370601	-	137	167040939	-	Teth514_2328	-	NifU family SUF system FeS assembly protein
2265	 36.99	0	2370598..2371827	-	409	167040940	-	Teth514_2329	-	SufS subfamily cysteine desulfurase
2266	 34.95	0	2371824..2372873	-	349	167040941	-	Teth514_2330	-	SufBD protein
2267	 39.32	+1	2372884..2374287	-	467	167040942	-	Teth514_2331	-	FeS assembly protein SufB
2268	 35.61	0	2374307..2375053	-	248	167040943	-	Teth514_2332	-	FeS assembly ATPase SufC
2269	 37.89	0	2375241..2375525	-	94	167040944	-	Teth514_2333	-	chaperonin Cpn10
2270	 36.41	0	2375617..2376201	-	194	167040945	-	Teth514_2334	-	YruB family glutaredoxin-like protein
2271	 47.51	+2	2376434..2376694	-	86	167040946	-	Teth514_2335	-	hypothetical protein
2272	 29.53	-1	2376788..2377786	-	332	167040947	-	Teth514_2336	-	DNA repair photolyase-like protein
2273	 28.77	-1	2377758..2378633	-	291	167040948	-	Teth514_2337	-	hypothetical protein
2274	 36.12	0	2378648..2379868	-	406	167040949	-	Teth514_2338	-	tyrosyl-tRNA synthetase
2275	 30.10	-1	2380000..2380401	+	133	167040950	-	Teth514_2339	-	hypothetical protein
2276	 28.85	-1	2380392..2380859	-	155	167040951	-	Teth514_2340	-	hypothetical protein
2277	 34.52	0	2380877..2381044	-	55	167040952	-	Teth514_2341	-	hypothetical protein
2278	 34.87	0	2381055..2382158	-	367	167040953	-	Teth514_2342	-	peptidase S1 and S6, chymotrypsin/Hap
2279	 38.84	+1	2382224..2383477	-	417	167040954	-	Teth514_2343	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2280	 28.87	-1	2383623..2384429	-	268	167040955	-	Teth514_2344	-	hypothetical protein
2281	 34.29	0	2384607..2385965	-	452	167040956	-	Teth514_2345	-	peptidase M23B
2282	 33.64	0	2386203..2387177	+	324	167040957	-	Teth514_2346	-	primosome, DnaD subunit
2283	 28.05	-1	2387170..2388153	+	327	167040958	-	Teth514_2347	-	DNA replication protein DnaC
2284	 31.88	0	2388150..2389592	-	480	167040959	-	Teth514_2348	-	peptidase M1, membrane alanine aminopeptidase
2285	 35.66	0	2389702..2390949	-	415	167040960	-	Teth514_2349	-	hypothetical protein
2286	 33.33	0	2391085..2392278	-	397	167040961	-	Teth514_2350	-	IS605 family transposase OrfB
2287	 33.33	0	2392384..2393340	-	318	167040962	-	Teth514_2351	-	beta-lactamase domain-containing protein
2288	 33.78	0	2393391..2393612	-	73	167040963	-	Teth514_2352	-	hypothetical protein
2289	 38.29	0	2394209..2396002	-	597	167040964	-	Teth514_2353	-	peptidase S9 prolyl oligopeptidase
2290	 36.46	0	2396099..2397379	-	426	167040965	-	Teth514_2354	-	adenylosuccinate synthetase
2291	 36.59	0	2397395..2398777	-	460	167040966	-	Teth514_2355	-	FAD dependent oxidoreductase
2292	 34.70	0	2398983..2400230	-	415	167040967	-	Teth514_2356	-	methyl-accepting chemotaxis sensory transducer
2293	 34.50	0	2400288..2400458	-	56	167040968	-	Teth514_2357	-	hypothetical protein
2294	 42.68	+2	2400625..2401983	-	452	167040969	-	Teth514_2358	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2295	 35.87	0	2402280..2404091	-	603	167040970	-	Teth514_2359	-	oligoendopeptidase F
2296	 47.40	+2	2404283..2404801	-	172	167040971	-	Teth514_2360	-	chromate transporter
2297	 44.81	+2	2404798..2405337	-	179	167040972	-	Teth514_2361	-	chromate transporter
2298	 43.17	+2	2405602..2406231	-	209	167040973	-	Teth514_2362	-	V-type ATP synthase subunit D
2299	 47.54	+2	2406231..2407610	-	459	167040974	-	Teth514_2363	-	V-type ATP synthase subunit B
2300	 49.80	+2	2407603..2409375	-	590	167040975	-	Teth514_2364	-	ATP synthase, A subunit
2301	 38.99	+1	2409372..2409707	-	111	167040976	-	Teth514_2365	-	V-type ATP synthase subunit F
2302	 42.19	+1	2409694..2410698	-	334	167040977	-	Teth514_2366	-	V-type ATP synthase subunit C
2303	 41.79	+1	2410704..2411306	-	200	167040978	-	Teth514_2367	-	H+-transporting two-sector ATPase, E subunit
2304	 43.41	+2	2411319..2411864	-	181	167040979	-	Teth514_2368	-	V-type ATP synthase subunit K
2305	 41.77	+1	2411842..2413773	-	643	167040980	-	Teth514_2369	-	H(+)-transporting two-sector ATPase
2306	 39.20	+1	2413760..2414083	-	107	167040981	-	Teth514_2370	-	hypothetical protein
2307	 48.94	+2	2414329..2415558	-	409	167040982	-	Teth514_2371	-	uracil-xanthine permease
2308	 29.61	-1	2415778..2417148	-	456	167040983	-	Teth514_2372	-	hypothetical protein
2309	 33.55	0	2417175..2418110	-	311	167040984	-	Teth514_2373	-	hypothetical protein
2310	 36.62	0	2418649..2418861	-	70	167040985	-	Teth514_2374	-	hypothetical protein
2311	 33.33	0	2419084..2419761	-	225	167040986	-	Teth514_2375	-	ABC transporter related
2312	 29.79	-1	2419764..2420891	-	375	167040987	-	Teth514_2376	-	hypothetical protein
2313	 29.01	-1	2420875..2421939	-	354	167040988	-	Teth514_2377	-	hypothetical protein
2314	 32.65	0	2422071..2422508	-	145	167040989	-	Teth514_2378	-	hypothetical protein
2315	 32.91	0	2422875..2423345	+	156	167040990	-	Teth514_2379	-	hypothetical protein
2316	 35.42	0	2423527..2424678	-	383	167040991	-	Teth514_2380	-	hypothetical protein
2317	 30.46	0	2425706..2426122	-	138	167040992	-	Teth514_2381	-	hypothetical protein
2318	 37.84	0	2426773..2428347	-	524	167040993	-	Teth514_2382	-	phosphoesterase domain-containing protein
2319	 28.31	-1	2429417..2430133	-	238	167040994	-	Teth514_2383	-	hypothetical protein
2320	 32.38	0	2430148..2430567	-	139	167040995	-	Teth514_2384	-	hypothetical protein
2321	 28.72	-1	2431069..2431350	+	93	167040996	-	Teth514_2385	-	hypothetical protein
2322	 33.78	0	2431487..2432164	-	225	167040997	-	Teth514_2386	-	CRP/FNR family transcriptional regulator
2323	 38.75	+1	2432201..2433529	-	442	167040998	-	Teth514_2387	-	replicative DNA helicase
2324	 34.68	0	2433552..2433995	-	147	167040999	-	Teth514_2388	-	ribosomal protein L9
2325	 30.91	0	2435977..2436885	-	302	167041000	-	Teth514_2390	-	hypothetical protein
2326	 26.86	-1	2436890..2437198	-	102	167041001	-	Teth514_2391	-	hypothetical protein
2327	 37.45	0	2437279..2437545	-	88	167041002	-	Teth514_2392	-	30S ribosomal protein S18
2328	 38.41	+1	2437561..2438013	-	150	167041003	-	Teth514_2393	-	single-strand binding protein
2329	 34.03	0	2438045..2438332	-	95	167041004	-	Teth514_2394	-	30S ribosomal protein S6
2330	 32.85	0	2438400..2438606	-	68	167041005	-	Teth514_2395	-	hypothetical protein
2331	 31.57	0	2438686..2439537	-	283	167041006	-	Teth514_2396	-	MscS mechanosensitive ion channel
2332	 34.93	0	2439689..2440252	+	187	167041007	-	Teth514_2397	-	hypothetical protein
2333	 35.27	0	2440834..2443464	-	876	167041008	-	Teth514_2398	-	cyanophycin synthetase
2334	 36.37	0	2443461..2444282	-	273	167041009	-	Teth514_2399	-	cyanophycinase
2335	 34.59	0	2444366..2445238	-	290	167041010	-	Teth514_2400	-	diacylglycerol kinase, catalytic region
2336	 28.17	-1	2445258..2445761	-	167	167041011	-	Teth514_2401	-	hypothetical protein
2337	 36.83	0	2445781..2446923	-	380	167041012	-	Teth514_2402	-	cysteine desulfurase family protein
2338	 32.87	0	2447400..2448260	-	286	167041013	-	Teth514_2403	-	parB-like partition protein
2339	 34.11	0	2448285..2449052	-	255	167041014	-	Teth514_2404	-	cobyrinic acid a,c-diamide synthase
2340	 32.84	0	2449172..2449978	-	268	167041015	-	Teth514_2405	-	parB-like partition protein
2341	 33.56	0	2450081..2450527	-	148	167041016	-	Teth514_2406	-	NUDIX hydrolase
2342	 30.98	0	2450867..2451589	-	240	167041017	-	Teth514_2407	-	methyltransferase GidB
2343	 35.38	0	2451570..2453471	-	633	167041018	-	Teth514_2408	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2344	 32.47	0	2453480..2454862	-	460	167041019	-	Teth514_2409	-	tRNA modification GTPase TrmE
2345	 35.27	0	2454956..2455576	-	206	167041020	-	Teth514_2410	-	single-stranded nucleic acid binding R3H domain-containing protein
2346	 32.05	0	2455578..2456198	-	206	167041021	-	Teth514_2411	-	60 kDa inner membrane insertion protein
2347	 33.33	0	2456217..2456426	-	69	167041022	-	Teth514_2412	-	hypothetical protein
2348	 26.50	-1	2456423..2456773	-	116	167041023	-	Teth514_2413	-	ribonuclease P
2349	 36.30	0	2456810..2456944	-	44	167041024	-	Teth514_2414	-	50S ribosomal protein L34
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.