IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
184	 35.25	0	192242..192970	-	242	167038859	-	Teth514_0189	-	ABC transporter related
185	 29.66	-1	192982..193797	-	271	167038860	-	Teth514_0190	-	cobalt ABC transporter, inner membrane subunit CbiQ
186	 35.85	0	193790..194107	-	105	167038861	-	Teth514_0191	-	hypothetical protein
187	 36.80	0	194104..194796	-	230	167038862	-	Teth514_0192	-	cobalt transport protein CbiM
188	 33.56	0	194810..195241	-	143	167038863	-	Teth514_0193	-	nickel responsive regulator
189	 36.09	0	195623..196093	+	156	167038864	-	Teth514_0194	-	tRNA/rRNA methyltransferase (SpoU)
190	 34.62	0	196112..197281	+	389	167038865	-	Teth514_0195	-	DNA-directed DNA polymerase
191	 39.23	+1	198013..199233	+	406	167038866	-	Teth514_0197	-	transposase IS116/IS110/IS902 family protein
192	 35.76	0	200338..201903	+	521	167038867	-	Teth514_0198	-	RND family efflux transporter MFP subunit
193	 35.06	0	201907..202599	+	230	167038868	-	Teth514_0199	-	ABC transporter related
194	 36.48	0	202596..203771	+	391	167038869	-	Teth514_0200	-	hypothetical protein
195	 39.51	+1	203991..204719	+	242	167038870	-	Teth514_0201	-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase
196	 33.10	0	205069..208518	+	1149	167038871	-	Teth514_0202	-	ATP-dependent nuclease subunit B-like protein
197	 34.76	0	208499..212200	+	1233	167038872	-	Teth514_0203	-	UvrD-like DNA helicase, C terminal
198	 35.80	0	212353..213570	+	405	167038873	-	Teth514_0204	-	nuclease SbcCD, D subunit
199	 31.36	0	213542..217084	+	1180	167038874	-	Teth514_0205	-	SMC domain-containing protein
200	 38.15	0	217106..218143	-	345	167038875	-	Teth514_0206	-	aromatic amino acid beta-eliminating lyase/threonine aldolase
201	 36.27	0	218284..218931	-	215	167038876	-	Teth514_0207	-	putative peroxiredoxin
202	 28.28	-1	218950..219384	-	144	167038877	-	Teth514_0208	-	ferric uptake regulator family protein
203	 32.20	0	219401..219577	-	58	167038878	-	Teth514_0209	-	hypothetical protein
204	 34.77	0	219900..220871	+	323	167038879	-	Teth514_0210	-	galactose-1-phosphate uridylyltransferase
205	 28.90	-1	220896..222473	+	525	167038880	-	Teth514_0211	-	hypothetical protein
206	 34.28	0	222466..223632	+	388	167038881	-	Teth514_0212	-	glycogen synthase
207	 37.04	0	223716..224336	+	206	167038882	-	Teth514_0213	-	hypothetical protein
208	 35.77	0	224444..225181	-	245	167038883	-	Teth514_0214	-	hypothetical protein
209	 26.67	-1	225367..225891	-	174	167038884	-	Teth514_0215	-	hypothetical protein
210	 37.61	0	226042..226977	+	311	167038885	-	Teth514_0216	-	L-lactate dehydrogenase
211	 29.19	-1	227065..227523	+	152	167038886	-	Teth514_0217	-	hypothetical protein
212	 33.06	0	227525..228625	+	366	167038887	-	Teth514_0218	-	dehydrogenase (flavoprotein)-like protein
213	 30.52	0	228628..229695	+	355	167038888	-	Teth514_0219	-	dehydrogenase (flavoprotein)-like protein
214	 36.60	0	229704..230132	-	142	167038889	-	Teth514_0220	-	hypothetical protein
215	 37.70	0	230489..230740	+	83	167038890	-	Teth514_0221	-	fructose 1 6-bisphosphatase-like protein
216	 31.79	0	230956..231930	+	324	167038891	-	Teth514_0222	-	periplasmic binding protein/LacI transcriptional regulator
217	 30.68	0	231940..233448	+	502	167038892	-	Teth514_0223	-	integral membrane sensor signal transduction histidine kinase
218	 29.12	-1	233441..235054	+	537	167038893	-	Teth514_0224	-	response regulator receiver protein
219	 35.83	0	235044..236126	+	360	167038894	-	Teth514_0225	-	monosaccharide-transporting ATPase
220	 35.56	0	236301..237425	+	374	167038895	-	Teth514_0226	-	ABC-type xylose transport system periplasmic component-like protein
221	 33.92	0	237443..238966	+	507	167038896	-	Teth514_0227	-	ABC transporter related
222	 34.51	0	238981..240171	+	396	167038897	-	Teth514_0228	-	monosaccharide-transporting ATPase
223	 38.42	+1	240226..241680	-	484	167038898	-	Teth514_0229	-	glycine dehydrogenase subunit 2
224	 37.50	0	241677..243020	-	447	167038899	-	Teth514_0230	-	glycine dehydrogenase subunit 1
225	 39.63	+1	243025..243405	-	126	167038900	-	Teth514_0231	-	glycine cleavage system H protein
226	 33.69	0	243418..244524	-	368	167038901	-	Teth514_0232	-	glycine cleavage system aminomethyltransferase T
227	 30.99	0	244872..245852	+	326	167038902	-	Teth514_0233	-	lipoyltransferase and lipoate-protein ligase
228	 36.78	0	246037..247692	+	551	167038903	-	Teth514_0234	-	dihydrolipoamide dehydrogenase
229	 38.29	0	247782..248225	+	147	167038904	-	Teth514_0235	-	OsmC family protein
230	 38.13	0	248334..249500	+	388	167038905	-	Teth514_0236	-	aminotransferase, class I and II
231	 33.14	0	249633..251750	+	705	167038906	-	Teth514_0237	-	transcriptional antiterminator, BglG
232	 33.10	0	251843..253117	+	424	167038907	-	Teth514_0238	-	ascorbate-specific PTS system enzyme IIC
233	 29.00	-1	253135..253434	+	99	167038908	-	Teth514_0239	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
234	 30.91	0	253450..254193	+	247	167038909	-	Teth514_0240	-	hypothetical protein
235	 36.15	0	254439..255608	+	389	167038910	-	Teth514_0241	-	iron-containing alcohol dehydrogenase
236	 37.63	0	255763..258252	+	829	167038911	-	Teth514_0242	-	1A family penicillin-binding protein
237	 29.84	-1	258344..260692	+	782	167038912	-	Teth514_0243	-	hypothetical protein
238	 34.45	0	260717..261877	+	386	167038913	-	Teth514_0244	-	aminopeptidase-like protein
239	 28.28	-1	261931..262227	+	98	167038914	-	Teth514_0245	-	regulatory protein, ArsR
240	 37.04	0	262321..262536	+	71	167038915	-	Teth514_0246	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
241	 35.52	0	262542..262907	+	121	167038916	-	Teth514_0247	-	heterodisulfide reductase subunit A and related polyferredoxins-like protein
242	 31.30	0	263711..264694	+	327	167038917	-	Teth514_0249	-	hypothetical protein
243	 33.06	0	264695..265792	+	365	167038918	-	Teth514_0250	-	hypothetical protein
244	 38.01	0	265799..266761	+	320	167038919	-	Teth514_0251	-	putative CoA-substrate-specific enzyme activase
245	 32.11	0	266803..267291	-	162	167038920	-	Teth514_0252	-	hypothetical protein
246	 34.58	0	267461..268183	+	240	167038921	-	Teth514_0253	-	ABC transporter related
247	 36.24	0	268184..268939	+	251	167038922	-	Teth514_0254	-	hypothetical protein
248	 37.82	0	269275..271725	+	816	167038923	-	Teth514_0255	-	leucyl-tRNA synthetase
249	 33.33	0	271791..272492	+	233	167038924	-	Teth514_0256	-	AzlC family protein
250	 28.40	-1	272474..272797	+	107	167038925	-	Teth514_0257	-	branched-chain amino acid transport
251	 34.91	0	272888..274030	+	380	167038926	-	Teth514_0258	-	ribokinase-like domain-containing protein
252	 35.39	0	274027..274950	+	307	167038927	-	Teth514_0259	-	indigoidine synthase A family protein
253	 33.72	0	274965..275222	-	85	167038928	-	Teth514_0260	-	small acid-soluble spore protein Tlp
254	 32.22	0	275380..278085	+	901	167038929	-	Teth514_0261	-	sigma-54 factor interaction domain-containing protein
255	 36.36	0	278253..279539	+	428	167038930	-	Teth514_0262	-	PTS system lactose/cellobiose family IIC subunit
256	 29.73	-1	279600..280349	+	249	167038931	-	Teth514_0263	-	YdjC family protein
257	 31.41	0	280377..280688	+	103	167038932	-	Teth514_0264	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
258	 34.53	0	280707..281039	+	110	167038933	-	Teth514_0265	-	phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
259	 35.55	0	281032..282342	+	436	167038934	-	Teth514_0266	-	glycoside hydrolase family protein
260	 33.84	0	282440..283834	+	464	167038935	-	Teth514_0267	-	Beta-glucosidase
261	 39.00	+1	283984..285429	+	481	167038936	-	Teth514_0268	-	PTS system, mannitol-specific IIC subunit
262	 30.45	0	285445..287487	+	680	167038937	-	Teth514_0269	-	transcriptional antiterminator, BglG
263	 29.93	-1	287480..287920	+	146	167038938	-	Teth514_0270	-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
264	 30.33	-1	287922..289088	+	388	167038939	-	Teth514_0271	-	mannitol-1-phosphate 5-dehydrogenase
265	 37.04	0	289456..293310	+	1284	167038940	-	Teth514_0272	-	5'-nucleotidase domain-containing protein
266	 34.48	0	293364..294407	+	347	167038941	-	Teth514_0273	-	nifR3 family TIM-barrel protein
267	 32.15	0	294439..295200	+	253	167038942	-	Teth514_0274	-	hypothetical protein
268	 31.26	0	295239..296009	+	256	167038943	-	Teth514_0275	-	hypothetical protein
269	 37.36	0	296392..297186	-	264	167038944	-	Teth514_0276	-	ABC-3 protein
270	 32.68	0	297179..297943	-	254	167038945	-	Teth514_0277	-	ABC transporter related
271	 33.90	0	297950..298831	-	293	167038946	-	Teth514_0278	-	periplasmic solute binding protein
272	 31.41	0	298850..299266	-	138	167038947	-	Teth514_0279	-	ferric uptake regulator family protein
273	 35.14	0	299459..300397	+	312	167038948	-	Teth514_0280	-	ATPase
274	 31.93	0	300417..301559	+	380	167038949	-	Teth514_0281	-	hypothetical protein
275	 29.26	-1	301543..302868	+	441	167038950	-	Teth514_0282	-	hypothetical protein
276	 34.20	0	302938..303516	+	192	167038951	-	Teth514_0283	-	LemA family protein
277	 43.50	+2	303665..304549	-	294	167038952	-	Teth514_0284	-	LysR family transcriptional regulator
278	 37.81	0	304983..306032	+	349	167038953	-	Teth514_0285	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
279	 35.98	0	306060..306851	+	263	167038954	-	Teth514_0286	-	anaerobic sulfite reductase subunit B
280	 38.95	+1	306868..307881	+	337	167038955	-	Teth514_0287	-	nitrite and sulphite reductase 4Fe-4S region
281	 37.66	0	308815..310062	+	415	167038956	-	Teth514_0289	-	SufS subfamily cysteine desulfurase
282	 37.68	0	310059..310472	+	137	167038957	-	Teth514_0290	-	NifU family SUF system FeS assembly protein
283	 40.73	+1	310749..311546	+	265	167038958	-	Teth514_0291	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.