IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2163	 32.90	0	2217466..2218395	-	309	167040838	-	Teth514_2215	-	hypothetical protein
2164	 31.70	0	2218519..2219193	+	224	167040839	-	Teth514_2216	-	two component transcriptional regulator
2165	 31.25	0	2219196..2220536	+	446	167040840	-	Teth514_2217	-	integral membrane sensor signal transduction histidine kinase
2166	 36.88	0	2221719..2222480	-	253	167040841	-	Teth514_2219	-	NCAIR mutase (PurE)-related protein-like protein
2167	 34.73	0	2222470..2223330	-	286	167040842	-	Teth514_2220	-	ExsB family protein
2168	 30.43	-1	2223434..2223949	-	171	167040843	-	Teth514_2221	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2169	 29.49	-1	2224015..2224509	-	164	167040844	-	Teth514_2222	-	hypothetical protein
2170	 37.08	0	2225667..2227079	-	470	167040845	-	Teth514_2224	-	RNA-directed DNA polymerase (Reverse transcriptase)
2171	 34.86	0	2227528..2227986	-	152	167040846	-	Teth514_2225	-	hypothetical protein
2172	 36.34	0	2229121..2230518	+	465	167040847	-	Teth514_2227	-	EmrB/QacA family drug resistance transporter
2173	 39.22	+1	2230524..2230931	+	135	167040848	-	Teth514_2228	-	nucleoside-diphosphate kinase
2174	 30.06	-1	2230989..2231324	+	111	167040849	-	Teth514_2229	-	hypothetical protein
2175	 35.31	0	2231327..2234002	-	891	167040850	-	Teth514_2230	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
2176	 30.96	0	2234070..2234786	-	238	167040851	-	Teth514_2231	-	hypothetical protein
2177	 36.19	0	2234835..2235884	-	349	167040852	-	Teth514_2232	-	hypothetical protein
2178	 31.36	0	2236040..2236951	+	303	167040853	-	Teth514_2233	-	cell envelope-related transcriptional attenuator
2179	 31.92	0	2236962..2237741	-	259	167040854	-	Teth514_2234	-	protein-tyrosine-phosphatase
2180	 33.33	0	2237741..2238448	-	235	167040855	-	Teth514_2235	-	exopolysaccharide tyrosine-protein kinase
2181	 33.33	0	2238473..2239156	-	227	167040856	-	Teth514_2236	-	lipopolysaccharide biosynthesis protein
2182	 36.74	0	2239235..2240143	-	302	167040857	-	Teth514_2237	-	UTP-glucose-1-phosphate uridylyltransferase GalU
2183	 36.11	0	2240174..2241541	-	455	167040858	-	Teth514_2238	-	phosphomannomutase
2184	 29.63	-1	2241650..2242189	-	179	167040859	-	Teth514_2239	-	NusG antitermination factor
2185	 36.84	0	2242472..2243041	-	189	167040860	-	Teth514_2240	-	SNO glutamine amidotransferase
2186	 41.41	+1	2243043..2243921	-	292	167040861	-	Teth514_2241	-	pyridoxine biosynthesis protein
2187	 24.04	-2	2244274..2244714	-	146	167040862	-	Teth514_2243	-	hypothetical protein
2188	 29.93	-1	2244707..2245147	-	146	167040863	-	Teth514_2244	-	DNA polymerase beta subunit
2189	 33.80	0	2245186..2246481	-	431	167040864	-	Teth514_2245	-	hypothetical protein
2190	 35.16	0	2246474..2250640	-	1388	167040865	-	Teth514_2246	-	chromosome segregation ATPase-like protein
2191	 34.64	0	2250633..2251784	-	383	167040866	-	Teth514_2247	-	hypothetical protein
2192	 35.08	0	2251795..2253282	-	495	167040867	-	Teth514_2248	-	hypothetical protein
2193	 29.98	-1	2253467..2253973	-	168	167040868	-	Teth514_2249	-	hypothetical protein
2194	 31.75	0	2253970..2254347	-	125	167040869	-	Teth514_2250	-	DNA polymerase beta subunit
2195	 34.89	0	2254408..2255691	-	427	167040870	-	Teth514_2251	-	natural resistance-associated macrophage protein
2196	 43.54	+2	2255996..2256436	-	146	167040871	-	Teth514_2252	-	positive regulator of sigma E, RseC/MucC
2197	 51.00	+2	2256580..2258589	-	669	167040872	-	Teth514_2253	-	membrane-bound proton-translocating pyrophosphatase
2198	 33.95	0	2258800..2259288	-	162	167040873	-	Teth514_2254	-	putative small multi-drug export
2199	 34.20	0	2260033..2260950	-	305	167040874	-	Teth514_2256	-	aldo/keto reductase
2200	 34.77	0	2261142..2261696	-	184	167040875	-	Teth514_2257	-	phosphodiesterase
2201	 31.68	0	2262003..2262548	+	181	167040876	-	Teth514_2258	-	LemA family protein
2202	 36.56	0	2262569..2263468	+	299	167040877	-	Teth514_2259	-	peptidase M48, Ste24p
2203	 30.08	-1	2263509..2264522	+	337	167040878	-	Teth514_2260	-	hypothetical protein
2204	 45.65	+2	2264613..2264750	-	45	167040879	-	Teth514_2261	-	hypothetical protein
2205	 28.41	-1	2264936..2265199	-	87	167040880	-	Teth514_2262	-	addiction module antitoxin
2206	 31.01	0	2265184..2265441	-	85	167040881	-	Teth514_2263	-	prevent-host-death family protein
2207	 28.97	-1	2265822..2266073	-	83	167040882	-	Teth514_2264	-	hypothetical protein
2208	 28.41	-1	2266425..2267723	-	432	167040883	-	Teth514_2265	-	hypothetical protein
2209	 30.27	-1	2267742..2270153	-	803	167040884	-	Teth514_2266	-	ATPase
2210	 28.99	-1	2270267..2271349	-	360	167040885	-	Teth514_2267	-	hypothetical protein
2211	 35.76	0	2271990..2276813	-	1607	167040886	-	Teth514_2269	-	DEAD/DEAH box helicase domain-containing protein
2212	 32.38	0	2277078..2280650	-	1190	167040887	-	Teth514_2270	-	hypothetical protein
2213	 31.59	0	2280928..2281500	+	190	167040888	-	Teth514_2271	-	hypothetical protein
2214	 33.33	0	2281583..2282734	-	383	167040889	-	Teth514_2272	-	plasmid pRiA4b ORF-3 family protein
2215	 31.98	0	2282852..2283514	-	220	167040890	-	Teth514_2273	-	hypothetical protein
2216	 29.75	-1	2283873..2284820	-	315	167040891	-	Teth514_2274	-	lipopolysaccharide biosynthesis protein
2217	 33.80	0	2285034..2286107	-	357	167040892	-	Teth514_2275	-	mannose-1-phosphate guanylyltransferase (GDP)
2218	 29.98	-1	2286341..2287711	-	456	167040893	-	Teth514_2276	-	undecaprenyl-phosphate galactose phosphotransferase
2219	 32.52	0	2287775..2289130	-	451	167040894	-	Teth514_2277	-	UDP-glucose 6-dehydrogenase
2220	 31.08	0	2289219..2290328	-	369	167040895	-	Teth514_2278	-	glycosyl transferase, group 1
2221	 32.86	0	2290334..2290546	-	70	167040896	-	Teth514_2279	-	Serine acetyltransferase-like protein
2222	 28.89	-1	2290859..2292028	-	389	167040897	-	Teth514_2281	-	glycosyl transferase, group 1
2223	 31.18	0	2292103..2293263	-	386	167040898	-	Teth514_2282	-	glycosyl transferase, group 1
2224	 32.80	0	2293284..2294405	-	373	167040899	-	Teth514_2283	-	glycosyl transferase, group 1
2225	 27.81	-1	2294395..2295753	-	452	167040900	-	Teth514_2284	-	O-antigen polymerase
2226	 30.22	-1	2295911..2296777	-	288	167040901	-	Teth514_2285	-	hypothetical protein
2227	 29.08	-1	2296988..2298187	-	399	167040902	-	Teth514_2286	-	IS605 family transposase OrfB
2228	 30.48	0	2298566..2298775	-	69	167040903	-	Teth514_2288	-	site-specific integrase-resolvase-like protein
2229	 31.39	0	2299231..2300925	-	564	167040904	-	Teth514_2289	-	hypothetical protein
2230	 33.33	0	2300949..2302649	-	566	167040905	-	Teth514_2290	-	hypothetical protein
2231	 44.22	+2	2302841..2304190	-	449	167040906	-	Teth514_2291	-	magnesium transporter
2232	 37.69	0	2304756..2305766	+	336	167040907	-	Teth514_2293	-	membrane lipoprotein lipid attachment site
2233	 35.61	0	2305848..2306594	+	248	167040908	-	Teth514_2294	-	ABC transporter related
2234	 34.31	0	2306581..2307399	+	272	167040909	-	Teth514_2295	-	binding-protein-dependent transport systems inner membrane component
2235	 33.33	0	2307471..2309102	+	543	167040910	-	Teth514_2296	-	NAD+ synthetase
2236	 35.42	0	2309133..2309993	+	286	167040911	-	Teth514_2297	-	hypothetical protein
2237	 29.88	-1	2309970..2310548	-	192	167040912	-	Teth514_2298	-	small GTP-binding protein
2238	 35.22	0	2310538..2312874	-	778	167040913	-	Teth514_2299	-	ATP-dependent protease La
2239	 36.94	0	2312975..2314249	-	424	167040914	-	Teth514_2300	-	ATP-dependent protease ATP-binding subunit
2240	 39.29	+1	2314271..2314858	-	195	167040915	-	Teth514_2301	-	ATP-dependent Clp protease proteolytic subunit
2241	 31.95	0	2314864..2316162	-	432	167040916	-	Teth514_2302	-	trigger factor
2242	 31.03	0	2316474..2317517	-	347	167040917	-	Teth514_2303	-	integrase catalytic subunit
2243	 35.89	0	2317780..2319381	-	533	167040918	-	Teth514_2304	-	CTP synthetase
2244	 34.19	0	2319741..2320559	+	272	167040919	-	Teth514_2305	-	HisJ family histidinol phosphate phosphatase
2245	 36.28	0	2320608..2322203	-	531	167040920	-	Teth514_2306	-	D-3-phosphoglycerate dehydrogenase
2246	 37.40	0	2322217..2323299	-	360	167040921	-	Teth514_2307	-	alanine--glyoxylate transaminase
2247	 35.77	0	2323503..2328833	-	1776	167040922	-	Teth514_2308	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2248	 35.71	0	2329283..2330209	-	308	167040923	-	Teth514_2309	-	homoserine kinase
2249	 38.83	+1	2330199..2331254	-	351	167040924	-	Teth514_2310	-	threonine synthase
2250	 36.60	0	2331258..2332514	-	418	167040925	-	Teth514_2311	-	homoserine dehydrogenase
2251	 34.92	0	2332527..2332967	-	146	167040926	-	Teth514_2312	-	hypothetical protein
2252	 35.13	0	2333174..2333953	-	259	167040927	-	Teth514_2313	-	beta-lactamase domain-containing protein
2253	 28.79	-1	2336260..2336523	-	87	167040928	-	Teth514_2316	-	CRISPR-associated Cas2 family protein
2254	 29.51	-1	2336540..2337532	-	330	167040929	-	Teth514_2317	-	CRISPR-associated Cas1 family protein
2255	 32.33	0	2337529..2338026	-	165	167040930	-	Teth514_2318	-	CRISPR-associated Cas4 family protein
2256	 36.63	0	2338232..2338960	-	242	167040931	-	Teth514_2319	-	peptidase S51, dipeptidase E
2257	 39.07	+1	2341429..2342649	+	406	167040932	-	Teth514_2321	-	transposase IS116/IS110/IS902 family protein
2258	 39.07	+1	2347196..2348416	+	406	167040933	-	Teth514_2322	-	transposase IS116/IS110/IS902 family protein
2259	 26.62	-1	2363263..2365599	-	778	167040934	-	Teth514_2323	-	CRISPR-associated helicase Cas3
2260	 30.80	0	2365614..2366324	-	236	167040935	-	Teth514_2324	-	CRISPR-associated Cas5 family Hmari subtype protein
2261	 30.27	-1	2366339..2367220	-	293	167040936	-	Teth514_2325	-	CRISPR-associated Csh2 family protein
2262	 28.34	-1	2367207..2369189	-	660	167040937	-	Teth514_2326	-	CRISPR-associated Csh1 family protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.