IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2116	 36.02	0	2167312..2168463	+	383	167040791	-	Teth514_2168	-	hypothetical protein
2117	 29.77	-1	2168485..2168961	-	158	167040792	-	Teth514_2169	-	hypothetical protein
2118	 36.48	0	2168972..2170498	-	508	167040793	-	Teth514_2170	-	histidine ammonia-lyase
2119	 35.82	0	2170692..2170892	-	66	167040794	-	Teth514_2171	-	hypothetical protein
2120	 33.73	0	2170914..2171165	-	83	167040795	-	Teth514_2172	-	hypothetical protein
2121	 34.99	0	2171579..2172484	+	301	167040796	-	Teth514_2173	-	peptidase M23B
2122	 32.33	0	2172486..2172884	+	132	167040797	-	Teth514_2174	-	hypothetical protein
2123	 30.47	0	2173194..2174627	-	477	167040798	-	Teth514_2175	-	GntR family transcriptional regulator
2124	 35.88	0	2174761..2175936	+	391	167040799	-	Teth514_2176	-	isoaspartyl dipeptidase
2125	 34.03	0	2175957..2176529	-	190	167040800	-	Teth514_2177	-	response regulator receiver/ANTAR domain-containing protein
2126	 36.93	0	2176549..2177883	-	444	167040801	-	Teth514_2178	-	glutamine synthetase, type I
2127	 35.46	0	2178045..2178326	-	93	167040802	-	Teth514_2179	-	hypothetical protein
2128	 32.36	0	2178427..2180175	+	582	167040803	-	Teth514_2180	-	ABC transporter related
2129	 31.89	0	2180188..2181990	+	600	167040804	-	Teth514_2181	-	ABC transporter related
2130	 28.12	-1	2182039..2182863	+	274	167040805	-	Teth514_2182	-	hypothetical protein
2131	 37.17	0	2183017..2184006	+	329	167040806	-	Teth514_2183	-	aspartate-semialdehyde dehydrogenase
2132	 38.48	+1	2184020..2184913	+	297	167040807	-	Teth514_2184	-	dihydrodipicolinate synthase
2133	 35.98	0	2184913..2185668	+	251	167040808	-	Teth514_2185	-	dihydrodipicolinate reductase
2134	 38.57	+1	2185665..2186390	+	241	167040809	-	Teth514_2186	-	tetrahydrodipicolinate succinyltransferase domain-containing protein
2135	 36.17	0	2186417..2186944	-	175	167040810	-	Teth514_2187	-	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
2136	 34.88	0	2186981..2187628	-	215	167040811	-	Teth514_2188	-	single-strand DNA-binding protein
2137	 29.28	-1	2187741..2188283	-	180	167040812	-	Teth514_2189	-	Mur ligase middle domain-containing protein
2138	 35.63	0	2188382..2189077	-	231	167040813	-	Teth514_2190	-	cell wall hydrolase, SleB
2139	 31.89	0	2189191..2190504	-	437	167040814	-	Teth514_2191	-	sigma-54 factor interaction domain-containing protein
2140	 38.99	+1	2191002..2192732	+	576	167040815	-	Teth514_2192	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2141	 33.93	0	2192773..2195115	-	780	167040816	-	Teth514_2193	-	Kojibiose phosphorylase
2142	 37.83	0	2195193..2196437	-	414	167040817	-	Teth514_2194	-	extracellular solute-binding protein
2143	 35.38	0	2196508..2197338	-	276	167040818	-	Teth514_2195	-	binding-protein-dependent transport systems inner membrane component
2144	 35.43	0	2197338..2198195	-	285	167040819	-	Teth514_2196	-	binding-protein-dependent transport systems inner membrane component
2145	 34.22	0	2198288..2199301	-	337	167040820	-	Teth514_2197	-	periplasmic binding protein/LacI transcriptional regulator
2146	 33.33	0	2199423..2200070	-	215	167040821	-	Teth514_2198	-	beta-phosphoglucomutase
2147	 34.20	0	2200092..2200901	-	269	167040822	-	Teth514_2199	-	monosaccharide-transporting ATPase
2148	 33.33	0	2200915..2201814	-	299	167040823	-	Teth514_2200	-	binding-protein-dependent transport systems inner membrane component
2149	 37.13	0	2201890..2203152	-	420	167040824	-	Teth514_2201	-	extracellular solute-binding protein
2150	 35.05	0	2203296..2205623	-	775	167040825	-	Teth514_2202	-	Kojibiose phosphorylase
2151	 35.11	0	2205689..2206699	-	336	167040826	-	Teth514_2203	-	periplasmic binding protein/LacI transcriptional regulator
2152	 38.75	+1	2206748..2207449	-	233	167040827	-	Teth514_2204	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2153	 43.67	+2	2207587..2207886	+	99	167040828	-	Teth514_2205	-	small acid-soluble spore protein, alpha/beta type
2154	 27.71	-1	2208279..2208794	+	171	167040829	-	Teth514_2206	-	hypothetical protein
2155	 30.39	-1	2208781..2209698	-	305	167040830	-	Teth514_2207	-	hypothetical protein
2156	 33.76	0	2210414..2210647	-	77	167040831	-	Teth514_2208	-	hypothetical protein
2157	 34.26	0	2210690..2211979	-	429	167040832	-	Teth514_2209	-	FolC bifunctional protein
2158	 35.38	0	2212008..2212544	-	178	167040833	-	Teth514_2210	-	GCN5-related N-acetyltransferase
2159	 37.12	0	2212562..2215201	-	879	167040834	-	Teth514_2211	-	valyl-tRNA synthetase
2160	 35.22	0	2215582..2216004	+	140	167040835	-	Teth514_2212	-	hypothetical protein
2161	 34.43	0	2216140..2216688	+	182	167040836	-	Teth514_2213	-	BioY protein
2162	 38.15	0	2216705..2217265	-	186	167040837	-	Teth514_2214	-	hypothetical protein
2163	 32.90	0	2217466..2218395	-	309	167040838	-	Teth514_2215	-	hypothetical protein
2164	 31.70	0	2218519..2219193	+	224	167040839	-	Teth514_2216	-	two component transcriptional regulator
2165	 31.25	0	2219196..2220536	+	446	167040840	-	Teth514_2217	-	integral membrane sensor signal transduction histidine kinase
2166	 36.88	0	2221719..2222480	-	253	167040841	-	Teth514_2219	-	NCAIR mutase (PurE)-related protein-like protein
2167	 34.73	0	2222470..2223330	-	286	167040842	-	Teth514_2220	-	ExsB family protein
2168	 30.43	-1	2223434..2223949	-	171	167040843	-	Teth514_2221	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2169	 29.49	-1	2224015..2224509	-	164	167040844	-	Teth514_2222	-	hypothetical protein
2170	 37.08	0	2225667..2227079	-	470	167040845	-	Teth514_2224	-	RNA-directed DNA polymerase (Reverse transcriptase)
2171	 34.86	0	2227528..2227986	-	152	167040846	-	Teth514_2225	-	hypothetical protein
2172	 36.34	0	2229121..2230518	+	465	167040847	-	Teth514_2227	-	EmrB/QacA family drug resistance transporter
2173	 39.22	+1	2230524..2230931	+	135	167040848	-	Teth514_2228	-	nucleoside-diphosphate kinase
2174	 30.06	-1	2230989..2231324	+	111	167040849	-	Teth514_2229	-	hypothetical protein
2175	 35.31	0	2231327..2234002	-	891	167040850	-	Teth514_2230	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
2176	 30.96	0	2234070..2234786	-	238	167040851	-	Teth514_2231	-	hypothetical protein
2177	 36.19	0	2234835..2235884	-	349	167040852	-	Teth514_2232	-	hypothetical protein
2178	 31.36	0	2236040..2236951	+	303	167040853	-	Teth514_2233	-	cell envelope-related transcriptional attenuator
2179	 31.92	0	2236962..2237741	-	259	167040854	-	Teth514_2234	-	protein-tyrosine-phosphatase
2180	 33.33	0	2237741..2238448	-	235	167040855	-	Teth514_2235	-	exopolysaccharide tyrosine-protein kinase
2181	 33.33	0	2238473..2239156	-	227	167040856	-	Teth514_2236	-	lipopolysaccharide biosynthesis protein
2182	 36.74	0	2239235..2240143	-	302	167040857	-	Teth514_2237	-	UTP-glucose-1-phosphate uridylyltransferase GalU
2183	 36.11	0	2240174..2241541	-	455	167040858	-	Teth514_2238	-	phosphomannomutase
2184	 29.63	-1	2241650..2242189	-	179	167040859	-	Teth514_2239	-	NusG antitermination factor
2185	 36.84	0	2242472..2243041	-	189	167040860	-	Teth514_2240	-	SNO glutamine amidotransferase
2186	 41.41	+1	2243043..2243921	-	292	167040861	-	Teth514_2241	-	pyridoxine biosynthesis protein
2187	 24.04	-2	2244274..2244714	-	146	167040862	-	Teth514_2243	-	hypothetical protein
2188	 29.93	-1	2244707..2245147	-	146	167040863	-	Teth514_2244	-	DNA polymerase beta subunit
2189	 33.80	0	2245186..2246481	-	431	167040864	-	Teth514_2245	-	hypothetical protein
2190	 35.16	0	2246474..2250640	-	1388	167040865	-	Teth514_2246	-	chromosome segregation ATPase-like protein
2191	 34.64	0	2250633..2251784	-	383	167040866	-	Teth514_2247	-	hypothetical protein
2192	 35.08	0	2251795..2253282	-	495	167040867	-	Teth514_2248	-	hypothetical protein
2193	 29.98	-1	2253467..2253973	-	168	167040868	-	Teth514_2249	-	hypothetical protein
2194	 31.75	0	2253970..2254347	-	125	167040869	-	Teth514_2250	-	DNA polymerase beta subunit
2195	 34.89	0	2254408..2255691	-	427	167040870	-	Teth514_2251	-	natural resistance-associated macrophage protein
2196	 43.54	+2	2255996..2256436	-	146	167040871	-	Teth514_2252	-	positive regulator of sigma E, RseC/MucC
2197	 51.00	+2	2256580..2258589	-	669	167040872	-	Teth514_2253	-	membrane-bound proton-translocating pyrophosphatase
2198	 33.95	0	2258800..2259288	-	162	167040873	-	Teth514_2254	-	putative small multi-drug export
2199	 34.20	0	2260033..2260950	-	305	167040874	-	Teth514_2256	-	aldo/keto reductase
2200	 34.77	0	2261142..2261696	-	184	167040875	-	Teth514_2257	-	phosphodiesterase
2201	 31.68	0	2262003..2262548	+	181	167040876	-	Teth514_2258	-	LemA family protein
2202	 36.56	0	2262569..2263468	+	299	167040877	-	Teth514_2259	-	peptidase M48, Ste24p
2203	 30.08	-1	2263509..2264522	+	337	167040878	-	Teth514_2260	-	hypothetical protein
2204	 45.65	+2	2264613..2264750	-	45	167040879	-	Teth514_2261	-	hypothetical protein
2205	 28.41	-1	2264936..2265199	-	87	167040880	-	Teth514_2262	-	addiction module antitoxin
2206	 31.01	0	2265184..2265441	-	85	167040881	-	Teth514_2263	-	prevent-host-death family protein
2207	 28.97	-1	2265822..2266073	-	83	167040882	-	Teth514_2264	-	hypothetical protein
2208	 28.41	-1	2266425..2267723	-	432	167040883	-	Teth514_2265	-	hypothetical protein
2209	 30.27	-1	2267742..2270153	-	803	167040884	-	Teth514_2266	-	ATPase
2210	 28.99	-1	2270267..2271349	-	360	167040885	-	Teth514_2267	-	hypothetical protein
2211	 35.76	0	2271990..2276813	-	1607	167040886	-	Teth514_2269	-	DEAD/DEAH box helicase domain-containing protein
2212	 32.38	0	2277078..2280650	-	1190	167040887	-	Teth514_2270	-	hypothetical protein
2213	 31.59	0	2280928..2281500	+	190	167040888	-	Teth514_2271	-	hypothetical protein
2214	 33.33	0	2281583..2282734	-	383	167040889	-	Teth514_2272	-	plasmid pRiA4b ORF-3 family protein
2215	 31.98	0	2282852..2283514	-	220	167040890	-	Teth514_2273	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.