IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2074	 38.10	0	2131926..2132324	-	132	167040749	-	Teth514_2126	-	methylglyoxal synthase
2075	 35.88	0	2132336..2133433	-	365	167040750	-	Teth514_2127	-	rod shape-determining protein RodA
2076	 30.07	-1	2133520..2133795	-	91	167040751	-	Teth514_2128	-	cell division topological specificity factor MinE
2077	 34.46	0	2133817..2134614	-	265	167040752	-	Teth514_2129	-	septum site-determining protein MinD
2078	 34.26	0	2134652..2135296	-	214	167040753	-	Teth514_2130	-	septum formation inhibitor
2079	 34.25	0	2135400..2137685	-	761	167040754	-	Teth514_2131	-	penicillin-binding protein, transpeptidase
2080	 27.94	-1	2137697..2138215	-	172	167040755	-	Teth514_2132	-	hypothetical protein
2081	 33.57	0	2138222..2139055	-	277	167040756	-	Teth514_2133	-	rod shape-determining protein MreC
2082	 40.00	+1	2139070..2140089	-	339	167040757	-	Teth514_2134	-	cell shape determining protein MreB
2083	 35.58	0	2140111..2140821	-	236	167040758	-	Teth514_2135	-	DNA repair protein RadC
2084	 31.94	0	2140826..2141401	-	191	167040759	-	Teth514_2136	-	maf protein
2085	 32.13	0	2141410..2141658	-	82	167040760	-	Teth514_2137	-	hypothetical protein
2086	 37.17	0	2141808..2143553	-	581	167040761	-	Teth514_2138	-	hydrogenase, Fe-only
2087	 38.58	+1	2143574..2145364	-	596	167040762	-	Teth514_2139	-	NADH dehydrogenase (quinone)
2088	 36.34	0	2145380..2145745	-	121	167040763	-	Teth514_2140	-	hypothetical protein
2089	 32.78	0	2145748..2146293	-	181	167040764	-	Teth514_2141	-	histidine kinase
2090	 34.58	0	2146307..2146789	-	160	167040765	-	Teth514_2142	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
2091	 31.36	0	2146958..2147665	-	235	167040766	-	Teth514_2143	-	phosphotransferase domain-containing protein
2092	 38.69	+1	2147662..2147997	-	111	167040767	-	Teth514_2144	-	hypothetical protein
2093	 35.24	0	2148004..2149311	-	435	167040768	-	Teth514_2145	-	Fe-S cluster domain-containing protein
2094	 35.00	0	2149320..2149739	-	139	167040769	-	Teth514_2146	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
2095	 37.01	0	2149741..2150094	-	117	167040770	-	Teth514_2147	-	hypothetical protein
2096	 27.40	-1	2150109..2150900	-	263	167040771	-	Teth514_2148	-	hypothetical protein
2097	 30.56	0	2151039..2151614	+	191	167040772	-	Teth514_2149	-	lytic transglycosylase, catalytic
2098	 35.80	0	2151637..2153457	-	606	167040773	-	Teth514_2150	-	GTP-binding protein TypA
2099	 37.96	0	2153575..2154849	-	424	167040774	-	Teth514_2151	-	NLP/P60 protein
2100	 29.29	-1	2155188..2156771	-	527	167040775	-	Teth514_2152	-	extracellular solute-binding protein
2101	 37.00	0	2156791..2157825	-	344	167040776	-	Teth514_2153	-	nicotinate phosphoribosyltransferase
2102	 30.03	-1	2157909..2158514	-	201	167040777	-	Teth514_2154	-	lytic transglycosylase, catalytic
2103	 31.49	0	2158493..2159089	-	198	167040778	-	Teth514_2155	-	dephospho-CoA kinase
2104	 30.55	0	2159100..2161718	-	872	167040779	-	Teth514_2156	-	DNA polymerase I
2105	 34.29	0	2162002..2162418	-	138	167040780	-	Teth514_2157	-	phage shock protein C, PspC
2106	 27.30	-1	2162449..2162730	-	93	167040781	-	Teth514_2158	-	hypothetical protein
2107	 36.15	0	2162837..2163760	+	307	167040782	-	Teth514_2159	-	glycoside hydrolase family protein
2108	 36.05	0	2164084..2164524	+	146	167040783	-	Teth514_2160	-	hypothetical protein
2109	 44.16	+2	2164544..2165134	-	196	167040784	-	Teth514_2161	-	hypothetical protein
2110	 32.32	0	2165213..2165410	-	65	167040785	-	Teth514_2162	-	hypothetical protein
2111	 30.89	0	2165403..2165771	-	122	167040786	-	Teth514_2163	-	prevent-host-death family protein
2112	 29.84	-1	2165977..2166405	-	142	167040787	-	Teth514_2164	-	hypothetical protein
2113	 27.19	-1	2166359..2166814	-	151	167040788	-	Teth514_2165	-	DNA polymerase beta subunit
2114	 35.56	0	2166876..2167010	-	44	167040789	-	Teth514_2166	-	hypothetical protein
2115	 32.79	0	2166997..2167179	-	60	167040790	-	Teth514_2167	-	ABC-type multidrug transport system ATPase component-like protein
2116	 36.02	0	2167312..2168463	+	383	167040791	-	Teth514_2168	-	hypothetical protein
2117	 29.77	-1	2168485..2168961	-	158	167040792	-	Teth514_2169	-	hypothetical protein
2118	 36.48	0	2168972..2170498	-	508	167040793	-	Teth514_2170	-	histidine ammonia-lyase
2119	 35.82	0	2170692..2170892	-	66	167040794	-	Teth514_2171	-	hypothetical protein
2120	 33.73	0	2170914..2171165	-	83	167040795	-	Teth514_2172	-	hypothetical protein
2121	 34.99	0	2171579..2172484	+	301	167040796	-	Teth514_2173	-	peptidase M23B
2122	 32.33	0	2172486..2172884	+	132	167040797	-	Teth514_2174	-	hypothetical protein
2123	 30.47	0	2173194..2174627	-	477	167040798	-	Teth514_2175	-	GntR family transcriptional regulator
2124	 35.88	0	2174761..2175936	+	391	167040799	-	Teth514_2176	-	isoaspartyl dipeptidase
2125	 34.03	0	2175957..2176529	-	190	167040800	-	Teth514_2177	-	response regulator receiver/ANTAR domain-containing protein
2126	 36.93	0	2176549..2177883	-	444	167040801	-	Teth514_2178	-	glutamine synthetase, type I
2127	 35.46	0	2178045..2178326	-	93	167040802	-	Teth514_2179	-	hypothetical protein
2128	 32.36	0	2178427..2180175	+	582	167040803	-	Teth514_2180	-	ABC transporter related
2129	 31.89	0	2180188..2181990	+	600	167040804	-	Teth514_2181	-	ABC transporter related
2130	 28.12	-1	2182039..2182863	+	274	167040805	-	Teth514_2182	-	hypothetical protein
2131	 37.17	0	2183017..2184006	+	329	167040806	-	Teth514_2183	-	aspartate-semialdehyde dehydrogenase
2132	 38.48	+1	2184020..2184913	+	297	167040807	-	Teth514_2184	-	dihydrodipicolinate synthase
2133	 35.98	0	2184913..2185668	+	251	167040808	-	Teth514_2185	-	dihydrodipicolinate reductase
2134	 38.57	+1	2185665..2186390	+	241	167040809	-	Teth514_2186	-	tetrahydrodipicolinate succinyltransferase domain-containing protein
2135	 36.17	0	2186417..2186944	-	175	167040810	-	Teth514_2187	-	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
2136	 34.88	0	2186981..2187628	-	215	167040811	-	Teth514_2188	-	single-strand DNA-binding protein
2137	 29.28	-1	2187741..2188283	-	180	167040812	-	Teth514_2189	-	Mur ligase middle domain-containing protein
2138	 35.63	0	2188382..2189077	-	231	167040813	-	Teth514_2190	-	cell wall hydrolase, SleB
2139	 31.89	0	2189191..2190504	-	437	167040814	-	Teth514_2191	-	sigma-54 factor interaction domain-containing protein
2140	 38.99	+1	2191002..2192732	+	576	167040815	-	Teth514_2192	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2141	 33.93	0	2192773..2195115	-	780	167040816	-	Teth514_2193	-	Kojibiose phosphorylase
2142	 37.83	0	2195193..2196437	-	414	167040817	-	Teth514_2194	-	extracellular solute-binding protein
2143	 35.38	0	2196508..2197338	-	276	167040818	-	Teth514_2195	-	binding-protein-dependent transport systems inner membrane component
2144	 35.43	0	2197338..2198195	-	285	167040819	-	Teth514_2196	-	binding-protein-dependent transport systems inner membrane component
2145	 34.22	0	2198288..2199301	-	337	167040820	-	Teth514_2197	-	periplasmic binding protein/LacI transcriptional regulator
2146	 33.33	0	2199423..2200070	-	215	167040821	-	Teth514_2198	-	beta-phosphoglucomutase
2147	 34.20	0	2200092..2200901	-	269	167040822	-	Teth514_2199	-	monosaccharide-transporting ATPase
2148	 33.33	0	2200915..2201814	-	299	167040823	-	Teth514_2200	-	binding-protein-dependent transport systems inner membrane component
2149	 37.13	0	2201890..2203152	-	420	167040824	-	Teth514_2201	-	extracellular solute-binding protein
2150	 35.05	0	2203296..2205623	-	775	167040825	-	Teth514_2202	-	Kojibiose phosphorylase
2151	 35.11	0	2205689..2206699	-	336	167040826	-	Teth514_2203	-	periplasmic binding protein/LacI transcriptional regulator
2152	 38.75	+1	2206748..2207449	-	233	167040827	-	Teth514_2204	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2153	 43.67	+2	2207587..2207886	+	99	167040828	-	Teth514_2205	-	small acid-soluble spore protein, alpha/beta type
2154	 27.71	-1	2208279..2208794	+	171	167040829	-	Teth514_2206	-	hypothetical protein
2155	 30.39	-1	2208781..2209698	-	305	167040830	-	Teth514_2207	-	hypothetical protein
2156	 33.76	0	2210414..2210647	-	77	167040831	-	Teth514_2208	-	hypothetical protein
2157	 34.26	0	2210690..2211979	-	429	167040832	-	Teth514_2209	-	FolC bifunctional protein
2158	 35.38	0	2212008..2212544	-	178	167040833	-	Teth514_2210	-	GCN5-related N-acetyltransferase
2159	 37.12	0	2212562..2215201	-	879	167040834	-	Teth514_2211	-	valyl-tRNA synthetase
2160	 35.22	0	2215582..2216004	+	140	167040835	-	Teth514_2212	-	hypothetical protein
2161	 34.43	0	2216140..2216688	+	182	167040836	-	Teth514_2213	-	BioY protein
2162	 38.15	0	2216705..2217265	-	186	167040837	-	Teth514_2214	-	hypothetical protein
2163	 32.90	0	2217466..2218395	-	309	167040838	-	Teth514_2215	-	hypothetical protein
2164	 31.70	0	2218519..2219193	+	224	167040839	-	Teth514_2216	-	two component transcriptional regulator
2165	 31.25	0	2219196..2220536	+	446	167040840	-	Teth514_2217	-	integral membrane sensor signal transduction histidine kinase
2166	 36.88	0	2221719..2222480	-	253	167040841	-	Teth514_2219	-	NCAIR mutase (PurE)-related protein-like protein
2167	 34.73	0	2222470..2223330	-	286	167040842	-	Teth514_2220	-	ExsB family protein
2168	 30.43	-1	2223434..2223949	-	171	167040843	-	Teth514_2221	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2169	 29.49	-1	2224015..2224509	-	164	167040844	-	Teth514_2222	-	hypothetical protein
2170	 37.08	0	2225667..2227079	-	470	167040845	-	Teth514_2224	-	RNA-directed DNA polymerase (Reverse transcriptase)
2171	 34.86	0	2227528..2227986	-	152	167040846	-	Teth514_2225	-	hypothetical protein
2172	 36.34	0	2229121..2230518	+	465	167040847	-	Teth514_2227	-	EmrB/QacA family drug resistance transporter
2173	 39.22	+1	2230524..2230931	+	135	167040848	-	Teth514_2228	-	nucleoside-diphosphate kinase
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.