IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2038	 29.12	-1	2101608..2101892	+	94	167040713	-	Teth514_2090	-	30S ribosomal protein S20
2039	 30.19	-1	2101919..2102935	-	338	167040714	-	Teth514_2091	-	DNA polymerase III, delta subunit
2040	 32.45	0	2102940..2105213	-	757	167040715	-	Teth514_2092	-	DNA internalization-related competence protein ComEC/Rec2
2041	 33.20	0	2105215..2105937	-	240	167040716	-	Teth514_2093	-	beta-lactamase domain-containing protein
2042	 29.34	-1	2105934..2106785	-	283	167040717	-	Teth514_2094	-	hydrolase
2043	 33.53	0	2107028..2107528	-	166	167040718	-	Teth514_2095	-	hypothetical protein
2044	 31.18	0	2107654..2107839	-	61	167040719	-	Teth514_2096	-	hypothetical protein
2045	 29.68	-1	2107912..2108130	-	72	167040720	-	Teth514_2097	-	hypothetical protein
2046	 30.56	0	2108395..2108538	-	47	167040721	-	Teth514_2098	-	hypothetical protein
2047	 35.50	0	2108684..2109559	-	291	167040722	-	Teth514_2099	-	branched-chain amino acid aminotransferase
2048	 43.86	+2	2109677..2109847	-	56	167040723	-	Teth514_2100	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2049	 29.63	-1	2110209..2110370	-	53	167040724	-	Teth514_2101	-	hypothetical protein
2050	 34.86	0	2110499..2111938	-	479	167040725	-	Teth514_2102	-	glutamyl-tRNA synthetase
2051	 30.80	0	2112068..2112541	+	157	167040726	-	Teth514_2103	-	phosphatidylglycerophosphatase A
2052	 31.19	0	2112595..2113200	-	201	167040727	-	Teth514_2104	-	helix-hairpin-helix repeat-containing competence protein ComEA
2053	 33.81	0	2113315..2114580	+	421	167040728	-	Teth514_2105	-	Serine-type D-Ala-D-Ala carboxypeptidase
2054	 32.74	0	2114609..2116120	-	503	167040729	-	Teth514_2106	-	asparagine synthetase B
2055	 37.75	0	2116202..2117854	-	550	167040730	-	Teth514_2107	-	hypothetical protein
2056	 35.69	0	2117851..2118951	-	366	167040731	-	Teth514_2108	-	NAD/NADP octopine/nopaline dehydrogenase
2057	 35.79	0	2119247..2119897	-	216	167040732	-	Teth514_2109	-	YheO domain-containing protein
2058	 31.92	0	2120035..2120388	-	117	167040733	-	Teth514_2110	-	iojap-like protein
2059	 31.94	0	2120454..2121026	-	190	167040734	-	Teth514_2111	-	metal dependent phosphohydrolase
2060	 36.16	0	2121016..2121651	-	211	167040735	-	Teth514_2112	-	nicotinic acid mononucleotide adenylyltransferase
2061	 35.85	0	2121780..2123051	-	423	167040736	-	Teth514_2113	-	GTPase ObgE
2062	 32.41	0	2123100..2123315	-	71	167040737	-	Teth514_2114	-	hypothetical protein
2063	 36.46	0	2123376..2123663	-	95	167040738	-	Teth514_2115	-	50S ribosomal protein L27
2064	 34.51	0	2123660..2123998	-	112	167040739	-	Teth514_2116	-	hypothetical protein
2065	 33.02	0	2124002..2124316	-	104	167040740	-	Teth514_2117	-	50S ribosomal protein L21
2066	 32.80	0	2124504..2124875	-	123	167040741	-	Teth514_2118	-	hypothetical protein
2067	 35.40	0	2125392..2125874	+	160	167040742	-	Teth514_2119	-	hypothetical protein
2068	 30.85	0	2125864..2126265	+	133	167040743	-	Teth514_2120	-	7-cyano-7-deazaguanine reductase
2069	 33.33	0	2126318..2127742	-	474	167040744	-	Teth514_2121	-	ribonuclease
2070	 29.66	-1	2127759..2128412	-	217	167040745	-	Teth514_2122	-	hypothetical protein
2071	 33.71	0	2128393..2130246	-	617	167040746	-	Teth514_2123	-	radical SAM domain-containing protein
2072	 31.35	0	2130263..2131117	-	284	167040747	-	Teth514_2124	-	peptidase M50
2073	 34.27	0	2131114..2131863	-	249	167040748	-	Teth514_2125	-	peptidase M23B
2074	 38.10	0	2131926..2132324	-	132	167040749	-	Teth514_2126	-	methylglyoxal synthase
2075	 35.88	0	2132336..2133433	-	365	167040750	-	Teth514_2127	-	rod shape-determining protein RodA
2076	 30.07	-1	2133520..2133795	-	91	167040751	-	Teth514_2128	-	cell division topological specificity factor MinE
2077	 34.46	0	2133817..2134614	-	265	167040752	-	Teth514_2129	-	septum site-determining protein MinD
2078	 34.26	0	2134652..2135296	-	214	167040753	-	Teth514_2130	-	septum formation inhibitor
2079	 34.25	0	2135400..2137685	-	761	167040754	-	Teth514_2131	-	penicillin-binding protein, transpeptidase
2080	 27.94	-1	2137697..2138215	-	172	167040755	-	Teth514_2132	-	hypothetical protein
2081	 33.57	0	2138222..2139055	-	277	167040756	-	Teth514_2133	-	rod shape-determining protein MreC
2082	 40.00	+1	2139070..2140089	-	339	167040757	-	Teth514_2134	-	cell shape determining protein MreB
2083	 35.58	0	2140111..2140821	-	236	167040758	-	Teth514_2135	-	DNA repair protein RadC
2084	 31.94	0	2140826..2141401	-	191	167040759	-	Teth514_2136	-	maf protein
2085	 32.13	0	2141410..2141658	-	82	167040760	-	Teth514_2137	-	hypothetical protein
2086	 37.17	0	2141808..2143553	-	581	167040761	-	Teth514_2138	-	hydrogenase, Fe-only
2087	 38.58	+1	2143574..2145364	-	596	167040762	-	Teth514_2139	-	NADH dehydrogenase (quinone)
2088	 36.34	0	2145380..2145745	-	121	167040763	-	Teth514_2140	-	hypothetical protein
2089	 32.78	0	2145748..2146293	-	181	167040764	-	Teth514_2141	-	histidine kinase
2090	 34.58	0	2146307..2146789	-	160	167040765	-	Teth514_2142	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
2091	 31.36	0	2146958..2147665	-	235	167040766	-	Teth514_2143	-	phosphotransferase domain-containing protein
2092	 38.69	+1	2147662..2147997	-	111	167040767	-	Teth514_2144	-	hypothetical protein
2093	 35.24	0	2148004..2149311	-	435	167040768	-	Teth514_2145	-	Fe-S cluster domain-containing protein
2094	 35.00	0	2149320..2149739	-	139	167040769	-	Teth514_2146	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
2095	 37.01	0	2149741..2150094	-	117	167040770	-	Teth514_2147	-	hypothetical protein
2096	 27.40	-1	2150109..2150900	-	263	167040771	-	Teth514_2148	-	hypothetical protein
2097	 30.56	0	2151039..2151614	+	191	167040772	-	Teth514_2149	-	lytic transglycosylase, catalytic
2098	 35.80	0	2151637..2153457	-	606	167040773	-	Teth514_2150	-	GTP-binding protein TypA
2099	 37.96	0	2153575..2154849	-	424	167040774	-	Teth514_2151	-	NLP/P60 protein
2100	 29.29	-1	2155188..2156771	-	527	167040775	-	Teth514_2152	-	extracellular solute-binding protein
2101	 37.00	0	2156791..2157825	-	344	167040776	-	Teth514_2153	-	nicotinate phosphoribosyltransferase
2102	 30.03	-1	2157909..2158514	-	201	167040777	-	Teth514_2154	-	lytic transglycosylase, catalytic
2103	 31.49	0	2158493..2159089	-	198	167040778	-	Teth514_2155	-	dephospho-CoA kinase
2104	 30.55	0	2159100..2161718	-	872	167040779	-	Teth514_2156	-	DNA polymerase I
2105	 34.29	0	2162002..2162418	-	138	167040780	-	Teth514_2157	-	phage shock protein C, PspC
2106	 27.30	-1	2162449..2162730	-	93	167040781	-	Teth514_2158	-	hypothetical protein
2107	 36.15	0	2162837..2163760	+	307	167040782	-	Teth514_2159	-	glycoside hydrolase family protein
2108	 36.05	0	2164084..2164524	+	146	167040783	-	Teth514_2160	-	hypothetical protein
2109	 44.16	+2	2164544..2165134	-	196	167040784	-	Teth514_2161	-	hypothetical protein
2110	 32.32	0	2165213..2165410	-	65	167040785	-	Teth514_2162	-	hypothetical protein
2111	 30.89	0	2165403..2165771	-	122	167040786	-	Teth514_2163	-	prevent-host-death family protein
2112	 29.84	-1	2165977..2166405	-	142	167040787	-	Teth514_2164	-	hypothetical protein
2113	 27.19	-1	2166359..2166814	-	151	167040788	-	Teth514_2165	-	DNA polymerase beta subunit
2114	 35.56	0	2166876..2167010	-	44	167040789	-	Teth514_2166	-	hypothetical protein
2115	 32.79	0	2166997..2167179	-	60	167040790	-	Teth514_2167	-	ABC-type multidrug transport system ATPase component-like protein
2116	 36.02	0	2167312..2168463	+	383	167040791	-	Teth514_2168	-	hypothetical protein
2117	 29.77	-1	2168485..2168961	-	158	167040792	-	Teth514_2169	-	hypothetical protein
2118	 36.48	0	2168972..2170498	-	508	167040793	-	Teth514_2170	-	histidine ammonia-lyase
2119	 35.82	0	2170692..2170892	-	66	167040794	-	Teth514_2171	-	hypothetical protein
2120	 33.73	0	2170914..2171165	-	83	167040795	-	Teth514_2172	-	hypothetical protein
2121	 34.99	0	2171579..2172484	+	301	167040796	-	Teth514_2173	-	peptidase M23B
2122	 32.33	0	2172486..2172884	+	132	167040797	-	Teth514_2174	-	hypothetical protein
2123	 30.47	0	2173194..2174627	-	477	167040798	-	Teth514_2175	-	GntR family transcriptional regulator
2124	 35.88	0	2174761..2175936	+	391	167040799	-	Teth514_2176	-	isoaspartyl dipeptidase
2125	 34.03	0	2175957..2176529	-	190	167040800	-	Teth514_2177	-	response regulator receiver/ANTAR domain-containing protein
2126	 36.93	0	2176549..2177883	-	444	167040801	-	Teth514_2178	-	glutamine synthetase, type I
2127	 35.46	0	2178045..2178326	-	93	167040802	-	Teth514_2179	-	hypothetical protein
2128	 32.36	0	2178427..2180175	+	582	167040803	-	Teth514_2180	-	ABC transporter related
2129	 31.89	0	2180188..2181990	+	600	167040804	-	Teth514_2181	-	ABC transporter related
2130	 28.12	-1	2182039..2182863	+	274	167040805	-	Teth514_2182	-	hypothetical protein
2131	 37.17	0	2183017..2184006	+	329	167040806	-	Teth514_2183	-	aspartate-semialdehyde dehydrogenase
2132	 38.48	+1	2184020..2184913	+	297	167040807	-	Teth514_2184	-	dihydrodipicolinate synthase
2133	 35.98	0	2184913..2185668	+	251	167040808	-	Teth514_2185	-	dihydrodipicolinate reductase
2134	 38.57	+1	2185665..2186390	+	241	167040809	-	Teth514_2186	-	tetrahydrodipicolinate succinyltransferase domain-containing protein
2135	 36.17	0	2186417..2186944	-	175	167040810	-	Teth514_2187	-	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
2136	 34.88	0	2186981..2187628	-	215	167040811	-	Teth514_2188	-	single-strand DNA-binding protein
2137	 29.28	-1	2187741..2188283	-	180	167040812	-	Teth514_2189	-	Mur ligase middle domain-containing protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.