IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1947	 27.64	-1	2008639..2008884	-	81	167040622	-	Teth514_1999	-	PRC-barrel domain-containing protein
1948	 35.41	0	2008953..2009723	-	256	167040623	-	Teth514_2000	-	sporulation sigma factor SigG
1949	 28.37	-1	2009793..2010518	-	241	167040624	-	Teth514_2001	-	sporulation sigma factor SigE
1950	 26.59	-1	2010533..2011363	-	276	167040625	-	Teth514_2002	-	peptidase U4, sporulation factor SpoIIGA
1951	 37.24	0	2011538..2012611	-	357	167040626	-	Teth514_2003	-	cell division protein FtsZ
1952	 34.72	0	2012626..2013852	-	408	167040627	-	Teth514_2004	-	cell division protein FtsA
1953	 33.62	0	2013878..2014222	-	114	167040628	-	Teth514_2005	-	hypothetical protein
1954	 35.55	0	2014222..2014944	-	240	167040629	-	Teth514_2006	-	hypothetical protein
1955	 25.35	-2	2014960..2015673	-	237	167040630	-	Teth514_2007	-	polypeptide-transport-associated domain-containing protein
1956	 36.52	0	2015731..2016984	-	417	167040631	-	Teth514_2008	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1957	 30.96	0	2017058..2018152	-	364	167040632	-	Teth514_2009	-	N-acetylglucosaminyl transferase
1958	 35.05	0	2018159..2019265	-	368	167040633	-	Teth514_2010	-	stage V sporulation protein E
1959	 32.60	0	2019270..2020634	-	454	167040634	-	Teth514_2011	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1960	 33.02	0	2020647..2021597	-	316	167040635	-	Teth514_2012	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1961	 30.73	0	2021599..2022981	-	460	167040636	-	Teth514_2013	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
1962	 35.19	0	2022981..2024432	-	483	167040637	-	Teth514_2014	-	UDP-N-acetylmuramyl-tripeptide synthetase
1963	 36.05	0	2024516..2026465	-	649	167040638	-	Teth514_2015	-	peptidoglycan glycosyltransferase
1964	 30.63	0	2026604..2027047	-	147	167040639	-	Teth514_2016	-	cell division protein FtsL
1965	 34.30	0	2027076..2028002	-	308	167040640	-	Teth514_2017	-	S-adenosyl-methyltransferase MraW
1966	 35.19	0	2028015..2028446	-	143	167040641	-	Teth514_2018	-	cell division protein MraZ
1967	 30.59	0	2028587..2029864	-	425	167040642	-	Teth514_2019	-	peptidase M16 domain-containing protein
1968	 31.67	0	2029867..2031132	-	421	167040643	-	Teth514_2020	-	peptidase M16 domain-containing protein
1969	 35.90	0	2031236..2031742	-	168	167040644	-	Teth514_2021	-	hypothetical protein
1970	 35.07	0	2031885..2032976	+	363	167040645	-	Teth514_2022	-	translation-associated GTPase
1971	 33.33	0	2033005..2033301	-	98	167040646	-	Teth514_2023	-	hypothetical protein
1972	 33.25	0	2033480..2034622	-	380	167040647	-	Teth514_2024	-	thiamine biosynthesis/tRNA modification protein ThiI
1973	 33.68	0	2034626..2035777	-	383	167040648	-	Teth514_2025	-	aminotransferase, class V
1974	 31.09	0	2035860..2036126	-	88	167040649	-	Teth514_2026	-	hypothetical protein
1975	 37.08	0	2036293..2037705	-	470	167040650	-	Teth514_2027	-	RNA-directed DNA polymerase (Reverse transcriptase)
1976	 38.99	+1	2038154..2038825	-	223	167040651	-	Teth514_2028	-	hypothetical protein
1977	 38.14	0	2038985..2039296	-	103	167040652	-	Teth514_2029	-	hypothetical protein
1978	 33.42	0	2039473..2040621	-	382	167040653	-	Teth514_2030	-	dehydrogenase catalytic domain-containing protein
1979	 34.73	0	2040626..2041624	-	332	167040654	-	Teth514_2031	-	ATP-NAD/AcoX kinase
1980	 40.71	+1	2041665..2042627	-	320	167040655	-	Teth514_2032	-	transketolase, central region
1981	 40.22	+1	2042633..2043619	-	328	167040656	-	Teth514_2033	-	pyruvate dehydrogenase (acetyl-transferring)
1982	 39.62	+1	2043637..2044002	-	121	167040657	-	Teth514_2034	-	hypothetical protein
1983	 33.59	0	2044147..2046114	-	655	167040658	-	Teth514_2035	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1984	 36.87	0	2046173..2047021	-	282	167040659	-	Teth514_2036	-	lipoyl synthase
1985	 36.68	0	2047008..2047694	-	228	167040660	-	Teth514_2037	-	lipoate-protein ligase B
1986	 36.66	0	2047713..2049065	-	450	167040661	-	Teth514_2038	-	dihydrolipoamide dehydrogenase
1987	 28.50	-1	2049219..2050604	+	461	167040662	-	Teth514_2039	-	hypothetical protein
1988	 33.72	0	2050601..2050858	-	85	167040663	-	Teth514_2040	-	hypothetical protein
1989	 37.68	0	2051118..2052521	-	467	167040664	-	Teth514_2041	-	putative aminopeptidase 1
1990	 31.42	0	2052620..2053246	-	208	167040665	-	Teth514_2042	-	two component LuxR family transcriptional regulator
1991	 32.65	0	2053224..2054390	-	388	167040666	-	Teth514_2043	-	histidine kinase
1992	 31.03	0	2054651..2055346	-	231	167040667	-	Teth514_2044	-	hypothetical protein
1993	 34.48	0	2055391..2055825	-	144	167040668	-	Teth514_2045	-	hypothetical protein
1994	 33.29	0	2055837..2058212	-	791	167040669	-	Teth514_2046	-	recombination and DNA strand exchange inhibitor protein
1995	 32.31	0	2058212..2060563	-	783	167040670	-	Teth514_2047	-	peptidase U32
1996	 29.07	-1	2060574..2060948	-	124	167040671	-	Teth514_2048	-	hypothetical protein
1997	 35.72	0	2061054..2063438	-	794	167040672	-	Teth514_2049	-	phenylalanyl-tRNA synthetase subunit beta
1998	 35.69	0	2063451..2064470	-	339	167040673	-	Teth514_2050	-	phenylalanyl-tRNA synthetase subunit alpha
1999	 32.81	0	2064763..2065527	-	254	167040674	-	Teth514_2051	-	tRNA/rRNA methyltransferase (SpoU)
2000	 33.89	0	2065580..2065939	-	119	167040675	-	Teth514_2052	-	50S ribosomal protein L20
2001	 31.31	0	2065960..2066157	-	65	167040676	-	Teth514_2053	-	ribosomal protein L35
2002	 36.38	0	2066185..2066643	-	152	167040677	-	Teth514_2054	-	translation initiation factor IF-3
2003	 37.13	0	2066997..2068049	-	350	167040678	-	Teth514_2055	-	chorismate synthase
2004	 31.80	0	2068061..2069302	-	413	167040679	-	Teth514_2056	-	major facilitator transporter
2005	 35.33	0	2069405..2071309	-	634	167040680	-	Teth514_2057	-	threonyl-tRNA synthetase
2006	 29.67	-1	2071607..2072206	-	199	167040681	-	Teth514_2058	-	hypothetical protein
2007	 27.19	-1	2072291..2073169	-	292	167040682	-	Teth514_2059	-	hypothetical protein
2008	 31.84	0	2073225..2073959	-	244	167040683	-	Teth514_2060	-	hypothetical protein
2009	 31.66	0	2074018..2074974	-	318	167040684	-	Teth514_2061	-	response regulator receiver modulated diguanylate cyclase
2010	 30.65	0	2075073..2075408	-	111	167040685	-	Teth514_2062	-	thioredoxin domain-containing protein
2011	 36.38	0	2076040..2076924	-	294	167040686	-	Teth514_2063	-	Hsp33 protein
2012	 39.71	+1	2076985..2077188	-	67	167040687	-	Teth514_2064	-	cold-shock DNA-binding domain-containing protein
2013	 35.61	0	2077264..2078010	-	248	167040688	-	Teth514_2065	-	silent information regulator protein Sir2
2014	 35.67	0	2078036..2078206	-	56	167040689	-	Teth514_2066	-	hypothetical protein
2015	 42.79	+2	2078796..2079017	-	73	167040690	-	Teth514_2067	-	NifU domain-containing protein
2016	 33.55	0	2079071..2079535	-	154	167040691	-	Teth514_2068	-	putative GAF sensor protein
2017	 32.95	0	2079752..2080525	-	257	167040692	-	Teth514_2069	-	prolipoprotein diacylglyceryl transferase
2018	 36.13	0	2081098..2082492	-	464	167040693	-	Teth514_2070	-	dipeptidase PepV
2019	 30.56	0	2082833..2083156	+	107	167040694	-	Teth514_2071	-	regulatory protein, ArsR
2020	 38.17	0	2083208..2084386	+	392	167040695	-	Teth514_2072	-	permease
2021	 31.25	0	2084459..2084698	+	79	167040696	-	Teth514_2073	-	redox-active disulfide protein 2
2022	 39.69	+1	2084872..2086239	-	455	167040697	-	Teth514_2074	-	hypothetical protein
2023	 30.14	-1	2086249..2086593	-	114	167040698	-	Teth514_2075	-	ACT domain-containing protein
2024	 30.76	0	2086647..2087384	-	245	167040699	-	Teth514_2076	-	hypothetical protein
2025	 33.98	0	2087391..2088317	-	308	167040700	-	Teth514_2077	-	ribosomal protein L11 methyltransferase
2026	 39.88	+1	2088345..2089505	-	386	167040701	-	Teth514_2078	-	chaperone protein DnaJ
2027	 38.06	0	2089561..2091399	-	612	167040702	-	Teth514_2079	-	molecular chaperone DnaK
2028	 33.50	0	2091417..2092004	-	195	167040703	-	Teth514_2080	-	GrpE protein
2029	 30.91	0	2092018..2093049	-	343	167040704	-	Teth514_2081	-	heat-inducible transcription repressor HrcA
2030	 30.94	0	2093144..2094271	-	375	167040705	-	Teth514_2082	-	coproporphyrinogen III oxidase
2031	 35.76	0	2094268..2096079	-	603	167040706	-	Teth514_2083	-	GTP-binding protein LepA
2032	 32.96	0	2096113..2096382	-	89	167040707	-	Teth514_2084	-	hypothetical protein
2033	 24.86	-2	2096386..2096562	-	58	167040708	-	Teth514_2085	-	hypothetical protein
2034	 32.60	0	2096646..2098820	-	724	167040709	-	Teth514_2086	-	hypothetical protein
2035	 32.24	0	2098917..2100107	-	396	167040710	-	Teth514_2087	-	stage II sporulation P family protein
2036	 36.65	0	2100177..2101142	-	321	167040711	-	Teth514_2088	-	germination protease
2037	 38.84	+1	2101148..2101474	-	108	167040712	-	Teth514_2089	-	hypothetical protein
2038	 29.12	-1	2101608..2101892	+	94	167040713	-	Teth514_2090	-	30S ribosomal protein S20
2039	 30.19	-1	2101919..2102935	-	338	167040714	-	Teth514_2091	-	DNA polymerase III, delta subunit
2040	 32.45	0	2102940..2105213	-	757	167040715	-	Teth514_2092	-	DNA internalization-related competence protein ComEC/Rec2
2041	 33.20	0	2105215..2105937	-	240	167040716	-	Teth514_2093	-	beta-lactamase domain-containing protein
2042	 29.34	-1	2105934..2106785	-	283	167040717	-	Teth514_2094	-	hydrolase
2043	 33.53	0	2107028..2107528	-	166	167040718	-	Teth514_2095	-	hypothetical protein
2044	 31.18	0	2107654..2107839	-	61	167040719	-	Teth514_2096	-	hypothetical protein
2045	 29.68	-1	2107912..2108130	-	72	167040720	-	Teth514_2097	-	hypothetical protein
2046	 30.56	0	2108395..2108538	-	47	167040721	-	Teth514_2098	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.