IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1868	 40.10	+1	1926166..1926564	-	132	167040543	-	Teth514_1913	-	hypothetical protein
1869	 38.21	0	1926740..1928194	-	484	167040544	-	Teth514_1914	-	aldehyde dehydrogenase
1870	 41.54	+1	1928195..1928584	-	129	167040545	-	Teth514_1915	-	cupin 2 domain-containing protein
1871	 34.97	0	1928756..1929730	-	324	167040546	-	Teth514_1916	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1872	 33.00	0	1929727..1930626	-	299	167040547	-	Teth514_1917	-	dihydrodipicolinate synthetase
1873	 34.84	0	1930899..1931825	-	308	167040548	-	Teth514_1918	-	ketose-bisphosphate aldolase
1874	 35.02	0	1931839..1932846	-	335	167040549	-	Teth514_1919	-	phosphotransferase domain-containing protein
1875	 30.77	0	1933326..1933598	-	90	167040550	-	Teth514_1921	-	hypothetical protein
1876	 37.45	0	1933617..1934078	-	153	167040551	-	Teth514_1922	-	RpiB/LacA/LacB family sugar-phosphate isomerase
1877	 35.86	0	1934089..1935036	-	315	167040552	-	Teth514_1923	-	transketolase domain-containing protein
1878	 34.40	0	1935029..1935874	-	281	167040553	-	Teth514_1924	-	transketolase domain-containing protein
1879	 33.50	0	1935906..1937108	-	400	167040554	-	Teth514_1925	-	transaldolase
1880	 30.73	0	1937315..1939042	-	575	167040555	-	Teth514_1926	-	sigma-54 dependent trancsriptional regulator
1881	 28.40	-1	1939644..1939886	-	80	167040556	-	Teth514_1927	-	hypothetical protein
1882	 41.41	+1	1939995..1940093	-	32	167040557	-	Teth514_1928	-	hypothetical protein
1883	 36.34	0	1940252..1940983	-	243	167040558	-	Teth514_1929	-	hypothetical protein
1884	 36.83	0	1940987..1941472	-	161	167040559	-	Teth514_1930	-	hypothetical protein
1885	 36.09	0	1941544..1942485	-	313	167040560	-	Teth514_1931	-	cobalamin biosynthesis protein CobD
1886	 33.71	0	1942576..1943376	-	266	167040561	-	Teth514_1932	-	ABC transporter related
1887	 36.66	0	1943381..1944373	-	330	167040562	-	Teth514_1933	-	transport system permease protein
1888	 36.60	0	1944375..1945322	-	315	167040563	-	Teth514_1934	-	periplasmic binding protein
1889	 34.87	0	1945757..1946926	-	389	167040564	-	Teth514_1935	-	iron-containing alcohol dehydrogenase
1890	 34.40	0	1947207..1948421	-	404	167040565	-	Teth514_1936	-	acetate kinase
1891	 32.22	0	1948437..1948886	-	149	167040566	-	Teth514_1937	-	ethanolamine utilization protein-like protein
1892	 35.99	0	1948899..1949237	-	112	167040567	-	Teth514_1938	-	microcompartments protein
1893	 34.97	0	1949245..1949793	-	182	167040568	-	Teth514_1939	-	microcompartments protein
1894	 39.43	+1	1949852..1950655	-	267	167040569	-	Teth514_1940	-	MIP family channel protein
1895	 33.62	0	1950816..1952234	+	472	167040570	-	Teth514_1941	-	hypothetical protein
1896	 38.04	0	1952557..1953957	-	466	167040571	-	Teth514_1942	-	aldehyde dehydrogenase
1897	 36.13	0	1953972..1954973	-	333	167040572	-	Teth514_1943	-	ATP--cobalamin adenosyltransferase
1898	 35.64	0	1954970..1955272	-	100	167040573	-	Teth514_1944	-	ethanolamine utilization protein EutN/carboxysome structural protein Ccml
1899	 31.25	0	1955311..1956126	-	271	167040574	-	Teth514_1945	-	hypothetical protein
1900	 38.23	0	1956133..1956969	-	278	167040575	-	Teth514_1946	-	ethanolamine utilization protein EutJ family protein
1901	 36.97	0	1957005..1957664	-	219	167040576	-	Teth514_1947	-	propanediol utilization protein
1902	 39.51	+1	1957669..1958235	-	188	167040577	-	Teth514_1948	-	microcompartments protein
1903	 34.97	0	1958258..1958623	-	121	167040578	-	Teth514_1949	-	hypothetical protein
1904	 38.68	+1	1958620..1960434	-	604	167040579	-	Teth514_1950	-	hypothetical protein
1905	 38.67	+1	1960455..1960979	-	174	167040580	-	Teth514_1951	-	dehydratase, small subunit
1906	 38.41	+1	1960969..1961658	-	229	167040581	-	Teth514_1952	-	dehydratase, medium subunit
1907	 41.02	+1	1961692..1963356	-	554	167040582	-	Teth514_1953	-	glycerol dehydratase
1908	 41.10	+1	1963420..1964217	-	265	167040583	-	Teth514_1954	-	microcompartments protein
1909	 43.62	+2	1964254..1964535	-	93	167040584	-	Teth514_1955	-	microcompartments protein
1910	 33.01	0	1965032..1965655	-	207	167040585	-	Teth514_1956	-	hypothetical protein
1911	 31.03	0	1966054..1967097	-	347	167040586	-	Teth514_1957	-	integrase catalytic subunit
1912	 29.76	-1	1967413..1969005	-	530	167040587	-	Teth514_1958	-	response regulator receiver protein
1913	 33.90	0	1968980..1970224	-	414	167040588	-	Teth514_1959	-	histidine kinase
1914	 44.96	+2	1970745..1971002	-	85	167040589	-	Teth514_1960	-	hypothetical protein
1915	 38.75	+1	1972654..1974204	-	516	167040590	-	Teth514_1963	-	hydantoinase/oxoprolinase
1916	 40.31	+1	1974221..1975324	-	367	167040591	-	Teth514_1964	-	hypothetical protein
1917	 36.36	0	1975408..1976727	-	439	167040592	-	Teth514_1965	-	permease for cytosine/purines, uracil, thiamine, allantoin
1918	 36.12	0	1977170..1978750	+	526	167040593	-	Teth514_1966	-	sigma-54 factor interaction domain-containing protein
1919	 38.65	+1	1978759..1979868	+	369	167040594	-	Teth514_1967	-	hypothetical protein
1920	 33.50	0	1979865..1981076	+	403	167040595	-	Teth514_1968	-	hypothetical protein
1921	 36.02	0	1981716..1983164	-	482	167040596	-	Teth514_1970	-	EmrB/QacA family drug resistance transporter
1922	 33.33	0	1983280..1983786	-	168	167040597	-	Teth514_1971	-	ABC transporter related
1923	 36.05	0	1983813..1984253	-	146	167040598	-	Teth514_1972	-	MarR family transcriptional regulator
1924	 26.07	-2	1984468..1985817	+	449	167040599	-	Teth514_1973	-	SecC motif-containing protein
1925	 33.33	0	1986109..1987998	-	629	167040600	-	Teth514_1974	-	amino acid transporter-like protein
1926	 29.46	-1	1988592..1989236	-	214	167040601	-	Teth514_1976	-	phospholipid/glycerol acyltransferase
1927	 34.71	0	1989499..1990299	-	266	167040602	-	Teth514_1977	-	response regulator receiver protein
1928	 35.09	0	1991683..1993161	-	492	167040603	-	Teth514_1980	-	hypothetical protein
1929	 36.86	0	1993283..1994275	-	330	167040604	-	Teth514_1981	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
1930	 36.68	0	1994291..1994887	-	198	167040605	-	Teth514_1982	-	hypothetical protein
1931	 34.02	0	1994907..1996226	-	439	167040606	-	Teth514_1983	-	GTP-binding protein EngA
1932	 32.04	0	1996231..1997547	-	438	167040607	-	Teth514_1984	-	hypothetical protein
1933	 33.33	0	1997606..1998070	-	154	167040608	-	Teth514_1985	-	hypothetical protein
1934	 23.84	-2	1998083..1998514	-	143	167040609	-	Teth514_1986	-	hypothetical protein
1935	 32.35	0	1998524..1998727	-	67	167040610	-	Teth514_1987	-	hypothetical protein
1936	 34.33	0	1998737..1999642	-	301	167040611	-	Teth514_1988	-	hypothetical protein
1937	 36.47	0	1999639..2000784	-	381	167040612	-	Teth514_1989	-	stage II sporulation P family protein
1938	 36.60	0	2000762..2001466	-	234	167040613	-	Teth514_1990	-	hypothetical protein
1939	 33.33	0	2001568..2002221	-	217	167040614	-	Teth514_1991	-	phosphate uptake regulator, PhoU
1940	 34.93	0	2002236..2002985	-	249	167040615	-	Teth514_1992	-	phosphate ABC transporter, ATPase subunit
1941	 36.04	0	2003027..2003914	-	295	167040616	-	Teth514_1993	-	phosphate ABC transporter, inner membrane subunit PstA
1942	 35.78	0	2003911..2004810	-	299	167040617	-	Teth514_1994	-	phosphate ABC transporter, inner membrane subunit PstC
1943	 37.51	0	2005007..2005891	-	294	167040618	-	Teth514_1995	-	phosphate binding protein
1944	 27.94	-1	2005973..2007343	-	456	167040619	-	Teth514_1996	-	multi-sensor signal transduction histidine kinase
1945	 32.62	0	2007343..2008047	-	234	167040620	-	Teth514_1997	-	two component transcriptional regulator
1946	 32.08	0	2008095..2008571	-	158	167040621	-	Teth514_1998	-	transcriptional regulator NrdR
1947	 27.64	-1	2008639..2008884	-	81	167040622	-	Teth514_1999	-	PRC-barrel domain-containing protein
1948	 35.41	0	2008953..2009723	-	256	167040623	-	Teth514_2000	-	sporulation sigma factor SigG
1949	 28.37	-1	2009793..2010518	-	241	167040624	-	Teth514_2001	-	sporulation sigma factor SigE
1950	 26.59	-1	2010533..2011363	-	276	167040625	-	Teth514_2002	-	peptidase U4, sporulation factor SpoIIGA
1951	 37.24	0	2011538..2012611	-	357	167040626	-	Teth514_2003	-	cell division protein FtsZ
1952	 34.72	0	2012626..2013852	-	408	167040627	-	Teth514_2004	-	cell division protein FtsA
1953	 33.62	0	2013878..2014222	-	114	167040628	-	Teth514_2005	-	hypothetical protein
1954	 35.55	0	2014222..2014944	-	240	167040629	-	Teth514_2006	-	hypothetical protein
1955	 25.35	-2	2014960..2015673	-	237	167040630	-	Teth514_2007	-	polypeptide-transport-associated domain-containing protein
1956	 36.52	0	2015731..2016984	-	417	167040631	-	Teth514_2008	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1957	 30.96	0	2017058..2018152	-	364	167040632	-	Teth514_2009	-	N-acetylglucosaminyl transferase
1958	 35.05	0	2018159..2019265	-	368	167040633	-	Teth514_2010	-	stage V sporulation protein E
1959	 32.60	0	2019270..2020634	-	454	167040634	-	Teth514_2011	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1960	 33.02	0	2020647..2021597	-	316	167040635	-	Teth514_2012	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1961	 30.73	0	2021599..2022981	-	460	167040636	-	Teth514_2013	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
1962	 35.19	0	2022981..2024432	-	483	167040637	-	Teth514_2014	-	UDP-N-acetylmuramyl-tripeptide synthetase
1963	 36.05	0	2024516..2026465	-	649	167040638	-	Teth514_2015	-	peptidoglycan glycosyltransferase
1964	 30.63	0	2026604..2027047	-	147	167040639	-	Teth514_2016	-	cell division protein FtsL
1965	 34.30	0	2027076..2028002	-	308	167040640	-	Teth514_2017	-	S-adenosyl-methyltransferase MraW
1966	 35.19	0	2028015..2028446	-	143	167040641	-	Teth514_2018	-	cell division protein MraZ
1967	 30.59	0	2028587..2029864	-	425	167040642	-	Teth514_2019	-	peptidase M16 domain-containing protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.