IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1836	 33.22	0	1893936..1895660	-	574	167040511	-	Teth514_1880	-	ABC transporter related
1837	 33.72	0	1895671..1896708	-	345	167040512	-	Teth514_1881	-	aIF-2BI family translation initiation factor
1838	 33.96	0	1896730..1897686	-	318	167040513	-	Teth514_1882	-	alcohol dehydrogenase
1839	 29.15	-1	1897711..1898451	-	246	167040514	-	Teth514_1883	-	GntR family transcriptional regulator
1840	 34.58	0	1898468..1899109	-	213	167040515	-	Teth514_1884	-	L-fuculose phosphate aldolase
1841	 35.42	0	1899345..1900640	-	431	167040516	-	Teth514_1885	-	amidohydrolase
1842	 37.30	0	1900688..1903486	-	932	167040517	-	Teth514_1886	-	isoleucyl-tRNA synthetase
1843	 39.43	+1	1903818..1904063	-	81	167040518	-	Teth514_1887	-	hypothetical protein
1844	 30.66	0	1904053..1904538	-	161	167040519	-	Teth514_1888	-	DivIVA family protein
1845	 33.33	0	1904566..1905312	-	248	167040520	-	Teth514_1889	-	RNA-binding S4 domain-containing protein
1846	 30.36	-1	1905309..1905611	-	100	167040521	-	Teth514_1890	-	protein of unknown function YGGT
1847	 31.16	0	1905628..1906041	-	137	167040522	-	Teth514_1891	-	hypothetical protein
1848	 32.68	0	1906045..1906653	-	202	167040523	-	Teth514_1892	-	alanine racemase domain-containing protein
1849	 28.28	-1	1906756..1907943	-	395	167040524	-	Teth514_1893	-	hypothetical protein
1850	 38.89	+1	1908239..1908616	-	125	167040525	-	Teth514_1894	-	putative endoribonuclease L-PSP
1851	 34.60	0	1908867..1910210	-	447	167040526	-	Teth514_1895	-	gluconate transporter
1852	 35.58	0	1910232..1911386	-	384	167040527	-	Teth514_1896	-	glycerate kinase
1853	 27.40	-1	1911502..1912647	-	381	167040528	-	Teth514_1897	-	transcriptional regulator, CdaR
1854	 35.00	0	1912688..1914307	-	539	167040529	-	Teth514_1898	-	putative CoA-substrate-specific enzyme activase
1855	 32.93	0	1914330..1915580	-	416	167040530	-	Teth514_1899	-	2-hydroxyglutaryl-CoA dehydratase, D-component
1856	 41.48	+1	1915655..1915789	-	44	167040531	-	Teth514_1900	-	hypothetical protein
1857	 25.16	-2	1916066..1916224	+	52	167040532	-	Teth514_1901	-	hypothetical protein
1858	 27.24	-1	1916314..1916592	+	92	167040533	-	Teth514_1902	-	transposase
1859	 38.74	+1	1916686..1917906	-	406	167040534	-	Teth514_1903	-	transposase IS116/IS110/IS902 family protein
1860	 35.26	0	1918519..1918830	-	103	167040535	-	Teth514_1904	-	hypothetical protein
1861	 38.19	0	1919240..1920001	-	253	167040536	-	Teth514_1905	-	hypothetical protein
1862	 34.08	0	1920102..1920902	+	266	167040537	-	Teth514_1906	-	hypothetical protein
1863	 34.57	0	1921574..1922221	-	215	167040538	-	Teth514_1907	-	dihydroxyacetone kinase, L subunit
1864	 37.85	0	1922666..1923661	-	331	167040539	-	Teth514_1909	-	Glycerone kinase
1865	 30.81	0	1923697..1924092	-	131	167040540	-	Teth514_1910	-	dihydroxyacetone kinase, phosphotransfer subunit
1866	 36.86	0	1924243..1925772	-	509	167040541	-	Teth514_1911	-	xylulokinase
1867	 40.46	+1	1925815..1926165	-	116	167040542	-	Teth514_1912	-	hypothetical protein
1868	 40.10	+1	1926166..1926564	-	132	167040543	-	Teth514_1913	-	hypothetical protein
1869	 38.21	0	1926740..1928194	-	484	167040544	-	Teth514_1914	-	aldehyde dehydrogenase
1870	 41.54	+1	1928195..1928584	-	129	167040545	-	Teth514_1915	-	cupin 2 domain-containing protein
1871	 34.97	0	1928756..1929730	-	324	167040546	-	Teth514_1916	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1872	 33.00	0	1929727..1930626	-	299	167040547	-	Teth514_1917	-	dihydrodipicolinate synthetase
1873	 34.84	0	1930899..1931825	-	308	167040548	-	Teth514_1918	-	ketose-bisphosphate aldolase
1874	 35.02	0	1931839..1932846	-	335	167040549	-	Teth514_1919	-	phosphotransferase domain-containing protein
1875	 30.77	0	1933326..1933598	-	90	167040550	-	Teth514_1921	-	hypothetical protein
1876	 37.45	0	1933617..1934078	-	153	167040551	-	Teth514_1922	-	RpiB/LacA/LacB family sugar-phosphate isomerase
1877	 35.86	0	1934089..1935036	-	315	167040552	-	Teth514_1923	-	transketolase domain-containing protein
1878	 34.40	0	1935029..1935874	-	281	167040553	-	Teth514_1924	-	transketolase domain-containing protein
1879	 33.50	0	1935906..1937108	-	400	167040554	-	Teth514_1925	-	transaldolase
1880	 30.73	0	1937315..1939042	-	575	167040555	-	Teth514_1926	-	sigma-54 dependent trancsriptional regulator
1881	 28.40	-1	1939644..1939886	-	80	167040556	-	Teth514_1927	-	hypothetical protein
1882	 41.41	+1	1939995..1940093	-	32	167040557	-	Teth514_1928	-	hypothetical protein
1883	 36.34	0	1940252..1940983	-	243	167040558	-	Teth514_1929	-	hypothetical protein
1884	 36.83	0	1940987..1941472	-	161	167040559	-	Teth514_1930	-	hypothetical protein
1885	 36.09	0	1941544..1942485	-	313	167040560	-	Teth514_1931	-	cobalamin biosynthesis protein CobD
1886	 33.71	0	1942576..1943376	-	266	167040561	-	Teth514_1932	-	ABC transporter related
1887	 36.66	0	1943381..1944373	-	330	167040562	-	Teth514_1933	-	transport system permease protein
1888	 36.60	0	1944375..1945322	-	315	167040563	-	Teth514_1934	-	periplasmic binding protein
1889	 34.87	0	1945757..1946926	-	389	167040564	-	Teth514_1935	-	iron-containing alcohol dehydrogenase
1890	 34.40	0	1947207..1948421	-	404	167040565	-	Teth514_1936	-	acetate kinase
1891	 32.22	0	1948437..1948886	-	149	167040566	-	Teth514_1937	-	ethanolamine utilization protein-like protein
1892	 35.99	0	1948899..1949237	-	112	167040567	-	Teth514_1938	-	microcompartments protein
1893	 34.97	0	1949245..1949793	-	182	167040568	-	Teth514_1939	-	microcompartments protein
1894	 39.43	+1	1949852..1950655	-	267	167040569	-	Teth514_1940	-	MIP family channel protein
1895	 33.62	0	1950816..1952234	+	472	167040570	-	Teth514_1941	-	hypothetical protein
1896	 38.04	0	1952557..1953957	-	466	167040571	-	Teth514_1942	-	aldehyde dehydrogenase
1897	 36.13	0	1953972..1954973	-	333	167040572	-	Teth514_1943	-	ATP--cobalamin adenosyltransferase
1898	 35.64	0	1954970..1955272	-	100	167040573	-	Teth514_1944	-	ethanolamine utilization protein EutN/carboxysome structural protein Ccml
1899	 31.25	0	1955311..1956126	-	271	167040574	-	Teth514_1945	-	hypothetical protein
1900	 38.23	0	1956133..1956969	-	278	167040575	-	Teth514_1946	-	ethanolamine utilization protein EutJ family protein
1901	 36.97	0	1957005..1957664	-	219	167040576	-	Teth514_1947	-	propanediol utilization protein
1902	 39.51	+1	1957669..1958235	-	188	167040577	-	Teth514_1948	-	microcompartments protein
1903	 34.97	0	1958258..1958623	-	121	167040578	-	Teth514_1949	-	hypothetical protein
1904	 38.68	+1	1958620..1960434	-	604	167040579	-	Teth514_1950	-	hypothetical protein
1905	 38.67	+1	1960455..1960979	-	174	167040580	-	Teth514_1951	-	dehydratase, small subunit
1906	 38.41	+1	1960969..1961658	-	229	167040581	-	Teth514_1952	-	dehydratase, medium subunit
1907	 41.02	+1	1961692..1963356	-	554	167040582	-	Teth514_1953	-	glycerol dehydratase
1908	 41.10	+1	1963420..1964217	-	265	167040583	-	Teth514_1954	-	microcompartments protein
1909	 43.62	+2	1964254..1964535	-	93	167040584	-	Teth514_1955	-	microcompartments protein
1910	 33.01	0	1965032..1965655	-	207	167040585	-	Teth514_1956	-	hypothetical protein
1911	 31.03	0	1966054..1967097	-	347	167040586	-	Teth514_1957	-	integrase catalytic subunit
1912	 29.76	-1	1967413..1969005	-	530	167040587	-	Teth514_1958	-	response regulator receiver protein
1913	 33.90	0	1968980..1970224	-	414	167040588	-	Teth514_1959	-	histidine kinase
1914	 44.96	+2	1970745..1971002	-	85	167040589	-	Teth514_1960	-	hypothetical protein
1915	 38.75	+1	1972654..1974204	-	516	167040590	-	Teth514_1963	-	hydantoinase/oxoprolinase
1916	 40.31	+1	1974221..1975324	-	367	167040591	-	Teth514_1964	-	hypothetical protein
1917	 36.36	0	1975408..1976727	-	439	167040592	-	Teth514_1965	-	permease for cytosine/purines, uracil, thiamine, allantoin
1918	 36.12	0	1977170..1978750	+	526	167040593	-	Teth514_1966	-	sigma-54 factor interaction domain-containing protein
1919	 38.65	+1	1978759..1979868	+	369	167040594	-	Teth514_1967	-	hypothetical protein
1920	 33.50	0	1979865..1981076	+	403	167040595	-	Teth514_1968	-	hypothetical protein
1921	 36.02	0	1981716..1983164	-	482	167040596	-	Teth514_1970	-	EmrB/QacA family drug resistance transporter
1922	 33.33	0	1983280..1983786	-	168	167040597	-	Teth514_1971	-	ABC transporter related
1923	 36.05	0	1983813..1984253	-	146	167040598	-	Teth514_1972	-	MarR family transcriptional regulator
1924	 26.07	-2	1984468..1985817	+	449	167040599	-	Teth514_1973	-	SecC motif-containing protein
1925	 33.33	0	1986109..1987998	-	629	167040600	-	Teth514_1974	-	amino acid transporter-like protein
1926	 29.46	-1	1988592..1989236	-	214	167040601	-	Teth514_1976	-	phospholipid/glycerol acyltransferase
1927	 34.71	0	1989499..1990299	-	266	167040602	-	Teth514_1977	-	response regulator receiver protein
1928	 35.09	0	1991683..1993161	-	492	167040603	-	Teth514_1980	-	hypothetical protein
1929	 36.86	0	1993283..1994275	-	330	167040604	-	Teth514_1981	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
1930	 36.68	0	1994291..1994887	-	198	167040605	-	Teth514_1982	-	hypothetical protein
1931	 34.02	0	1994907..1996226	-	439	167040606	-	Teth514_1983	-	GTP-binding protein EngA
1932	 32.04	0	1996231..1997547	-	438	167040607	-	Teth514_1984	-	hypothetical protein
1933	 33.33	0	1997606..1998070	-	154	167040608	-	Teth514_1985	-	hypothetical protein
1934	 23.84	-2	1998083..1998514	-	143	167040609	-	Teth514_1986	-	hypothetical protein
1935	 32.35	0	1998524..1998727	-	67	167040610	-	Teth514_1987	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.