IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1769	 32.05	0	1822341..1823588	+	415	167040444	-	Teth514_1811	-	protein of unknown function Met10
1770	 41.88	+1	1823655..1823888	+	77	167040445	-	Teth514_1812	-	peptidoglycan binding domain-containing protein
1771	 34.55	0	1823885..1824457	-	190	167040446	-	Teth514_1813	-	orotate phosphoribosyltransferase
1772	 35.86	0	1824471..1825379	-	302	167040447	-	Teth514_1814	-	dihydroorotate dehydrogenase 1B
1773	 37.04	0	1825376..1826104	-	242	167040448	-	Teth514_1815	-	oxidoreductase FAD/NAD(P)-binding subunit
1774	 35.17	0	1826113..1827036	-	307	167040449	-	Teth514_1816	-	orotidine 5'-phosphate decarboxylase
1775	 38.19	0	1827095..1828390	-	431	167040450	-	Teth514_1817	-	dihydroorotase
1776	 39.56	+1	1828392..1829306	-	304	167040451	-	Teth514_1818	-	aspartate carbamoyltransferase catalytic subunit
1777	 38.73	+1	1829512..1830048	-	178	167040452	-	Teth514_1819	-	pyrimidine regulatory protein PyrR
1778	 36.35	0	1830265..1831260	+	331	167040453	-	Teth514_1820	-	AIR synthase-like protein
1779	 36.17	0	1831550..1832467	-	305	167040454	-	Teth514_1821	-	RluA family pseudouridine synthase
1780	 32.41	0	1832472..1832906	-	144	167040455	-	Teth514_1822	-	lipoprotein signal peptidase
1781	 30.82	0	1833175..1833732	-	185	167040456	-	Teth514_1823	-	GCN5-related N-acetyltransferase
1782	 32.00	0	1833777..1834451	-	224	167040457	-	Teth514_1824	-	hypothetical protein
1783	 28.24	-1	1834503..1836977	-	824	167040458	-	Teth514_1825	-	hypothetical protein
1784	 29.51	-1	1836952..1838703	-	583	167040459	-	Teth514_1826	-	ATPase
1785	 31.72	0	1838828..1841926	-	1032	167040460	-	Teth514_1827	-	type III restriction enzyme, res subunit
1786	 34.39	0	1841939..1843837	-	632	167040461	-	Teth514_1828	-	site-specific DNA-methyltransferase (adenine-specific)
1787	 26.45	-2	1843851..1844576	-	241	167040462	-	Teth514_1829	-	hypothetical protein
1788	 29.92	-1	1844577..1847738	-	1053	167040463	-	Teth514_1830	-	helicase domain-containing protein
1789	 29.29	-1	1849052..1851052	-	666	167040464	-	Teth514_1832	-	hypothetical protein
1790	 26.63	-1	1851071..1851652	-	193	167040465	-	Teth514_1833	-	hypothetical protein
1791	 28.54	-1	1851642..1853060	-	472	167040466	-	Teth514_1834	-	hypothetical protein
1792	 27.42	-1	1853053..1855269	-	738	167040467	-	Teth514_1835	-	hypothetical protein
1793	 27.96	-1	1855266..1856810	-	514	167040468	-	Teth514_1836	-	hypothetical protein
1794	 25.70	-2	1856807..1858156	-	449	167040469	-	Teth514_1837	-	hypothetical protein
1795	 27.21	-1	1858210..1859499	-	429	167040470	-	Teth514_1838	-	CRISPR-associated TM1812 family protein
1796	 28.79	-1	1859502..1859963	-	153	167040471	-	Teth514_1839	-	hypothetical protein
1797	 25.21	-2	1860264..1860497	+	77	167040472	-	Teth514_1840	-	hypothetical protein
1798	 31.75	0	1860515..1860703	+	62	167040473	-	Teth514_1841	-	hypothetical protein
1799	 29.92	-1	1861324..1861704	-	126	167040474	-	Teth514_1843	-	large conductance mechanosensitive channel protein
1800	 30.66	0	1861746..1863542	-	598	167040475	-	Teth514_1844	-	membrane protein-like protein
1801	 33.20	0	1863559..1864314	-	251	167040476	-	Teth514_1845	-	hypothetical protein
1802	 35.59	0	1864314..1864934	-	206	167040477	-	Teth514_1846	-	nitroreductase
1803	 32.69	0	1865196..1865660	+	154	167040478	-	Teth514_1847	-	ECF subfamily RNA polymerase sigma-24 factor
1804	 33.65	0	1865661..1866620	+	319	167040479	-	Teth514_1848	-	hypothetical protein
1805	 37.84	0	1866724..1866945	-	73	167040480	-	Teth514_1849	-	hypothetical protein
1806	 49.01	+2	1867131..1868246	-	371	167040481	-	Teth514_1850	-	sodium ion-translocating decarboxylase, beta subunit
1807	 41.94	+1	1868293..1868652	-	119	167040482	-	Teth514_1851	-	sodium pump decarboxylase, gamma subunit
1808	 47.76	+2	1868689..1869090	-	133	167040483	-	Teth514_1852	-	glyoxalase/bleomycin resistance protein/dioxygenase
1809	 49.35	+2	1869104..1870033	-	309	167040484	-	Teth514_1853	-	LAO/AO transport system ATPase
1810	 46.62	+2	1870037..1870450	-	137	167040485	-	Teth514_1854	-	cobalamin B12-binding domain-containing protein
1811	 47.71	+2	1870465..1872147	-	560	167040486	-	Teth514_1855	-	methylmalonyl-CoA mutase, large subunit
1812	 29.85	-1	1872706..1873797	-	363	167040487	-	Teth514_1856	-	transglutaminase domain-containing protein
1813	 32.85	0	1874463..1874879	+	138	167040488	-	Teth514_1857	-	hypothetical protein
1814	 32.05	0	1874902..1875522	-	206	167040489	-	Teth514_1858	-	TraR/DksA family transcriptional regulator
1815	 33.01	0	1875538..1875849	-	103	167040490	-	Teth514_1859	-	hypothetical protein
1816	 35.96	0	1876070..1877251	+	393	167040491	-	Teth514_1860	-	cystathionine gamma-synthase
1817	 28.65	-1	1877285..1877818	-	177	167040492	-	Teth514_1861	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1818	 36.14	0	1877827..1878609	-	260	167040493	-	Teth514_1862	-	3-deoxy-7-phosphoheptulonate synthase
1819	 34.22	0	1878621..1879409	-	262	167040494	-	Teth514_1863	-	tryptophan synthase subunit alpha
1820	 39.46	+1	1879406..1880581	-	391	167040495	-	Teth514_1864	-	tryptophan synthase subunit beta
1821	 32.35	0	1880578..1881189	-	203	167040496	-	Teth514_1865	-	phosphoribosylanthranilate isomerase
1822	 32.69	0	1881191..1881973	-	260	167040497	-	Teth514_1866	-	indole-3-glycerol-phosphate synthase
1823	 37.27	0	1881973..1882989	-	338	167040498	-	Teth514_1867	-	anthranilate phosphoribosyltransferase
1824	 32.48	0	1882970..1883557	-	195	167040499	-	Teth514_1868	-	glutamine amidotransferase of anthranilate synthase
1825	 34.59	0	1883557..1884984	-	475	167040500	-	Teth514_1869	-	anthranilate synthase component I
1826	 31.30	0	1885423..1886601	-	392	167040501	-	Teth514_1870	-	poly-gamma-glutamate biosynthesis protein
1827	 31.97	0	1886634..1886927	-	97	167040502	-	Teth514_1871	-	hypothetical protein
1828	 37.95	0	1886948..1887142	-	64	167040503	-	Teth514_1872	-	cystathionine beta-lyase/cystathionine gamma-synthase-like protein
1829	 32.99	0	1887302..1887883	+	193	167040504	-	Teth514_1873	-	hypothetical protein
1830	 34.77	0	1888020..1889345	+	441	167040505	-	Teth514_1874	-	integrase catalytic subunit
1831	 34.08	0	1889363..1890163	+	266	167040506	-	Teth514_1875	-	AAA ATPase
1832	 31.19	0	1890333..1891358	-	341	167040507	-	Teth514_1876	-	cystathionine gamma-synthase
1833	 36.08	0	1891448..1892248	-	266	167040508	-	Teth514_1877	-	hypothetical protein
1834	 34.24	0	1892384..1893154	-	256	167040509	-	Teth514_1878	-	purine phosphorylase family 2
1835	 30.17	-1	1893169..1893927	-	252	167040510	-	Teth514_1879	-	cobalt transport protein
1836	 33.22	0	1893936..1895660	-	574	167040511	-	Teth514_1880	-	ABC transporter related
1837	 33.72	0	1895671..1896708	-	345	167040512	-	Teth514_1881	-	aIF-2BI family translation initiation factor
1838	 33.96	0	1896730..1897686	-	318	167040513	-	Teth514_1882	-	alcohol dehydrogenase
1839	 29.15	-1	1897711..1898451	-	246	167040514	-	Teth514_1883	-	GntR family transcriptional regulator
1840	 34.58	0	1898468..1899109	-	213	167040515	-	Teth514_1884	-	L-fuculose phosphate aldolase
1841	 35.42	0	1899345..1900640	-	431	167040516	-	Teth514_1885	-	amidohydrolase
1842	 37.30	0	1900688..1903486	-	932	167040517	-	Teth514_1886	-	isoleucyl-tRNA synthetase
1843	 39.43	+1	1903818..1904063	-	81	167040518	-	Teth514_1887	-	hypothetical protein
1844	 30.66	0	1904053..1904538	-	161	167040519	-	Teth514_1888	-	DivIVA family protein
1845	 33.33	0	1904566..1905312	-	248	167040520	-	Teth514_1889	-	RNA-binding S4 domain-containing protein
1846	 30.36	-1	1905309..1905611	-	100	167040521	-	Teth514_1890	-	protein of unknown function YGGT
1847	 31.16	0	1905628..1906041	-	137	167040522	-	Teth514_1891	-	hypothetical protein
1848	 32.68	0	1906045..1906653	-	202	167040523	-	Teth514_1892	-	alanine racemase domain-containing protein
1849	 28.28	-1	1906756..1907943	-	395	167040524	-	Teth514_1893	-	hypothetical protein
1850	 38.89	+1	1908239..1908616	-	125	167040525	-	Teth514_1894	-	putative endoribonuclease L-PSP
1851	 34.60	0	1908867..1910210	-	447	167040526	-	Teth514_1895	-	gluconate transporter
1852	 35.58	0	1910232..1911386	-	384	167040527	-	Teth514_1896	-	glycerate kinase
1853	 27.40	-1	1911502..1912647	-	381	167040528	-	Teth514_1897	-	transcriptional regulator, CdaR
1854	 35.00	0	1912688..1914307	-	539	167040529	-	Teth514_1898	-	putative CoA-substrate-specific enzyme activase
1855	 32.93	0	1914330..1915580	-	416	167040530	-	Teth514_1899	-	2-hydroxyglutaryl-CoA dehydratase, D-component
1856	 41.48	+1	1915655..1915789	-	44	167040531	-	Teth514_1900	-	hypothetical protein
1857	 25.16	-2	1916066..1916224	+	52	167040532	-	Teth514_1901	-	hypothetical protein
1858	 27.24	-1	1916314..1916592	+	92	167040533	-	Teth514_1902	-	transposase
1859	 38.74	+1	1916686..1917906	-	406	167040534	-	Teth514_1903	-	transposase IS116/IS110/IS902 family protein
1860	 35.26	0	1918519..1918830	-	103	167040535	-	Teth514_1904	-	hypothetical protein
1861	 38.19	0	1919240..1920001	-	253	167040536	-	Teth514_1905	-	hypothetical protein
1862	 34.08	0	1920102..1920902	+	266	167040537	-	Teth514_1906	-	hypothetical protein
1863	 34.57	0	1921574..1922221	-	215	167040538	-	Teth514_1907	-	dihydroxyacetone kinase, L subunit
1864	 37.85	0	1922666..1923661	-	331	167040539	-	Teth514_1909	-	Glycerone kinase
1865	 30.81	0	1923697..1924092	-	131	167040540	-	Teth514_1910	-	dihydroxyacetone kinase, phosphotransfer subunit
1866	 36.86	0	1924243..1925772	-	509	167040541	-	Teth514_1911	-	xylulokinase
1867	 40.46	+1	1925815..1926165	-	116	167040542	-	Teth514_1912	-	hypothetical protein
1868	 40.10	+1	1926166..1926564	-	132	167040543	-	Teth514_1913	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.