IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1693	 34.33	0	1737034..1738239	-	401	167040368	-	Teth514_1731	-	acetate kinase
1694	 37.54	0	1738259..1739257	-	332	167040369	-	Teth514_1732	-	phosphotransacetylase
1695	 30.18	-1	1739390..1740595	+	401	167040370	-	Teth514_1733	-	hypothetical protein
1696	 32.74	0	1740671..1741852	+	393	167040371	-	Teth514_1734	-	nucleoside recognition domain-containing protein
1697	 31.40	0	1741853..1742317	-	154	167040372	-	Teth514_1735	-	hypothetical protein
1698	 32.50	0	1742336..1742815	-	159	167040373	-	Teth514_1736	-	pantetheine-phosphate adenylyltransferase
1699	 30.48	0	1742812..1743372	-	186	167040374	-	Teth514_1737	-	putative methyltransferase
1700	 41.23	+1	1743590..1743817	-	75	167040375	-	Teth514_1738	-	small acid-soluble spore protein, alpha/beta type
1701	 43.42	+2	1743961..1744188	-	75	167040376	-	Teth514_1739	-	small acid-soluble spore protein, alpha/beta type
1702	 33.69	0	1744304..1745146	-	280	167040377	-	Teth514_1740	-	degV family protein
1703	 32.75	0	1745164..1747209	-	681	167040378	-	Teth514_1741	-	ATP-dependent DNA helicase RecG
1704	 31.59	0	1747222..1748823	-	533	167040379	-	Teth514_1742	-	Dak phosphatase
1705	 33.33	0	1748813..1749163	-	116	167040380	-	Teth514_1743	-	hypothetical protein
1706	 35.98	0	1749395..1749583	+	62	167040381	-	Teth514_1744	-	ribosomal protein L28
1707	 28.96	-1	1749620..1749802	-	60	167040382	-	Teth514_1745	-	hypothetical protein
1708	 30.66	0	1749862..1750497	-	211	167040383	-	Teth514_1746	-	thiamine pyrophosphokinase
1709	 32.57	0	1750494..1751144	-	216	167040384	-	Teth514_1747	-	ribulose-phosphate 3-epimerase
1710	 34.13	0	1751148..1752029	-	293	167040385	-	Teth514_1748	-	ribosome small subunit-dependent GTPase A
1711	 36.00	0	1752030..1753907	-	625	167040386	-	Teth514_1749	-	protein kinase
1712	 32.80	0	1753904..1754647	-	247	167040387	-	Teth514_1750	-	protein phosphatase 2C domain-containing protein
1713	 33.14	0	1754655..1755683	-	342	167040388	-	Teth514_1751	-	radical SAM protein
1714	 29.59	-1	1755781..1757115	-	444	167040389	-	Teth514_1752	-	sun protein
1715	 38.74	+1	1757134..1757817	-	227	167040390	-	Teth514_1753	-	peptidase, membrane zinc metallopeptidase, putative
1716	 32.01	0	1757823..1758575	-	250	167040391	-	Teth514_1754	-	hypothetical protein
1717	 36.66	0	1758596..1759528	-	310	167040392	-	Teth514_1755	-	methionyl-tRNA formyltransferase
1718	 36.67	0	1760009..1761268	+	419	167040393	-	Teth514_1756	-	transposase IS116/IS110/IS902 family protein
1719	 35.73	0	1761381..1761881	-	166	167040394	-	Teth514_1757	-	peptide deformylase
1720	 33.88	0	1761901..1764099	-	732	167040395	-	Teth514_1758	-	primosomal protein N'
1721	 34.42	0	1764150..1765349	-	399	167040396	-	Teth514_1759	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1722	 29.58	-1	1765361..1765573	-	70	167040397	-	Teth514_1760	-	DNA-directed RNA polymerase subunit omega
1723	 33.33	0	1765570..1766193	-	207	167040398	-	Teth514_1761	-	guanylate kinase
1724	 34.36	0	1766203..1766493	-	96	167040399	-	Teth514_1762	-	hypothetical protein
1725	 29.67	-1	1766506..1767378	-	290	167040400	-	Teth514_1763	-	hypothetical protein
1726	 35.68	0	1767424..1768233	-	269	167040401	-	Teth514_1764	-	diaminopimelate epimerase
1727	 35.46	0	1768340..1769470	-	376	167040402	-	Teth514_1765	-	major facilitator transporter
1728	 31.63	0	1769486..1770013	-	175	167040403	-	Teth514_1766	-	hypothetical protein
1729	 30.12	-1	1770211..1771923	+	570	167040404	-	Teth514_1767	-	fibronectin-binding A domain-containing protein
1730	 27.87	-1	1771948..1772496	-	182	167040405	-	Teth514_1768	-	2'-5' RNA ligase
1731	 38.16	0	1772942..1773976	+	344	167040406	-	Teth514_1769	-	ABC transporter related
1732	 42.81	+2	1773969..1774622	+	217	167040407	-	Teth514_1770	-	binding-protein-dependent transport systems inner membrane component
1733	 40.86	+1	1774655..1775491	+	278	167040408	-	Teth514_1771	-	YaeC family lipoprotein
1734	 39.76	+1	1775508..1776161	+	217	167040409	-	Teth514_1772	-	Asp/Glu racemase
1735	 34.96	0	1778133..1778501	-	122	167040410	-	Teth514_1773	-	hypothetical protein
1736	 32.43	0	1781587..1782468	-	293	167040411	-	Teth514_1774	-	cation diffusion facilitator family transporter
1737	 28.74	-1	1782654..1782827	+	57	167040412	-	Teth514_1775	-	hypothetical protein
1738	 36.54	0	1783356..1783916	-	186	167040413	-	Teth514_1777	-	phage SPO1 DNA polymerase-related protein
1739	 36.90	0	1783923..1784483	-	186	167040414	-	Teth514_1778	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
1740	 39.15	+1	1784503..1785345	-	280	167040415	-	Teth514_1779	-	fumarate hydratase
1741	 42.06	+1	1785491..1786384	+	297	167040416	-	Teth514_1780	-	PP-loop domain-containing protein
1742	 36.80	0	1786425..1791968	-	1847	167040417	-	Teth514_1781	-	alpha amylase, catalytic region
1743	 34.26	0	1792223..1792438	-	71	167040418	-	Teth514_1782	-	hypothetical protein
1744	 37.63	0	1792496..1793263	-	255	167040419	-	Teth514_1783	-	3-ketoacyl-(acyl-carrier-protein) reductase
1745	 33.95	0	1793510..1794487	-	325	167040420	-	Teth514_1784	-	D-alanine--D-alanine ligase
1746	 32.00	0	1794541..1795590	-	349	167040421	-	Teth514_1785	-	hypothetical protein
1747	 32.57	0	1795611..1796786	-	391	167040422	-	Teth514_1786	-	glycosyl transferase, group 1
1748	 34.19	0	1796816..1797862	-	348	167040423	-	Teth514_1787	-	nucleotidyl transferase
1749	 36.92	0	1798080..1798970	-	296	167040424	-	Teth514_1788	-	glycosidase, PH1107-related
1750	 35.31	0	1798985..1799893	-	302	167040425	-	Teth514_1789	-	glycosidase, PH1107-related
1751	 34.71	0	1799896..1801779	-	627	167040426	-	Teth514_1790	-	glycoside hydrolase family protein
1752	 23.89	-2	1801798..1801977	-	59	167040427	-	Teth514_1791	-	hypothetical protein
1753	 34.05	0	1801980..1802960	-	326	167040428	-	Teth514_1792	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1754	 33.85	0	1802962..1803936	-	324	167040429	-	Teth514_1793	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1755	 31.41	0	1803938..1804819	-	293	167040430	-	Teth514_1794	-	binding-protein-dependent transport systems inner membrane component
1756	 34.55	0	1804816..1805802	-	328	167040431	-	Teth514_1795	-	binding-protein-dependent transport systems inner membrane component
1757	 37.44	0	1805818..1807668	-	616	167040432	-	Teth514_1796	-	extracellular solute-binding protein
1758	 29.53	-1	1810149..1810490	+	113	167040433	-	Teth514_1799	-	hypothetical protein
1759	 30.03	-1	1810515..1811090	+	191	167040434	-	Teth514_1800	-	hypothetical protein
1760	 37.02	0	1811554..1812096	-	180	167040435	-	Teth514_1802	-	glycosidase, PH1107-related
1761	 40.48	+1	1812135..1812218	-	27	167040436	-	Teth514_1803	-	hypothetical protein
1762	 30.11	-1	1812366..1813481	-	371	167040437	-	Teth514_1804	-	hypothetical protein
1763	 28.12	-1	1813609..1813953	+	114	167040438	-	Teth514_1805	-	FliA/WhiG family RNA polymerase sigma factor
1764	 27.39	-1	1813986..1814288	+	100	167040439	-	Teth514_1806	-	hypothetical protein
1765	 31.81	0	1814404..1815126	+	240	167040440	-	Teth514_1807	-	pseudouridine synthase
1766	 33.47	0	1815152..1815889	-	245	167040441	-	Teth514_1808	-	short-chain dehydrogenase/reductase SDR
1767	 34.69	0	1818094..1818462	-	122	167040442	-	Teth514_1809	-	hypothetical protein
1768	 31.36	0	1821595..1822302	-	235	167040443	-	Teth514_1810	-	PP-loop domain-containing protein
1769	 32.05	0	1822341..1823588	+	415	167040444	-	Teth514_1811	-	protein of unknown function Met10
1770	 41.88	+1	1823655..1823888	+	77	167040445	-	Teth514_1812	-	peptidoglycan binding domain-containing protein
1771	 34.55	0	1823885..1824457	-	190	167040446	-	Teth514_1813	-	orotate phosphoribosyltransferase
1772	 35.86	0	1824471..1825379	-	302	167040447	-	Teth514_1814	-	dihydroorotate dehydrogenase 1B
1773	 37.04	0	1825376..1826104	-	242	167040448	-	Teth514_1815	-	oxidoreductase FAD/NAD(P)-binding subunit
1774	 35.17	0	1826113..1827036	-	307	167040449	-	Teth514_1816	-	orotidine 5'-phosphate decarboxylase
1775	 38.19	0	1827095..1828390	-	431	167040450	-	Teth514_1817	-	dihydroorotase
1776	 39.56	+1	1828392..1829306	-	304	167040451	-	Teth514_1818	-	aspartate carbamoyltransferase catalytic subunit
1777	 38.73	+1	1829512..1830048	-	178	167040452	-	Teth514_1819	-	pyrimidine regulatory protein PyrR
1778	 36.35	0	1830265..1831260	+	331	167040453	-	Teth514_1820	-	AIR synthase-like protein
1779	 36.17	0	1831550..1832467	-	305	167040454	-	Teth514_1821	-	RluA family pseudouridine synthase
1780	 32.41	0	1832472..1832906	-	144	167040455	-	Teth514_1822	-	lipoprotein signal peptidase
1781	 30.82	0	1833175..1833732	-	185	167040456	-	Teth514_1823	-	GCN5-related N-acetyltransferase
1782	 32.00	0	1833777..1834451	-	224	167040457	-	Teth514_1824	-	hypothetical protein
1783	 28.24	-1	1834503..1836977	-	824	167040458	-	Teth514_1825	-	hypothetical protein
1784	 29.51	-1	1836952..1838703	-	583	167040459	-	Teth514_1826	-	ATPase
1785	 31.72	0	1838828..1841926	-	1032	167040460	-	Teth514_1827	-	type III restriction enzyme, res subunit
1786	 34.39	0	1841939..1843837	-	632	167040461	-	Teth514_1828	-	site-specific DNA-methyltransferase (adenine-specific)
1787	 26.45	-2	1843851..1844576	-	241	167040462	-	Teth514_1829	-	hypothetical protein
1788	 29.92	-1	1844577..1847738	-	1053	167040463	-	Teth514_1830	-	helicase domain-containing protein
1789	 29.29	-1	1849052..1851052	-	666	167040464	-	Teth514_1832	-	hypothetical protein
1790	 26.63	-1	1851071..1851652	-	193	167040465	-	Teth514_1833	-	hypothetical protein
1791	 28.54	-1	1851642..1853060	-	472	167040466	-	Teth514_1834	-	hypothetical protein
1792	 27.42	-1	1853053..1855269	-	738	167040467	-	Teth514_1835	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.