IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1663	 32.42	0	1711720..1712808	-	362	167040338	-	Teth514_1701	-	DNA protecting protein DprA
1664	 31.00	0	1712898..1713626	+	242	167040339	-	Teth514_1702	-	ribonuclease H
1665	 29.57	-1	1713633..1714004	+	123	167040340	-	Teth514_1703	-	hypothetical protein
1666	 35.26	0	1713993..1714976	-	327	167040341	-	Teth514_1704	-	tryptophanyl-tRNA synthetase
1667	 29.76	-1	1715058..1715924	-	288	167040342	-	Teth514_1705	-	hypothetical protein
1668	 35.03	0	1715987..1717519	-	510	167040343	-	Teth514_1706	-	Mg chelatase, subunit ChlI
1669	 32.73	0	1717536..1718369	-	277	167040344	-	Teth514_1707	-	GTP-binding protein, HSR1-related
1670	 34.49	0	1718414..1718758	-	114	167040345	-	Teth514_1708	-	50S ribosomal protein L19
1671	 34.02	0	1718781..1719509	-	242	167040346	-	Teth514_1709	-	tRNA (guanine-N1)-methyltransferase
1672	 35.32	0	1719506..1720009	-	167	167040347	-	Teth514_1710	-	16S rRNA processing protein RimM
1673	 39.04	+1	1720018..1720245	-	75	167040348	-	Teth514_1711	-	hypothetical protein
1674	 36.02	0	1720271..1720531	-	86	167040349	-	Teth514_1712	-	30S ribosomal protein S16
1675	 37.88	0	1720569..1721909	-	446	167040350	-	Teth514_1713	-	signal recognition particle protein
1676	 31.64	0	1721923..1722276	-	117	167040351	-	Teth514_1714	-	putative helix-turn-helix protein, YlxM/p13 family protein
1677	 32.50	0	1722376..1723335	-	319	167040352	-	Teth514_1715	-	signal recognition particle-docking protein FtsY
1678	 30.30	-1	1723328..1726918	-	1196	167040353	-	Teth514_1716	-	chromosome segregation protein SMC
1679	 30.77	0	1726961..1727194	-	77	167040354	-	Teth514_1717	-	hypothetical protein
1680	 42.53	+2	1727244..1727504	-	86	167040355	-	Teth514_1718	-	stage V sporulation protein S
1681	 30.42	-1	1727610..1728674	-	354	167040356	-	Teth514_1719	-	radical SAM domain-containing protein
1682	 35.09	0	1728671..1729411	-	246	167040357	-	Teth514_1720	-	ribonuclease III
1683	 37.64	0	1729383..1730612	-	409	167040358	-	Teth514_1721	-	beta-ketoacyl synthase
1684	 35.53	0	1730679..1730906	-	75	167040359	-	Teth514_1722	-	acyl carrier protein
1685	 34.81	0	1730949..1731692	-	247	167040360	-	Teth514_1723	-	3-oxoacyl-(acyl-carrier-protein) reductase
1686	 37.42	0	1731695..1732624	-	309	167040361	-	Teth514_1724	-	malonyl CoA-acyl carrier protein transacylase
1687	 39.28	+1	1732629..1733570	-	313	167040362	-	Teth514_1725	-	2-nitropropane dioxygenase, NPD
1688	 38.76	+1	1733583..1734578	-	331	167040363	-	Teth514_1726	-	3-oxoacyl-(acyl carrier protein) synthase III
1689	 36.34	0	1734571..1735569	-	332	167040364	-	Teth514_1727	-	putative glycerol-3-phosphate acyltransferase PlsX
1690	 35.16	0	1735553..1736155	-	200	167040365	-	Teth514_1728	-	fatty acid biosynthesis transcriptional regulator
1691	 38.80	+1	1736277..1736459	-	60	167040366	-	Teth514_1729	-	ribosomal protein L32
1692	 36.01	0	1736477..1736962	-	161	167040367	-	Teth514_1730	-	hypothetical protein
1693	 34.33	0	1737034..1738239	-	401	167040368	-	Teth514_1731	-	acetate kinase
1694	 37.54	0	1738259..1739257	-	332	167040369	-	Teth514_1732	-	phosphotransacetylase
1695	 30.18	-1	1739390..1740595	+	401	167040370	-	Teth514_1733	-	hypothetical protein
1696	 32.74	0	1740671..1741852	+	393	167040371	-	Teth514_1734	-	nucleoside recognition domain-containing protein
1697	 31.40	0	1741853..1742317	-	154	167040372	-	Teth514_1735	-	hypothetical protein
1698	 32.50	0	1742336..1742815	-	159	167040373	-	Teth514_1736	-	pantetheine-phosphate adenylyltransferase
1699	 30.48	0	1742812..1743372	-	186	167040374	-	Teth514_1737	-	putative methyltransferase
1700	 41.23	+1	1743590..1743817	-	75	167040375	-	Teth514_1738	-	small acid-soluble spore protein, alpha/beta type
1701	 43.42	+2	1743961..1744188	-	75	167040376	-	Teth514_1739	-	small acid-soluble spore protein, alpha/beta type
1702	 33.69	0	1744304..1745146	-	280	167040377	-	Teth514_1740	-	degV family protein
1703	 32.75	0	1745164..1747209	-	681	167040378	-	Teth514_1741	-	ATP-dependent DNA helicase RecG
1704	 31.59	0	1747222..1748823	-	533	167040379	-	Teth514_1742	-	Dak phosphatase
1705	 33.33	0	1748813..1749163	-	116	167040380	-	Teth514_1743	-	hypothetical protein
1706	 35.98	0	1749395..1749583	+	62	167040381	-	Teth514_1744	-	ribosomal protein L28
1707	 28.96	-1	1749620..1749802	-	60	167040382	-	Teth514_1745	-	hypothetical protein
1708	 30.66	0	1749862..1750497	-	211	167040383	-	Teth514_1746	-	thiamine pyrophosphokinase
1709	 32.57	0	1750494..1751144	-	216	167040384	-	Teth514_1747	-	ribulose-phosphate 3-epimerase
1710	 34.13	0	1751148..1752029	-	293	167040385	-	Teth514_1748	-	ribosome small subunit-dependent GTPase A
1711	 36.00	0	1752030..1753907	-	625	167040386	-	Teth514_1749	-	protein kinase
1712	 32.80	0	1753904..1754647	-	247	167040387	-	Teth514_1750	-	protein phosphatase 2C domain-containing protein
1713	 33.14	0	1754655..1755683	-	342	167040388	-	Teth514_1751	-	radical SAM protein
1714	 29.59	-1	1755781..1757115	-	444	167040389	-	Teth514_1752	-	sun protein
1715	 38.74	+1	1757134..1757817	-	227	167040390	-	Teth514_1753	-	peptidase, membrane zinc metallopeptidase, putative
1716	 32.01	0	1757823..1758575	-	250	167040391	-	Teth514_1754	-	hypothetical protein
1717	 36.66	0	1758596..1759528	-	310	167040392	-	Teth514_1755	-	methionyl-tRNA formyltransferase
1718	 36.67	0	1760009..1761268	+	419	167040393	-	Teth514_1756	-	transposase IS116/IS110/IS902 family protein
1719	 35.73	0	1761381..1761881	-	166	167040394	-	Teth514_1757	-	peptide deformylase
1720	 33.88	0	1761901..1764099	-	732	167040395	-	Teth514_1758	-	primosomal protein N'
1721	 34.42	0	1764150..1765349	-	399	167040396	-	Teth514_1759	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1722	 29.58	-1	1765361..1765573	-	70	167040397	-	Teth514_1760	-	DNA-directed RNA polymerase subunit omega
1723	 33.33	0	1765570..1766193	-	207	167040398	-	Teth514_1761	-	guanylate kinase
1724	 34.36	0	1766203..1766493	-	96	167040399	-	Teth514_1762	-	hypothetical protein
1725	 29.67	-1	1766506..1767378	-	290	167040400	-	Teth514_1763	-	hypothetical protein
1726	 35.68	0	1767424..1768233	-	269	167040401	-	Teth514_1764	-	diaminopimelate epimerase
1727	 35.46	0	1768340..1769470	-	376	167040402	-	Teth514_1765	-	major facilitator transporter
1728	 31.63	0	1769486..1770013	-	175	167040403	-	Teth514_1766	-	hypothetical protein
1729	 30.12	-1	1770211..1771923	+	570	167040404	-	Teth514_1767	-	fibronectin-binding A domain-containing protein
1730	 27.87	-1	1771948..1772496	-	182	167040405	-	Teth514_1768	-	2'-5' RNA ligase
1731	 38.16	0	1772942..1773976	+	344	167040406	-	Teth514_1769	-	ABC transporter related
1732	 42.81	+2	1773969..1774622	+	217	167040407	-	Teth514_1770	-	binding-protein-dependent transport systems inner membrane component
1733	 40.86	+1	1774655..1775491	+	278	167040408	-	Teth514_1771	-	YaeC family lipoprotein
1734	 39.76	+1	1775508..1776161	+	217	167040409	-	Teth514_1772	-	Asp/Glu racemase
1735	 34.96	0	1778133..1778501	-	122	167040410	-	Teth514_1773	-	hypothetical protein
1736	 32.43	0	1781587..1782468	-	293	167040411	-	Teth514_1774	-	cation diffusion facilitator family transporter
1737	 28.74	-1	1782654..1782827	+	57	167040412	-	Teth514_1775	-	hypothetical protein
1738	 36.54	0	1783356..1783916	-	186	167040413	-	Teth514_1777	-	phage SPO1 DNA polymerase-related protein
1739	 36.90	0	1783923..1784483	-	186	167040414	-	Teth514_1778	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
1740	 39.15	+1	1784503..1785345	-	280	167040415	-	Teth514_1779	-	fumarate hydratase
1741	 42.06	+1	1785491..1786384	+	297	167040416	-	Teth514_1780	-	PP-loop domain-containing protein
1742	 36.80	0	1786425..1791968	-	1847	167040417	-	Teth514_1781	-	alpha amylase, catalytic region
1743	 34.26	0	1792223..1792438	-	71	167040418	-	Teth514_1782	-	hypothetical protein
1744	 37.63	0	1792496..1793263	-	255	167040419	-	Teth514_1783	-	3-ketoacyl-(acyl-carrier-protein) reductase
1745	 33.95	0	1793510..1794487	-	325	167040420	-	Teth514_1784	-	D-alanine--D-alanine ligase
1746	 32.00	0	1794541..1795590	-	349	167040421	-	Teth514_1785	-	hypothetical protein
1747	 32.57	0	1795611..1796786	-	391	167040422	-	Teth514_1786	-	glycosyl transferase, group 1
1748	 34.19	0	1796816..1797862	-	348	167040423	-	Teth514_1787	-	nucleotidyl transferase
1749	 36.92	0	1798080..1798970	-	296	167040424	-	Teth514_1788	-	glycosidase, PH1107-related
1750	 35.31	0	1798985..1799893	-	302	167040425	-	Teth514_1789	-	glycosidase, PH1107-related
1751	 34.71	0	1799896..1801779	-	627	167040426	-	Teth514_1790	-	glycoside hydrolase family protein
1752	 23.89	-2	1801798..1801977	-	59	167040427	-	Teth514_1791	-	hypothetical protein
1753	 34.05	0	1801980..1802960	-	326	167040428	-	Teth514_1792	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1754	 33.85	0	1802962..1803936	-	324	167040429	-	Teth514_1793	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1755	 31.41	0	1803938..1804819	-	293	167040430	-	Teth514_1794	-	binding-protein-dependent transport systems inner membrane component
1756	 34.55	0	1804816..1805802	-	328	167040431	-	Teth514_1795	-	binding-protein-dependent transport systems inner membrane component
1757	 37.44	0	1805818..1807668	-	616	167040432	-	Teth514_1796	-	extracellular solute-binding protein
1758	 29.53	-1	1810149..1810490	+	113	167040433	-	Teth514_1799	-	hypothetical protein
1759	 30.03	-1	1810515..1811090	+	191	167040434	-	Teth514_1800	-	hypothetical protein
1760	 37.02	0	1811554..1812096	-	180	167040435	-	Teth514_1802	-	glycosidase, PH1107-related
1761	 40.48	+1	1812135..1812218	-	27	167040436	-	Teth514_1803	-	hypothetical protein
1762	 30.11	-1	1812366..1813481	-	371	167040437	-	Teth514_1804	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.