IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1570	 41.87	+1	1624065..1624439	+	124	167040245	-	Teth514_1608	-	S-adenosylmethionine decarboxylase proenzyme
1571	 26.15	-2	1624521..1625300	+	259	167040246	-	Teth514_1609	-	protein-glutamate O-methyltransferase
1572	 31.78	0	1625318..1626733	+	471	167040247	-	Teth514_1610	-	RNA modification protein
1573	 32.22	0	1626797..1629400	+	867	167040248	-	Teth514_1611	-	DNA mismatch repair protein
1574	 30.24	-1	1629397..1631241	+	614	167040249	-	Teth514_1612	-	DNA mismatch repair protein MutL
1575	 31.22	0	1631257..1632204	+	315	167040250	-	Teth514_1613	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1576	 35.25	0	1632247..1632507	+	86	167040251	-	Teth514_1614	-	RNA chaperone Hfq
1577	 35.72	0	1632581..1633375	+	264	167040252	-	Teth514_1615	-	pyrroline-5-carboxylate reductase
1578	 33.55	0	1633378..1633845	+	155	167040253	-	Teth514_1616	-	ribonuclease H
1579	 32.33	0	1634023..1635015	+	330	167040254	-	Teth514_1617	-	site-specific tyrosine recombinase XerC
1580	 34.98	0	1635065..1636339	-	424	167040255	-	Teth514_1618	-	aluminium resistance family protein
1581	 33.00	0	1636344..1637240	-	298	167040256	-	Teth514_1619	-	ATPase central domain-containing protein
1582	 33.76	0	1637315..1638736	-	473	167040257	-	Teth514_1620	-	adenylosuccinate lyase
1583	 32.91	0	1638750..1639937	-	395	167040258	-	Teth514_1621	-	aspartate aminotransferase
1584	 31.18	0	1639993..1640829	-	278	167040259	-	Teth514_1622	-	phosphotransferase domain-containing protein
1585	 42.53	+2	1640899..1641159	-	86	167040260	-	Teth514_1623	-	stage V sporulation protein S
1586	 32.82	0	1641232..1642014	-	260	167040261	-	Teth514_1624	-	metallophosphoesterase
1587	 37.46	0	1642142..1643668	-	508	167040262	-	Teth514_1625	-	metal dependent phosphohydrolase
1588	 25.13	-2	1643748..1644344	-	198	167040263	-	Teth514_1626	-	regulatory protein RecX
1589	 37.23	0	1644387..1645412	-	341	167040264	-	Teth514_1627	-	recombinase A
1590	 33.33	0	1645477..1646718	-	413	167040265	-	Teth514_1628	-	competence damage-inducible protein A
1591	 30.35	-1	1646732..1647268	-	178	167040266	-	Teth514_1629	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1592	 31.73	0	1647268..1648578	-	436	167040267	-	Teth514_1630	-	MiaB-like tRNA modifying enzyme YliG
1593	 32.82	0	1648597..1650723	-	708	167040268	-	Teth514_1631	-	cell divisionFtsK/SpoIIIE
1594	 27.14	-1	1650842..1651051	-	69	167040269	-	Teth514_1632	-	hypothetical protein
1595	 33.75	0	1651051..1651767	-	238	167040270	-	Teth514_1633	-	peptidase S14, ClpP
1596	 33.42	0	1651829..1653025	-	398	167040271	-	Teth514_1634	-	aspartate kinase I
1597	 29.37	-1	1653113..1653364	-	83	167040272	-	Teth514_1635	-	PRC-barrel domain-containing protein
1598	 35.79	0	1653376..1653822	-	148	167040273	-	Teth514_1636	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
1599	 30.71	0	1653806..1655062	-	418	167040274	-	Teth514_1637	-	processing peptidase
1600	 29.57	-1	1655103..1655819	-	238	167040275	-	Teth514_1638	-	polysaccharide deacetylase
1601	 37.33	0	1655922..1658024	-	700	167040276	-	Teth514_1639	-	polynucleotide phosphorylase/polyadenylase
1602	 33.33	0	1658076..1658342	-	88	167040277	-	Teth514_1640	-	30S ribosomal protein S15
1603	 29.23	-1	1658430..1659380	-	316	167040278	-	Teth514_1641	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1604	 32.63	0	1659396..1660247	-	283	167040279	-	Teth514_1642	-	tRNA pseudouridine synthase B
1605	 31.03	0	1660251..1661204	-	317	167040280	-	Teth514_1643	-	phosphoesterase domain-containing protein
1606	 31.11	0	1661201..1661560	-	119	167040281	-	Teth514_1644	-	ribosome-binding factor A
1607	 34.87	0	1661574..1663652	-	692	167040282	-	Teth514_1645	-	translation initiation factor IF-2
1608	 33.33	0	1663654..1663977	-	107	167040283	-	Teth514_1646	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
1609	 35.53	0	1663967..1664239	-	90	167040284	-	Teth514_1647	-	hypothetical protein
1610	 34.87	0	1664253..1665293	-	346	167040285	-	Teth514_1648	-	transcription elongation factor NusA
1611	 30.48	0	1665315..1665770	-	151	167040286	-	Teth514_1649	-	hypothetical protein
1612	 32.43	0	1665897..1670120	-	1407	167040287	-	Teth514_1650	-	DNA polymerase III PolC
1613	 31.56	0	1670134..1670754	-	206	167040288	-	Teth514_1651	-	glycosyl transferase family protein
1614	 33.43	0	1670754..1671815	-	353	167040289	-	Teth514_1652	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1615	 34.63	0	1671828..1672826	-	332	167040290	-	Teth514_1653	-	putative membrane-associated zinc metalloprotease
1616	 31.77	0	1672833..1673981	-	382	167040291	-	Teth514_1654	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1617	 30.26	-1	1673997..1674776	-	259	167040292	-	Teth514_1655	-	phosphatidate cytidylyltransferase
1618	 32.27	0	1674796..1675545	-	249	167040293	-	Teth514_1656	-	undecaprenyl diphosphate synthase
1619	 23.12	-2	1675593..1675778	-	61	167040294	-	Teth514_1657	-	hypothetical protein
1620	 33.33	0	1675775..1676329	-	184	167040295	-	Teth514_1658	-	ribosome recycling factor
1621	 37.82	0	1676332..1677045	-	237	167040296	-	Teth514_1659	-	uridylate kinase
1622	 33.98	0	1677163..1677777	-	204	167040297	-	Teth514_1660	-	elongation factor Ts
1623	 36.86	0	1677863..1678570	-	235	167040298	-	Teth514_1661	-	30S ribosomal protein S2
1624	 30.18	-1	1678714..1678998	-	94	167040299	-	Teth514_1662	-	hypothetical protein
1625	 31.45	0	1679012..1680391	-	459	167040300	-	Teth514_1663	-	hypothetical protein
1626	 29.01	-1	1680393..1681133	-	246	167040301	-	Teth514_1664	-	RNA polymerase, sigma 28 subunit, FliA/WhiG
1627	 34.15	0	1681152..1681640	-	162	167040302	-	Teth514_1665	-	chemoreceptor glutamine deamidase CheD
1628	 32.04	0	1681630..1682247	-	205	167040303	-	Teth514_1666	-	CheC, inhibitor of MCP methylation
1629	 31.22	0	1682253..1682678	-	141	167040304	-	Teth514_1667	-	putative CheW protein
1630	 31.37	0	1682694..1684676	-	660	167040305	-	Teth514_1668	-	CheA signal transduction histidine kinase
1631	 31.28	0	1684666..1685250	-	194	167040306	-	Teth514_1669	-	CheB methylesterase
1632	 30.79	0	1685254..1685883	-	209	167040307	-	Teth514_1670	-	type IV pilus assembly PilZ
1633	 31.46	0	1685880..1686734	-	284	167040308	-	Teth514_1671	-	cobyrinic acid a,c-diamide synthase
1634	 31.09	0	1686738..1687763	-	341	167040309	-	Teth514_1672	-	GTP-binding signal recognition particle
1635	 34.97	0	1687753..1689774	-	673	167040310	-	Teth514_1673	-	flagellar biosynthesis protein FlhA
1636	 34.35	0	1689785..1690867	-	360	167040311	-	Teth514_1674	-	flagellar biosynthetic protein FlhB
1637	 31.42	0	1690873..1691655	-	260	167040312	-	Teth514_1675	-	flagellar biosynthesis protein FliR
1638	 32.22	0	1691662..1691931	-	89	167040313	-	Teth514_1676	-	flagellar biosynthesis protein FliQ
1639	 31.08	0	1691945..1692610	-	221	167040314	-	Teth514_1677	-	flagellar biosynthesis protein FliP
1640	 28.84	-1	1692607..1692984	-	125	167040315	-	Teth514_1678	-	hypothetical protein
1641	 35.83	0	1692995..1693354	-	119	167040316	-	Teth514_1679	-	response regulator receiver protein
1642	 32.98	0	1693374..1694501	-	375	167040317	-	Teth514_1680	-	flagellar motor switch protein
1643	 30.53	0	1694494..1695492	-	332	167040318	-	Teth514_1681	-	flagellar motor switch protein FliM
1644	 27.45	-1	1695508..1695915	-	135	167040319	-	Teth514_1682	-	flagellar basal body-associated protein FliL
1645	 30.48	0	1695912..1696121	-	69	167040320	-	Teth514_1683	-	flagellar FlbD family protein
1646	 38.52	+1	1696170..1697423	-	417	167040321	-	Teth514_1684	-	hypothetical protein
1647	 31.98	0	1697503..1697871	-	122	167040322	-	Teth514_1685	-	flagellar operon protein
1648	 29.04	-1	1697881..1698276	-	131	167040323	-	Teth514_1686	-	flagellar hook capping protein
1649	 30.64	0	1698291..1699664	-	457	167040324	-	Teth514_1687	-	flagellar hook-length control protein
1650	 29.88	-1	1699681..1700259	-	192	167040325	-	Teth514_1688	-	hypothetical protein
1651	 25.68	-2	1700270..1700713	-	147	167040326	-	Teth514_1689	-	flagellar export protein FliJ
1652	 37.06	0	1700720..1702033	-	437	167040327	-	Teth514_1690	-	flagellar protein export ATPase FliI
1653	 30.58	0	1702026..1702751	-	241	167040328	-	Teth514_1691	-	flagellar biosynthesis/type III secretory pathway protein-like protein
1654	 33.93	0	1702789..1703796	-	335	167040329	-	Teth514_1692	-	flagellar motor switch protein G
1655	 34.66	0	1703808..1705319	-	503	167040330	-	Teth514_1693	-	flagellar M-ring protein FliF
1656	 34.01	0	1705347..1705643	-	98	167040331	-	Teth514_1694	-	flagellar hook-basal body protein FliE
1657	 36.71	0	1705650..1706093	-	147	167040332	-	Teth514_1695	-	flagellar basal-body rod protein FlgC
1658	 35.29	0	1706100..1706507	-	135	167040333	-	Teth514_1696	-	flagellar basal-body rod protein FlgB
1659	 32.27	0	1706804..1707556	-	250	167040334	-	Teth514_1697	-	transcriptional repressor CodY
1660	 34.06	0	1707586..1708965	-	459	167040335	-	Teth514_1698	-	ATP-dependent protease ATP-binding subunit
1661	 38.42	+1	1708978..1709508	-	176	167040336	-	Teth514_1699	-	ATP-dependent protease peptidase subunit
1662	 35.59	0	1709588..1711669	-	693	167040337	-	Teth514_1700	-	DNA topoisomerase I
1663	 32.42	0	1711720..1712808	-	362	167040338	-	Teth514_1701	-	DNA protecting protein DprA
1664	 31.00	0	1712898..1713626	+	242	167040339	-	Teth514_1702	-	ribonuclease H
1665	 29.57	-1	1713633..1714004	+	123	167040340	-	Teth514_1703	-	hypothetical protein
1666	 35.26	0	1713993..1714976	-	327	167040341	-	Teth514_1704	-	tryptophanyl-tRNA synthetase
1667	 29.76	-1	1715058..1715924	-	288	167040342	-	Teth514_1705	-	hypothetical protein
1668	 35.03	0	1715987..1717519	-	510	167040343	-	Teth514_1706	-	Mg chelatase, subunit ChlI
1669	 32.73	0	1717536..1718369	-	277	167040344	-	Teth514_1707	-	GTP-binding protein, HSR1-related
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.