IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1456	 31.07	0	1525579..1526019	+	146	167040131	-	Teth514_1493	-	ferric uptake regulator family protein
1457	 37.08	0	1526165..1527847	+	560	167040132	-	Teth514_1494	-	beta-lactamase domain-containing protein
1458	 33.03	0	1527865..1528194	+	109	167040133	-	Teth514_1495	-	hypothetical protein
1459	 33.76	0	1528195..1528665	+	156	167040134	-	Teth514_1496	-	hypothetical protein
1460	 30.59	0	1528750..1529805	+	351	167040135	-	Teth514_1497	-	aminodeoxychorismate lyase
1461	 30.99	0	1529818..1530456	+	212	167040136	-	Teth514_1498	-	O-methyltransferase family protein
1462	 35.63	0	1530464..1531681	+	405	167040137	-	Teth514_1499	-	peptidase U32
1463	 33.40	0	1531734..1533341	+	535	167040138	-	Teth514_1500	-	peptidoglycan glycosyltransferase
1464	 33.62	0	1533410..1534105	+	231	167040139	-	Teth514_1501	-	sporulation sigma factor SigK
1465	 29.34	-1	1534169..1534669	+	166	167040140	-	Teth514_1502	-	HAD family phosphatase
1466	 32.28	0	1534659..1535513	+	284	167040141	-	Teth514_1503	-	shikimate 5-dehydrogenase
1467	 36.73	0	1535627..1537303	+	558	167040142	-	Teth514_1504	-	type II secretion system protein E
1468	 38.38	+1	1537309..1538358	+	349	167040143	-	Teth514_1505	-	twitching motility protein
1469	 36.06	0	1538369..1539580	+	403	167040144	-	Teth514_1506	-	type II secretion system protein
1470	 36.34	0	1539605..1539970	+	121	167040145	-	Teth514_1507	-	Tfp pilus assembly protein PilE-like protein
1471	 31.62	0	1540038..1540796	+	252	167040146	-	Teth514_1508	-	peptidase A24A domain-containing protein
1472	 33.12	0	1540801..1541259	+	152	167040147	-	Teth514_1509	-	hypothetical protein
1473	 33.59	0	1541270..1541662	+	130	167040148	-	Teth514_1510	-	hypothetical protein
1474	 33.17	0	1541659..1542255	+	198	167040149	-	Teth514_1511	-	hypothetical protein
1475	 32.73	0	1542245..1542904	+	219	167040150	-	Teth514_1512	-	hypothetical protein
1476	 37.93	0	1542923..1543183	+	86	167040151	-	Teth514_1513	-	hypothetical protein
1477	 28.54	-1	1543194..1544153	+	319	167040152	-	Teth514_1514	-	Tfp pilus assembly protein ATPase PilM-like protein
1478	 28.09	-1	1544155..1544688	+	177	167040153	-	Teth514_1515	-	fimbrial assembly family protein
1479	 27.61	-1	1544689..1545369	+	226	167040154	-	Teth514_1516	-	hypothetical protein
1480	 33.53	0	1545467..1545982	+	171	167040155	-	Teth514_1517	-	shikimate kinase
1481	 36.52	0	1545979..1546857	+	292	167040156	-	Teth514_1518	-	xylose isomerase domain-containing protein
1482	 33.78	0	1546854..1547972	+	372	167040157	-	Teth514_1519	-	gamma-glutamyl kinase
1483	 36.71	0	1547962..1549206	+	414	167040158	-	Teth514_1520	-	gamma-glutamyl phosphate reductase
1484	 33.78	0	1549236..1549682	+	148	167040159	-	Teth514_1521	-	3-dehydroquinate dehydratase
1485	 31.64	0	1549687..1550751	+	354	167040160	-	Teth514_1522	-	peptidase M24
1486	 37.81	0	1550770..1551327	+	185	167040161	-	Teth514_1523	-	elongation factor P
1487	 36.15	0	1551376..1551837	+	153	167040162	-	Teth514_1524	-	hypothetical protein
1488	 32.03	0	1551932..1552930	+	332	167040163	-	Teth514_1525	-	AAA ATPase
1489	 30.80	0	1552927..1553439	+	170	167040164	-	Teth514_1526	-	stage III sporulation protein SpoAB
1490	 31.31	0	1553452..1553649	+	65	167040165	-	Teth514_1527	-	stage III sporulation AC family protein
1491	 30.23	-1	1553658..1554044	+	128	167040166	-	Teth514_1528	-	hypothetical protein
1492	 33.07	0	1554056..1555213	+	385	167040167	-	Teth514_1529	-	hypothetical protein
1493	 27.69	-1	1555222..1555788	+	188	167040168	-	Teth514_1530	-	hypothetical protein
1494	 33.16	0	1555808..1556389	+	193	167040169	-	Teth514_1531	-	hypothetical protein
1495	 30.95	0	1556408..1556953	+	181	167040170	-	Teth514_1532	-	hypothetical protein
1496	 34.07	0	1557055..1557462	+	135	167040171	-	Teth514_1533	-	hypothetical protein
1497	 34.28	0	1557561..1557983	+	140	167040172	-	Teth514_1534	-	transcription antitermination protein NusB
1498	 35.31	0	1557946..1558806	+	286	167040173	-	Teth514_1535	-	methenyltetrahydrofolate cyclohydrolase
1499	 32.50	0	1558787..1559992	+	401	167040174	-	Teth514_1536	-	exodeoxyribonuclease VII, large subunit
1500	 28.51	-1	1559985..1560212	+	75	167040175	-	Teth514_1537	-	exodeoxyribonuclease VII, small subunit
1501	 34.58	0	1560205..1561089	+	294	167040176	-	Teth514_1538	-	polyprenyl synthetase
1502	 31.33	0	1561845..1562444	+	199	167040177	-	Teth514_1539	-	hypothetical protein
1503	 35.05	0	1562455..1564317	+	620	167040178	-	Teth514_1540	-	1-deoxy-D-xylulose-5-phosphate synthase
1504	 32.58	0	1564320..1565120	+	266	167040179	-	Teth514_1541	-	hemolysin A
1505	 30.75	0	1565178..1566029	+	283	167040180	-	Teth514_1542	-	ATP-NAD/AcoX kinase
1506	 35.54	0	1566058..1566510	+	150	167040181	-	Teth514_1543	-	arginine repressor
1507	 30.04	-1	1566528..1568228	+	566	167040182	-	Teth514_1544	-	DNA repair protein RecN
1508	 30.14	-1	1568347..1569660	+	437	167040183	-	Teth514_1545	-	peptidase S55, SpoIVB
1509	 32.44	0	1569746..1570528	+	260	167040184	-	Teth514_1546	-	response regulator receiver protein
1510	 33.42	0	1570734..1571855	+	373	167040185	-	Teth514_1547	-	thiamin pyrophosphokinase, catalytic region
1511	 29.13	-1	1571867..1572793	+	308	167040186	-	Teth514_1548	-	hypothetical protein
1512	 31.30	0	1572804..1573490	+	228	167040187	-	Teth514_1549	-	glycosyl transferase family protein
1513	 29.27	-1	1573502..1574314	+	270	167040188	-	Teth514_1550	-	hypothetical protein
1514	 35.28	0	1574316..1575392	+	358	167040189	-	Teth514_1551	-	hypothetical protein
1515	 30.37	-1	1575567..1576106	+	179	167040190	-	Teth514_1552	-	NUDIX hydrolase
1516	 31.88	0	1576103..1577275	+	390	167040191	-	Teth514_1553	-	hypothetical protein
1517	 26.60	-1	1577341..1577964	+	207	167040192	-	Teth514_1554	-	hypothetical protein
1518	 28.87	-1	1578048..1578920	+	290	167040193	-	Teth514_1555	-	tyrosine recombinase XerD
1519	 34.47	0	1578985..1580130	+	381	167040194	-	Teth514_1556	-	Serine-type D-Ala-D-Ala carboxypeptidase
1520	 28.27	-1	1580247..1580582	+	111	167040195	-	Teth514_1557	-	anti-sigma-factor antagonist
1521	 35.65	0	1580596..1581027	+	143	167040196	-	Teth514_1558	-	anti-sigma F factor
1522	 30.36	-1	1581037..1581777	+	246	167040197	-	Teth514_1559	-	FliA/WhiG family RNA polymerase sigma factor
1523	 30.70	0	1581857..1582198	+	113	167040198	-	Teth514_1560	-	hypothetical protein
1524	 34.90	0	1582251..1582697	+	148	167040199	-	Teth514_1561	-	SpoVA protein
1525	 38.66	+1	1582713..1583726	+	337	167040200	-	Teth514_1562	-	stage V sporulation protein AD
1526	 33.59	0	1583698..1584093	+	131	167040201	-	Teth514_1563	-	SpoVA protein
1527	 29.05	-1	1584194..1585360	+	388	167040202	-	Teth514_1564	-	polynucleotide adenylyltransferase region
1528	 35.96	0	1585363..1585971	+	202	167040203	-	Teth514_1565	-	peptidase M50
1529	 27.87	-1	1585974..1586705	+	243	167040204	-	Teth514_1566	-	chromosome segregation and condensation protein ScpA
1530	 33.53	0	1586695..1587201	+	168	167040205	-	Teth514_1567	-	putative transcriptional regulator
1531	 34.36	0	1587223..1588098	+	291	167040206	-	Teth514_1568	-	hypothetical protein
1532	 27.51	-1	1588376..1588993	+	205	167040207	-	Teth514_1569	-	hypothetical protein
1533	 38.03	0	1589000..1589446	+	148	167040208	-	Teth514_1570	-	hypothetical protein
1534	 51.78	+2	1589948..1591156	+	402	167040209	-	Teth514_1571	-	sodium:dicarboxylate symporter
1535	 52.33	+2	1591514..1592824	+	436	167040210	-	Teth514_1572	-	hypothetical protein
1536	 51.62	+2	1592840..1593829	+	329	167040211	-	Teth514_1573	-	hypothetical protein
1537	 44.79	+2	1593845..1594324	+	159	167040212	-	Teth514_1574	-	hypothetical protein
1538	 34.12	0	1595063..1596211	+	382	167040213	-	Teth514_1575	-	Serine-type D-Ala-D-Ala carboxypeptidase
1539	 33.85	0	1596297..1597268	+	323	167040214	-	Teth514_1576	-	hypothetical protein
1540	 36.60	0	1597261..1598544	+	427	167040215	-	Teth514_1577	-	glucose-inhibited division protein A
1541	 33.90	0	1598567..1599277	+	236	167040216	-	Teth514_1578	-	pseudouridine synthase
1542	 28.31	-1	1599281..1599658	+	125	167040217	-	Teth514_1579	-	hypothetical protein
1543	 33.21	0	1599704..1600537	+	277	167040218	-	Teth514_1580	-	spermidine synthase
1544	 34.83	0	1600539..1601405	+	288	167040219	-	Teth514_1581	-	putative agmatinase
1545	 34.12	0	1601485..1602882	+	465	167040220	-	Teth514_1582	-	oxaloacetate decarboxylase
1546	 36.60	0	1602990..1603418	+	142	167040221	-	Teth514_1583	-	peptidoglycan-binding LysM
1547	 29.73	-1	1603437..1604075	-	212	167040222	-	Teth514_1584	-	hypothetical protein
1548	 32.15	0	1604154..1604912	+	252	167040223	-	Teth514_1585	-	stationary-phase survival protein SurE
1549	 36.36	0	1605048..1605245	+	65	167040224	-	Teth514_1586	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1550	 36.14	0	1605242..1606381	+	379	167040225	-	Teth514_1587	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
1551	 35.64	0	1606371..1607195	+	274	167040226	-	Teth514_1588	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1552	 34.75	0	1607192..1607755	+	187	167040227	-	Teth514_1589	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
1553	 32.29	0	1607734..1608597	+	287	167040228	-	Teth514_1590	-	RpiR family transcriptional regulator
1554	 36.37	0	1608695..1609945	+	416	167040229	-	Teth514_1591	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
1555	 31.44	0	1610347..1611615	+	422	167040230	-	Teth514_1592	-	citrate transporter
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.