IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 36.07	0	1486533..1487081	+	182	167040092	-	Teth514_1452	-	crossover junction endodeoxyribonuclease RuvC
1418	 32.80	0	1487078..1487641	+	187	167040093	-	Teth514_1453	-	Holliday junction DNA helicase RuvA
1419	 37.76	0	1487652..1488668	+	338	167040094	-	Teth514_1454	-	Holliday junction DNA helicase B
1420	 29.58	-1	1488661..1488873	+	70	167040095	-	Teth514_1455	-	hypothetical protein
1421	 32.94	0	1489001..1490026	+	341	167040096	-	Teth514_1456	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
1422	 35.46	0	1490045..1491172	+	375	167040097	-	Teth514_1457	-	queuine tRNA-ribosyltransferase
1423	 33.67	0	1491172..1491471	+	99	167040098	-	Teth514_1458	-	preprotein translocase, YajC subunit
1424	 34.61	0	1491559..1491951	+	130	167040099	-	Teth514_1459	-	hypothetical protein
1425	 32.32	0	1492211..1493596	+	461	167040100	-	Teth514_1460	-	radical SAM domain-containing protein
1426	 33.33	0	1493577..1494134	+	185	167040101	-	Teth514_1461	-	carbonic anhydrase
1427	 35.76	0	1494154..1495389	+	411	167040102	-	Teth514_1462	-	preprotein translocase subunit SecD
1428	 31.69	0	1495402..1496313	+	303	167040103	-	Teth514_1463	-	preprotein translocase subunit SecF
1429	 31.35	0	1496396..1498063	+	555	167040104	-	Teth514_1464	-	2-polyprenylphenol 6-hydroxylase
1430	 30.87	0	1498084..1500519	+	811	167040105	-	Teth514_1465	-	single-stranded-DNA-specific exonuclease RecJ
1431	 35.25	0	1500533..1501054	+	173	167040106	-	Teth514_1466	-	adenine phosphoribosyltransferase
1432	 34.44	0	1503271..1503720	+	149	167040107	-	Teth514_1469	-	D-tyrosyl-tRNA deacylase
1433	 34.28	0	1503731..1504363	+	210	167040108	-	Teth514_1470	-	beta-lactamase domain-containing protein
1434	 25.40	-2	1504386..1504637	-	83	167040109	-	Teth514_1471	-	MarR family transcriptional regulator
1435	 35.32	0	1504984..1506240	+	418	167040110	-	Teth514_1472	-	histidyl-tRNA synthetase
1436	 35.30	0	1506255..1508033	+	592	167040111	-	Teth514_1473	-	aspartyl-tRNA synthetase
1437	 33.06	0	1508272..1509006	+	244	167040112	-	Teth514_1474	-	UBA/THIF-type NAD/FAD binding protein
1438	 34.83	0	1509083..1509349	+	88	167040113	-	Teth514_1475	-	hypothetical protein
1439	 33.04	0	1509452..1510123	+	223	167040114	-	Teth514_1476	-	thioredoxin
1440	 38.90	+1	1510359..1511399	+	346	167040115	-	Teth514_1477	-	dihydrodipicolinate reductase
1441	 37.95	0	1511401..1511703	+	100	167040116	-	Teth514_1478	-	hypothetical protein
1442	 37.85	0	1511700..1513094	+	464	167040117	-	Teth514_1479	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1443	 39.47	+1	1513109..1513483	+	124	167040118	-	Teth514_1480	-	hypothetical protein
1444	 37.23	0	1513473..1515677	+	734	167040119	-	Teth514_1481	-	cobalamin B12-binding domain-containing protein
1445	 36.16	0	1515661..1517004	+	447	167040120	-	Teth514_1482	-	hypothetical protein
1446	 33.24	0	1517021..1518085	+	354	167040121	-	Teth514_1483	-	alanine racemase domain-containing protein
1447	 32.14	0	1518171..1518338	+	55	167040122	-	Teth514_1484	-	hypothetical protein
1448	 39.78	+1	1518552..1519001	+	149	167040123	-	Teth514_1485	-	BadM/Rrf2 family transcriptional regulator
1449	 32.04	0	1518979..1520142	+	387	167040124	-	Teth514_1486	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1450	 25.31	-2	1520230..1520391	+	53	167040125	-	Teth514_1487	-	hypothetical protein
1451	 27.10	-1	1520409..1521434	+	341	167040126	-	Teth514_1488	-	hypothetical protein
1452	 35.04	0	1521548..1524181	+	877	167040127	-	Teth514_1489	-	alanyl-tRNA synthetase
1453	 31.78	0	1524259..1524516	+	85	167040128	-	Teth514_1490	-	hypothetical protein
1454	 32.86	0	1524572..1524991	+	139	167040129	-	Teth514_1491	-	Holliday junction resolvase YqgF
1455	 40.70	+1	1525071..1525355	+	94	167040130	-	Teth514_1492	-	hypothetical protein
1456	 31.07	0	1525579..1526019	+	146	167040131	-	Teth514_1493	-	ferric uptake regulator family protein
1457	 37.08	0	1526165..1527847	+	560	167040132	-	Teth514_1494	-	beta-lactamase domain-containing protein
1458	 33.03	0	1527865..1528194	+	109	167040133	-	Teth514_1495	-	hypothetical protein
1459	 33.76	0	1528195..1528665	+	156	167040134	-	Teth514_1496	-	hypothetical protein
1460	 30.59	0	1528750..1529805	+	351	167040135	-	Teth514_1497	-	aminodeoxychorismate lyase
1461	 30.99	0	1529818..1530456	+	212	167040136	-	Teth514_1498	-	O-methyltransferase family protein
1462	 35.63	0	1530464..1531681	+	405	167040137	-	Teth514_1499	-	peptidase U32
1463	 33.40	0	1531734..1533341	+	535	167040138	-	Teth514_1500	-	peptidoglycan glycosyltransferase
1464	 33.62	0	1533410..1534105	+	231	167040139	-	Teth514_1501	-	sporulation sigma factor SigK
1465	 29.34	-1	1534169..1534669	+	166	167040140	-	Teth514_1502	-	HAD family phosphatase
1466	 32.28	0	1534659..1535513	+	284	167040141	-	Teth514_1503	-	shikimate 5-dehydrogenase
1467	 36.73	0	1535627..1537303	+	558	167040142	-	Teth514_1504	-	type II secretion system protein E
1468	 38.38	+1	1537309..1538358	+	349	167040143	-	Teth514_1505	-	twitching motility protein
1469	 36.06	0	1538369..1539580	+	403	167040144	-	Teth514_1506	-	type II secretion system protein
1470	 36.34	0	1539605..1539970	+	121	167040145	-	Teth514_1507	-	Tfp pilus assembly protein PilE-like protein
1471	 31.62	0	1540038..1540796	+	252	167040146	-	Teth514_1508	-	peptidase A24A domain-containing protein
1472	 33.12	0	1540801..1541259	+	152	167040147	-	Teth514_1509	-	hypothetical protein
1473	 33.59	0	1541270..1541662	+	130	167040148	-	Teth514_1510	-	hypothetical protein
1474	 33.17	0	1541659..1542255	+	198	167040149	-	Teth514_1511	-	hypothetical protein
1475	 32.73	0	1542245..1542904	+	219	167040150	-	Teth514_1512	-	hypothetical protein
1476	 37.93	0	1542923..1543183	+	86	167040151	-	Teth514_1513	-	hypothetical protein
1477	 28.54	-1	1543194..1544153	+	319	167040152	-	Teth514_1514	-	Tfp pilus assembly protein ATPase PilM-like protein
1478	 28.09	-1	1544155..1544688	+	177	167040153	-	Teth514_1515	-	fimbrial assembly family protein
1479	 27.61	-1	1544689..1545369	+	226	167040154	-	Teth514_1516	-	hypothetical protein
1480	 33.53	0	1545467..1545982	+	171	167040155	-	Teth514_1517	-	shikimate kinase
1481	 36.52	0	1545979..1546857	+	292	167040156	-	Teth514_1518	-	xylose isomerase domain-containing protein
1482	 33.78	0	1546854..1547972	+	372	167040157	-	Teth514_1519	-	gamma-glutamyl kinase
1483	 36.71	0	1547962..1549206	+	414	167040158	-	Teth514_1520	-	gamma-glutamyl phosphate reductase
1484	 33.78	0	1549236..1549682	+	148	167040159	-	Teth514_1521	-	3-dehydroquinate dehydratase
1485	 31.64	0	1549687..1550751	+	354	167040160	-	Teth514_1522	-	peptidase M24
1486	 37.81	0	1550770..1551327	+	185	167040161	-	Teth514_1523	-	elongation factor P
1487	 36.15	0	1551376..1551837	+	153	167040162	-	Teth514_1524	-	hypothetical protein
1488	 32.03	0	1551932..1552930	+	332	167040163	-	Teth514_1525	-	AAA ATPase
1489	 30.80	0	1552927..1553439	+	170	167040164	-	Teth514_1526	-	stage III sporulation protein SpoAB
1490	 31.31	0	1553452..1553649	+	65	167040165	-	Teth514_1527	-	stage III sporulation AC family protein
1491	 30.23	-1	1553658..1554044	+	128	167040166	-	Teth514_1528	-	hypothetical protein
1492	 33.07	0	1554056..1555213	+	385	167040167	-	Teth514_1529	-	hypothetical protein
1493	 27.69	-1	1555222..1555788	+	188	167040168	-	Teth514_1530	-	hypothetical protein
1494	 33.16	0	1555808..1556389	+	193	167040169	-	Teth514_1531	-	hypothetical protein
1495	 30.95	0	1556408..1556953	+	181	167040170	-	Teth514_1532	-	hypothetical protein
1496	 34.07	0	1557055..1557462	+	135	167040171	-	Teth514_1533	-	hypothetical protein
1497	 34.28	0	1557561..1557983	+	140	167040172	-	Teth514_1534	-	transcription antitermination protein NusB
1498	 35.31	0	1557946..1558806	+	286	167040173	-	Teth514_1535	-	methenyltetrahydrofolate cyclohydrolase
1499	 32.50	0	1558787..1559992	+	401	167040174	-	Teth514_1536	-	exodeoxyribonuclease VII, large subunit
1500	 28.51	-1	1559985..1560212	+	75	167040175	-	Teth514_1537	-	exodeoxyribonuclease VII, small subunit
1501	 34.58	0	1560205..1561089	+	294	167040176	-	Teth514_1538	-	polyprenyl synthetase
1502	 31.33	0	1561845..1562444	+	199	167040177	-	Teth514_1539	-	hypothetical protein
1503	 35.05	0	1562455..1564317	+	620	167040178	-	Teth514_1540	-	1-deoxy-D-xylulose-5-phosphate synthase
1504	 32.58	0	1564320..1565120	+	266	167040179	-	Teth514_1541	-	hemolysin A
1505	 30.75	0	1565178..1566029	+	283	167040180	-	Teth514_1542	-	ATP-NAD/AcoX kinase
1506	 35.54	0	1566058..1566510	+	150	167040181	-	Teth514_1543	-	arginine repressor
1507	 30.04	-1	1566528..1568228	+	566	167040182	-	Teth514_1544	-	DNA repair protein RecN
1508	 30.14	-1	1568347..1569660	+	437	167040183	-	Teth514_1545	-	peptidase S55, SpoIVB
1509	 32.44	0	1569746..1570528	+	260	167040184	-	Teth514_1546	-	response regulator receiver protein
1510	 33.42	0	1570734..1571855	+	373	167040185	-	Teth514_1547	-	thiamin pyrophosphokinase, catalytic region
1511	 29.13	-1	1571867..1572793	+	308	167040186	-	Teth514_1548	-	hypothetical protein
1512	 31.30	0	1572804..1573490	+	228	167040187	-	Teth514_1549	-	glycosyl transferase family protein
1513	 29.27	-1	1573502..1574314	+	270	167040188	-	Teth514_1550	-	hypothetical protein
1514	 35.28	0	1574316..1575392	+	358	167040189	-	Teth514_1551	-	hypothetical protein
1515	 30.37	-1	1575567..1576106	+	179	167040190	-	Teth514_1552	-	NUDIX hydrolase
1516	 31.88	0	1576103..1577275	+	390	167040191	-	Teth514_1553	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.