IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1376	 33.78	0	1447068..1448423	-	451	167040051	-	Teth514_1411	-	hypothetical protein
1377	 28.46	-1	1448520..1448786	+	88	167040052	-	Teth514_1412	-	hypothetical protein
1378	 35.20	0	1448947..1450125	+	392	167040053	-	Teth514_1413	-	beta-lactamase domain-containing protein
1379	 32.42	0	1450143..1450580	-	145	167040054	-	Teth514_1414	-	protein tyrosine phosphatase
1380	 30.10	-1	1450704..1451012	+	102	167040055	-	Teth514_1415	-	hypothetical protein
1381	 38.35	+1	1451230..1452126	+	298	167040056	-	Teth514_1416	-	6-phosphogluconate dehydrogenase-like protein
1382	 35.05	0	1452142..1453599	+	485	167040057	-	Teth514_1417	-	glucose-6-phosphate 1-dehydrogenase
1383	 33.82	0	1453618..1454235	+	205	167040058	-	Teth514_1418	-	cyclase family protein
1384	 25.42	-2	1454242..1454481	+	79	167040059	-	Teth514_1419	-	hypothetical protein
1385	 36.02	0	1454572..1455240	+	222	167040060	-	Teth514_1420	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
1386	 39.60	+1	1455332..1456225	+	297	167040061	-	Teth514_1421	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
1387	 33.56	0	1456227..1458017	+	596	167040062	-	Teth514_1422	-	oligoendopeptidase F
1388	 31.37	0	1458219..1459289	+	356	167040063	-	Teth514_1423	-	3-dehydroquinate synthase
1389	 36.00	0	1459404..1460228	+	274	167040064	-	Teth514_1424	-	prephenate dehydratase
1390	 39.13	+1	1460253..1461269	+	338	167040065	-	Teth514_1425	-	3-deoxy-7-phosphoheptulonate synthase
1391	 31.44	0	1461266..1462108	+	280	167040066	-	Teth514_1426	-	prephenate dehydrogenase
1392	 35.30	0	1462118..1463389	+	423	167040067	-	Teth514_1427	-	3-phosphoshikimate 1-carboxyvinyltransferase
1393	 31.71	0	1463445..1463690	+	81	167040068	-	Teth514_1428	-	hypothetical protein
1394	 40.05	+1	1463875..1464678	+	267	167040069	-	Teth514_1429	-	cell wall hydrolase, SleB
1395	 30.84	0	1464732..1465292	-	186	167040070	-	Teth514_1430	-	hypothetical protein
1396	 31.73	0	1465728..1466102	-	124	167040071	-	Teth514_1431	-	LmbE family protein
1397	 33.25	0	1466309..1467454	+	381	167040072	-	Teth514_1432	-	ROK family protein
1398	 31.50	0	1467467..1468228	+	253	167040073	-	Teth514_1433	-	glucosamine-6-phosphate deaminase
1399	 32.12	0	1468418..1469074	+	218	167040074	-	Teth514_1434	-	cytochrome c biogenesis protein, transmembrane region
1400	 31.72	0	1469087..1469707	+	206	167040075	-	Teth514_1435	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1401	 34.26	0	1469749..1470072	+	107	167040076	-	Teth514_1436	-	thioredoxin
1402	 36.36	0	1470126..1471613	-	495	167040077	-	Teth514_1437	-	Orn/Lys/Arg decarboxylase, major region
1403	 31.51	0	1471989..1474454	+	821	167040078	-	Teth514_1438	-	vitamin B12 dependent methionine synthase, activation region
1404	 36.10	0	1474515..1476215	+	566	167040079	-	Teth514_1439	-	ATPase of the ABC class-like protein
1405	 34.08	0	1476731..1479019	+	762	167040080	-	Teth514_1440	-	SpoIID/LytB domain-containing protein
1406	 32.93	0	1479156..1480397	+	413	167040081	-	Teth514_1441	-	small GTP-binding protein
1407	 32.09	0	1480387..1480869	-	160	167040082	-	Teth514_1442	-	hypothetical protein
1408	 37.53	0	1481091..1481519	+	142	167040083	-	Teth514_1443	-	NUDIX hydrolase
1409	 31.95	0	1481628..1482278	+	216	167040084	-	Teth514_1444	-	hypothetical protein
1410	 39.66	+1	1482363..1482773	+	136	167040085	-	Teth514_1445	-	CoA-binding domain-containing protein
1411	 30.51	0	1482800..1483153	-	117	167040086	-	Teth514_1446	-	hypothetical protein
1412	 33.89	0	1483150..1483506	-	118	167040087	-	Teth514_1447	-	hypothetical protein
1413	 36.37	0	1483638..1484558	+	306	167040088	-	Teth514_1448	-	cysteine synthase A
1414	 34.95	0	1484619..1485359	+	246	167040089	-	Teth514_1449	-	hypothetical protein
1415	 30.43	-1	1485379..1485825	-	148	167040090	-	Teth514_1450	-	putative CheW protein
1416	 29.10	-1	1485936..1486502	+	188	167040091	-	Teth514_1451	-	hypothetical protein
1417	 36.07	0	1486533..1487081	+	182	167040092	-	Teth514_1452	-	crossover junction endodeoxyribonuclease RuvC
1418	 32.80	0	1487078..1487641	+	187	167040093	-	Teth514_1453	-	Holliday junction DNA helicase RuvA
1419	 37.76	0	1487652..1488668	+	338	167040094	-	Teth514_1454	-	Holliday junction DNA helicase B
1420	 29.58	-1	1488661..1488873	+	70	167040095	-	Teth514_1455	-	hypothetical protein
1421	 32.94	0	1489001..1490026	+	341	167040096	-	Teth514_1456	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
1422	 35.46	0	1490045..1491172	+	375	167040097	-	Teth514_1457	-	queuine tRNA-ribosyltransferase
1423	 33.67	0	1491172..1491471	+	99	167040098	-	Teth514_1458	-	preprotein translocase, YajC subunit
1424	 34.61	0	1491559..1491951	+	130	167040099	-	Teth514_1459	-	hypothetical protein
1425	 32.32	0	1492211..1493596	+	461	167040100	-	Teth514_1460	-	radical SAM domain-containing protein
1426	 33.33	0	1493577..1494134	+	185	167040101	-	Teth514_1461	-	carbonic anhydrase
1427	 35.76	0	1494154..1495389	+	411	167040102	-	Teth514_1462	-	preprotein translocase subunit SecD
1428	 31.69	0	1495402..1496313	+	303	167040103	-	Teth514_1463	-	preprotein translocase subunit SecF
1429	 31.35	0	1496396..1498063	+	555	167040104	-	Teth514_1464	-	2-polyprenylphenol 6-hydroxylase
1430	 30.87	0	1498084..1500519	+	811	167040105	-	Teth514_1465	-	single-stranded-DNA-specific exonuclease RecJ
1431	 35.25	0	1500533..1501054	+	173	167040106	-	Teth514_1466	-	adenine phosphoribosyltransferase
1432	 34.44	0	1503271..1503720	+	149	167040107	-	Teth514_1469	-	D-tyrosyl-tRNA deacylase
1433	 34.28	0	1503731..1504363	+	210	167040108	-	Teth514_1470	-	beta-lactamase domain-containing protein
1434	 25.40	-2	1504386..1504637	-	83	167040109	-	Teth514_1471	-	MarR family transcriptional regulator
1435	 35.32	0	1504984..1506240	+	418	167040110	-	Teth514_1472	-	histidyl-tRNA synthetase
1436	 35.30	0	1506255..1508033	+	592	167040111	-	Teth514_1473	-	aspartyl-tRNA synthetase
1437	 33.06	0	1508272..1509006	+	244	167040112	-	Teth514_1474	-	UBA/THIF-type NAD/FAD binding protein
1438	 34.83	0	1509083..1509349	+	88	167040113	-	Teth514_1475	-	hypothetical protein
1439	 33.04	0	1509452..1510123	+	223	167040114	-	Teth514_1476	-	thioredoxin
1440	 38.90	+1	1510359..1511399	+	346	167040115	-	Teth514_1477	-	dihydrodipicolinate reductase
1441	 37.95	0	1511401..1511703	+	100	167040116	-	Teth514_1478	-	hypothetical protein
1442	 37.85	0	1511700..1513094	+	464	167040117	-	Teth514_1479	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1443	 39.47	+1	1513109..1513483	+	124	167040118	-	Teth514_1480	-	hypothetical protein
1444	 37.23	0	1513473..1515677	+	734	167040119	-	Teth514_1481	-	cobalamin B12-binding domain-containing protein
1445	 36.16	0	1515661..1517004	+	447	167040120	-	Teth514_1482	-	hypothetical protein
1446	 33.24	0	1517021..1518085	+	354	167040121	-	Teth514_1483	-	alanine racemase domain-containing protein
1447	 32.14	0	1518171..1518338	+	55	167040122	-	Teth514_1484	-	hypothetical protein
1448	 39.78	+1	1518552..1519001	+	149	167040123	-	Teth514_1485	-	BadM/Rrf2 family transcriptional regulator
1449	 32.04	0	1518979..1520142	+	387	167040124	-	Teth514_1486	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1450	 25.31	-2	1520230..1520391	+	53	167040125	-	Teth514_1487	-	hypothetical protein
1451	 27.10	-1	1520409..1521434	+	341	167040126	-	Teth514_1488	-	hypothetical protein
1452	 35.04	0	1521548..1524181	+	877	167040127	-	Teth514_1489	-	alanyl-tRNA synthetase
1453	 31.78	0	1524259..1524516	+	85	167040128	-	Teth514_1490	-	hypothetical protein
1454	 32.86	0	1524572..1524991	+	139	167040129	-	Teth514_1491	-	Holliday junction resolvase YqgF
1455	 40.70	+1	1525071..1525355	+	94	167040130	-	Teth514_1492	-	hypothetical protein
1456	 31.07	0	1525579..1526019	+	146	167040131	-	Teth514_1493	-	ferric uptake regulator family protein
1457	 37.08	0	1526165..1527847	+	560	167040132	-	Teth514_1494	-	beta-lactamase domain-containing protein
1458	 33.03	0	1527865..1528194	+	109	167040133	-	Teth514_1495	-	hypothetical protein
1459	 33.76	0	1528195..1528665	+	156	167040134	-	Teth514_1496	-	hypothetical protein
1460	 30.59	0	1528750..1529805	+	351	167040135	-	Teth514_1497	-	aminodeoxychorismate lyase
1461	 30.99	0	1529818..1530456	+	212	167040136	-	Teth514_1498	-	O-methyltransferase family protein
1462	 35.63	0	1530464..1531681	+	405	167040137	-	Teth514_1499	-	peptidase U32
1463	 33.40	0	1531734..1533341	+	535	167040138	-	Teth514_1500	-	peptidoglycan glycosyltransferase
1464	 33.62	0	1533410..1534105	+	231	167040139	-	Teth514_1501	-	sporulation sigma factor SigK
1465	 29.34	-1	1534169..1534669	+	166	167040140	-	Teth514_1502	-	HAD family phosphatase
1466	 32.28	0	1534659..1535513	+	284	167040141	-	Teth514_1503	-	shikimate 5-dehydrogenase
1467	 36.73	0	1535627..1537303	+	558	167040142	-	Teth514_1504	-	type II secretion system protein E
1468	 38.38	+1	1537309..1538358	+	349	167040143	-	Teth514_1505	-	twitching motility protein
1469	 36.06	0	1538369..1539580	+	403	167040144	-	Teth514_1506	-	type II secretion system protein
1470	 36.34	0	1539605..1539970	+	121	167040145	-	Teth514_1507	-	Tfp pilus assembly protein PilE-like protein
1471	 31.62	0	1540038..1540796	+	252	167040146	-	Teth514_1508	-	peptidase A24A domain-containing protein
1472	 33.12	0	1540801..1541259	+	152	167040147	-	Teth514_1509	-	hypothetical protein
1473	 33.59	0	1541270..1541662	+	130	167040148	-	Teth514_1510	-	hypothetical protein
1474	 33.17	0	1541659..1542255	+	198	167040149	-	Teth514_1511	-	hypothetical protein
1475	 32.73	0	1542245..1542904	+	219	167040150	-	Teth514_1512	-	hypothetical protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.