IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1332	 27.72	-1	1406251..1406784	+	177	167040007	-	Teth514_1366	-	ABC-type multidrug transport system ATPase and permease components-like protein
1333	 33.33	0	1406818..1407069	+	83	167040008	-	Teth514_1367	-	hypothetical protein
1334	 32.74	0	1407548..1408903	-	451	167040009	-	Teth514_1368	-	transposase, IS4 family protein
1335	 27.11	-1	1409674..1411038	+	454	167040010	-	Teth514_1369	-	radical SAM domain-containing protein
1336	 32.65	0	1411055..1412662	+	535	167040011	-	Teth514_1370	-	ABC transporter related
1337	 31.71	0	1412659..1414257	+	532	167040012	-	Teth514_1371	-	ABC transporter related
1338	 35.64	0	1414587..1415279	+	230	167040013	-	Teth514_1372	-	hypothetical protein
1339	 34.48	0	1415305..1416261	+	318	167040014	-	Teth514_1373	-	hypothetical protein
1340	 33.50	0	1416288..1416899	+	203	167040015	-	Teth514_1374	-	pyrrolidone-carboxylate peptidase
1341	 29.27	-1	1417050..1417172	+	40	167040016	-	Teth514_1375	-	hypothetical protein
1342	 26.64	-1	1417368..1418054	+	228	167040017	-	Teth514_1376	-	CRP/FNR family transcriptional regulator
1343	 33.93	0	1418123..1418629	-	168	167040018	-	Teth514_1377	-	PfpI family intracellular peptidase
1344	 34.96	0	1419046..1420884	+	612	167040019	-	Teth514_1378	-	NADH:flavin oxidoreductase/NADH oxidase
1345	 34.17	0	1421200..1421319	+	39	167040020	-	Teth514_1379	-	hypothetical protein
1346	 38.50	+1	1421378..1423177	+	599	167040021	-	Teth514_1380	-	aldehyde ferredoxin oxidoreductase
1347	 30.15	-1	1423261..1424298	+	345	167040022	-	Teth514_1381	-	radical SAM domain-containing protein
1348	 32.43	0	1424315..1424536	+	73	167040023	-	Teth514_1382	-	thiamineS protein
1349	 35.40	0	1424554..1425231	+	225	167040024	-	Teth514_1383	-	UBA/THIF-type NAD/FAD binding protein
1350	 39.25	+1	1426018..1426710	+	230	167040025	-	Teth514_1385	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1351	 42.71	+2	1427251..1428135	+	294	167040026	-	Teth514_1386	-	extracellular solute-binding protein
1352	 43.92	+2	1428150..1428848	+	232	167040027	-	Teth514_1387	-	binding-protein-dependent transport systems inner membrane component
1353	 46.19	+2	1428899..1429660	+	253	167040028	-	Teth514_1388	-	ABC transporter related
1354	 37.15	0	1429846..1430343	+	165	167040029	-	Teth514_1389	-	molybdenum cofactor synthesis domain-containing protein
1355	 35.82	0	1430324..1431568	+	414	167040030	-	Teth514_1390	-	molybdenum cofactor synthesis domain-containing protein
1356	 34.70	0	1431578..1433485	+	635	167040031	-	Teth514_1391	-	molybdenum cofactor synthesis domain-containing protein
1357	 34.07	0	1433498..1434451	+	317	167040032	-	Teth514_1392	-	molybdenum cofactor biosynthesis protein A
1358	 35.85	0	1434455..1434931	+	158	167040033	-	Teth514_1393	-	molybdenum cofactor biosynthesis protein C
1359	 38.10	0	1434934..1435374	+	146	167040034	-	Teth514_1394	-	MOSC domain-containing protein
1360	 34.69	0	1435532..1436047	+	171	167040035	-	Teth514_1395	-	ABC-type molybdate transport system periplasmic component-like protein
1361	 36.98	0	1436210..1436812	+	200	167040036	-	Teth514_1396	-	ABC-type sulfate transport system permease component-like protein
1362	 28.49	-1	1436791..1436976	+	61	167040037	-	Teth514_1397	-	ABC-type sugar transport systems ATPase components-like protein
1363	 37.95	0	1437120..1437314	+	64	167040038	-	Teth514_1398	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component-like protein
1364	 32.03	0	1437521..1437979	+	152	167040039	-	Teth514_1399	-	MOSC domain-containing protein
1365	 33.86	0	1438061..1438438	+	125	167040040	-	Teth514_1400	-	Fis family transcriptional regulator
1366	 29.27	-1	1438593..1439183	+	196	167040041	-	Teth514_1401	-	alpha/beta fold family hydrolase/acetyltransferase-like protein
1367	 38.89	+1	1439302..1439517	+	71	167040042	-	Teth514_1402	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1368	 30.74	0	1439829..1441061	-	410	167040043	-	Teth514_1403	-	Ste24 endopeptidase
1369	 29.01	-1	1441208..1442896	+	562	167040044	-	Teth514_1404	-	radical SAM domain-containing protein
1370	 34.29	0	1442961..1443692	+	243	167040045	-	Teth514_1405	-	glycerophosphodiester phosphodiesterase
1371	 31.26	0	1443694..1444899	+	401	167040046	-	Teth514_1406	-	major facilitator transporter
1372	 36.38	0	1444964..1445488	+	174	167040047	-	Teth514_1407	-	appr-1-p processing domain-containing protein
1373	 36.05	0	1445526..1446335	-	269	167040048	-	Teth514_1408	-	undecaprenyl pyrophosphate phosphatase
1374	 28.52	-1	1446482..1446751	+	89	167040049	-	Teth514_1409	-	sigmaK-factor processing regulatory BofA
1375	 38.31	0	1446838..1447038	+	66	167040050	-	Teth514_1410	-	small acid-soluble spore protein SspI
1376	 33.78	0	1447068..1448423	-	451	167040051	-	Teth514_1411	-	hypothetical protein
1377	 28.46	-1	1448520..1448786	+	88	167040052	-	Teth514_1412	-	hypothetical protein
1378	 35.20	0	1448947..1450125	+	392	167040053	-	Teth514_1413	-	beta-lactamase domain-containing protein
1379	 32.42	0	1450143..1450580	-	145	167040054	-	Teth514_1414	-	protein tyrosine phosphatase
1380	 30.10	-1	1450704..1451012	+	102	167040055	-	Teth514_1415	-	hypothetical protein
1381	 38.35	+1	1451230..1452126	+	298	167040056	-	Teth514_1416	-	6-phosphogluconate dehydrogenase-like protein
1382	 35.05	0	1452142..1453599	+	485	167040057	-	Teth514_1417	-	glucose-6-phosphate 1-dehydrogenase
1383	 33.82	0	1453618..1454235	+	205	167040058	-	Teth514_1418	-	cyclase family protein
1384	 25.42	-2	1454242..1454481	+	79	167040059	-	Teth514_1419	-	hypothetical protein
1385	 36.02	0	1454572..1455240	+	222	167040060	-	Teth514_1420	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
1386	 39.60	+1	1455332..1456225	+	297	167040061	-	Teth514_1421	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
1387	 33.56	0	1456227..1458017	+	596	167040062	-	Teth514_1422	-	oligoendopeptidase F
1388	 31.37	0	1458219..1459289	+	356	167040063	-	Teth514_1423	-	3-dehydroquinate synthase
1389	 36.00	0	1459404..1460228	+	274	167040064	-	Teth514_1424	-	prephenate dehydratase
1390	 39.13	+1	1460253..1461269	+	338	167040065	-	Teth514_1425	-	3-deoxy-7-phosphoheptulonate synthase
1391	 31.44	0	1461266..1462108	+	280	167040066	-	Teth514_1426	-	prephenate dehydrogenase
1392	 35.30	0	1462118..1463389	+	423	167040067	-	Teth514_1427	-	3-phosphoshikimate 1-carboxyvinyltransferase
1393	 31.71	0	1463445..1463690	+	81	167040068	-	Teth514_1428	-	hypothetical protein
1394	 40.05	+1	1463875..1464678	+	267	167040069	-	Teth514_1429	-	cell wall hydrolase, SleB
1395	 30.84	0	1464732..1465292	-	186	167040070	-	Teth514_1430	-	hypothetical protein
1396	 31.73	0	1465728..1466102	-	124	167040071	-	Teth514_1431	-	LmbE family protein
1397	 33.25	0	1466309..1467454	+	381	167040072	-	Teth514_1432	-	ROK family protein
1398	 31.50	0	1467467..1468228	+	253	167040073	-	Teth514_1433	-	glucosamine-6-phosphate deaminase
1399	 32.12	0	1468418..1469074	+	218	167040074	-	Teth514_1434	-	cytochrome c biogenesis protein, transmembrane region
1400	 31.72	0	1469087..1469707	+	206	167040075	-	Teth514_1435	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1401	 34.26	0	1469749..1470072	+	107	167040076	-	Teth514_1436	-	thioredoxin
1402	 36.36	0	1470126..1471613	-	495	167040077	-	Teth514_1437	-	Orn/Lys/Arg decarboxylase, major region
1403	 31.51	0	1471989..1474454	+	821	167040078	-	Teth514_1438	-	vitamin B12 dependent methionine synthase, activation region
1404	 36.10	0	1474515..1476215	+	566	167040079	-	Teth514_1439	-	ATPase of the ABC class-like protein
1405	 34.08	0	1476731..1479019	+	762	167040080	-	Teth514_1440	-	SpoIID/LytB domain-containing protein
1406	 32.93	0	1479156..1480397	+	413	167040081	-	Teth514_1441	-	small GTP-binding protein
1407	 32.09	0	1480387..1480869	-	160	167040082	-	Teth514_1442	-	hypothetical protein
1408	 37.53	0	1481091..1481519	+	142	167040083	-	Teth514_1443	-	NUDIX hydrolase
1409	 31.95	0	1481628..1482278	+	216	167040084	-	Teth514_1444	-	hypothetical protein
1410	 39.66	+1	1482363..1482773	+	136	167040085	-	Teth514_1445	-	CoA-binding domain-containing protein
1411	 30.51	0	1482800..1483153	-	117	167040086	-	Teth514_1446	-	hypothetical protein
1412	 33.89	0	1483150..1483506	-	118	167040087	-	Teth514_1447	-	hypothetical protein
1413	 36.37	0	1483638..1484558	+	306	167040088	-	Teth514_1448	-	cysteine synthase A
1414	 34.95	0	1484619..1485359	+	246	167040089	-	Teth514_1449	-	hypothetical protein
1415	 30.43	-1	1485379..1485825	-	148	167040090	-	Teth514_1450	-	putative CheW protein
1416	 29.10	-1	1485936..1486502	+	188	167040091	-	Teth514_1451	-	hypothetical protein
1417	 36.07	0	1486533..1487081	+	182	167040092	-	Teth514_1452	-	crossover junction endodeoxyribonuclease RuvC
1418	 32.80	0	1487078..1487641	+	187	167040093	-	Teth514_1453	-	Holliday junction DNA helicase RuvA
1419	 37.76	0	1487652..1488668	+	338	167040094	-	Teth514_1454	-	Holliday junction DNA helicase B
1420	 29.58	-1	1488661..1488873	+	70	167040095	-	Teth514_1455	-	hypothetical protein
1421	 32.94	0	1489001..1490026	+	341	167040096	-	Teth514_1456	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
1422	 35.46	0	1490045..1491172	+	375	167040097	-	Teth514_1457	-	queuine tRNA-ribosyltransferase
1423	 33.67	0	1491172..1491471	+	99	167040098	-	Teth514_1458	-	preprotein translocase, YajC subunit
1424	 34.61	0	1491559..1491951	+	130	167040099	-	Teth514_1459	-	hypothetical protein
1425	 32.32	0	1492211..1493596	+	461	167040100	-	Teth514_1460	-	radical SAM domain-containing protein
1426	 33.33	0	1493577..1494134	+	185	167040101	-	Teth514_1461	-	carbonic anhydrase
1427	 35.76	0	1494154..1495389	+	411	167040102	-	Teth514_1462	-	preprotein translocase subunit SecD
1428	 31.69	0	1495402..1496313	+	303	167040103	-	Teth514_1463	-	preprotein translocase subunit SecF
1429	 31.35	0	1496396..1498063	+	555	167040104	-	Teth514_1464	-	2-polyprenylphenol 6-hydroxylase
1430	 30.87	0	1498084..1500519	+	811	167040105	-	Teth514_1465	-	single-stranded-DNA-specific exonuclease RecJ
1431	 35.25	0	1500533..1501054	+	173	167040106	-	Teth514_1466	-	adenine phosphoribosyltransferase
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.