IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1232	 39.90	+1	1298910..1301468	+	852	167039907	-	Teth514_1263	-	phage tape measure protein
1233	 40.05	+1	1301482..1302255	+	257	167039908	-	Teth514_1264	-	phage putative tail component
1234	 39.48	+1	1302260..1304782	+	840	167039909	-	Teth514_1265	-	phage minor structural protein
1235	 44.62	+2	1304798..1304992	+	64	167039910	-	Teth514_1266	-	hypothetical protein
1236	 40.78	+1	1304993..1305583	+	196	167039911	-	Teth514_1267	-	hypothetical protein
1237	 41.04	+1	1305625..1308051	+	808	167039912	-	Teth514_1268	-	glycosyl hydrolase-like protein
1238	 36.01	0	1308133..1308543	+	136	167039913	-	Teth514_1269	-	toxin secretion/phage lysis holin
1239	 39.60	+1	1308540..1309241	+	233	167039914	-	Teth514_1270	-	N-acetylmuramoyl-L-alanine amidase
1240	 33.77	0	1309374..1309604	+	76	167039915	-	Teth514_1271	-	hypothetical protein
1241	 35.90	0	1309657..1311216	+	519	167039916	-	Teth514_1272	-	resolvase domain-containing protein
1242	 39.20	+1	1311213..1311638	+	141	167039917	-	Teth514_1273	-	recombinase
1243	 35.43	0	1311640..1313211	+	523	167039918	-	Teth514_1274	-	resolvase domain-containing protein
1244	 33.33	0	1313528..1313902	+	124	167039919	-	Teth514_1275	-	regulatory protein, ArsR
1245	 38.67	+1	1313916..1316276	+	786	167039920	-	Teth514_1276	-	heavy metal translocating P-type ATPase
1246	 32.26	0	1316363..1316827	+	154	167039921	-	Teth514_1277	-	lipoprotein signal peptidase
1247	 33.33	0	1316985..1317470	+	161	167039922	-	Teth514_1278	-	hypothetical protein
1248	 37.53	0	1317821..1318606	+	261	167039923	-	Teth514_1279	-	dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein
1249	 32.99	0	1318703..1319290	+	195	167039924	-	Teth514_1280	-	alkylhydroperoxidase
1250	 32.51	0	1319314..1320534	+	406	167039925	-	Teth514_1281	-	patatin
1251	 37.50	0	1320782..1320949	+	55	167039926	-	Teth514_1282	-	hypothetical protein
1252	 32.79	0	1321106..1321471	+	121	167039927	-	Teth514_1283	-	hypothetical protein
1253	 35.96	0	1321485..1322816	+	443	167039928	-	Teth514_1284	-	recombination factor protein RarA
1254	 34.62	0	1323124..1323825	-	233	167039929	-	Teth514_1285	-	phosphoenolpyruvate carboxykinase (ATP)
1255	 31.82	0	1324065..1324262	+	65	167039930	-	Teth514_1286	-	hypothetical protein
1256	 32.26	0	1324251..1324715	-	154	167039931	-	Teth514_1287	-	NUDIX hydrolase
1257	 34.03	0	1324803..1325660	+	285	167039932	-	Teth514_1288	-	RluA family pseudouridine synthase
1258	 33.00	0	1325652..1326548	-	298	167039933	-	Teth514_1289	-	radical SAM domain-containing protein
1259	 33.70	0	1326926..1328569	+	547	167039934	-	Teth514_1290	-	phosphoribulokinase/uridine kinase
1260	 36.79	0	1328614..1329018	+	134	167039935	-	Teth514_1291	-	hypothetical protein
1261	 32.05	0	1329297..1329452	+	51	167039936	-	Teth514_1292	-	hypothetical protein
1262	 35.72	0	1329596..1330936	+	446	167039937	-	Teth514_1293	-	radical SAM domain-containing protein
1263	 31.81	0	1330993..1331649	+	218	167039938	-	Teth514_1294	-	putative transcriptional regulator
1264	 39.15	+1	1331772..1331960	+	62	167039939	-	Teth514_1295	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1265	 32.89	0	1332331..1332558	+	75	167039940	-	Teth514_1296	-	small acid-soluble spore protein, alpha/beta type
1266	 33.59	0	1332666..1335026	+	786	167039941	-	Teth514_1297	-	peptidase S16, lon domain-containing protein
1267	 30.80	0	1335026..1336168	+	380	167039942	-	Teth514_1298	-	hypothetical protein
1268	 33.80	0	1336149..1336790	+	213	167039943	-	Teth514_1299	-	endonuclease III
1269	 31.78	0	1336889..1338364	+	491	167039944	-	Teth514_1300	-	VanW family protein
1270	 33.33	0	1338411..1338911	-	166	167039945	-	Teth514_1301	-	ferric uptake regulator family protein
1271	 29.82	-1	1339012..1339836	+	274	167039946	-	Teth514_1302	-	Cof-like hydrolase
1272	 38.83	+1	1339855..1340127	+	90	167039947	-	Teth514_1303	-	acylphosphatase
1273	 35.09	0	1341739..1342761	+	340	167039948	-	Teth514_1305	-	DeoR family transcriptional regulator
1274	 35.42	0	1342810..1343817	+	335	167039949	-	Teth514_1306	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1275	 38.16	0	1343884..1345065	+	393	167039950	-	Teth514_1307	-	phosphoglycerate kinase
1276	 38.55	+1	1345079..1345825	+	248	167039951	-	Teth514_1308	-	triosephosphate isomerase
1277	 36.25	0	1345838..1347382	+	514	167039952	-	Teth514_1309	-	phosphoglyceromutase
1278	 38.60	+1	1347409..1348698	+	429	167039953	-	Teth514_1310	-	phosphopyruvate hydratase
1279	 36.67	0	1348815..1349054	+	79	167039954	-	Teth514_1311	-	preprotein translocase subunit SecG
1280	 33.93	0	1349142..1350143	+	333	167039955	-	Teth514_1312	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1281	 31.15	0	1350292..1352079	+	595	167039956	-	Teth514_1313	-	DNA primase
1282	 37.80	0	1352111..1353184	+	357	167039957	-	Teth514_1314	-	RNA polymerase sigma factor RpoD
1283	 33.54	0	1353641..1355059	-	472	167039958	-	Teth514_1315	-	hypothetical protein
1284	 29.93	-1	1355215..1355919	+	234	167039959	-	Teth514_1316	-	hypothetical protein
1285	 34.59	0	1355879..1356994	+	371	167039960	-	Teth514_1317	-	hypothetical protein
1286	 35.75	0	1357572..1358273	+	233	167039961	-	Teth514_1318	-	purine nucleoside phosphorylase
1287	 32.50	0	1358342..1359298	+	318	167039962	-	Teth514_1319	-	mannose-6-phosphate isomerase, class I
1288	 51.78	+2	1359957..1361105	+	382	167039963	-	Teth514_1320	-	sodium/hydrogen exchanger
1289	 46.07	+2	1361111..1361479	+	122	167039964	-	Teth514_1321	-	hypothetical protein
1290	 31.25	0	1361621..1361860	-	79	167039965	-	Teth514_1322	-	redox-active disulfide protein 2
1291	 38.38	+1	1361963..1363132	-	389	167039966	-	Teth514_1323	-	permease
1292	 30.56	0	1363184..1363507	-	107	167039967	-	Teth514_1324	-	regulatory protein, ArsR
1293	 38.93	+1	1364264..1365175	+	303	167039968	-	Teth514_1325	-	RNA-directed DNA polymerase (Reverse transcriptase)
1294	 34.84	0	1365283..1365879	+	198	167039969	-	Teth514_1326	-	hypothetical protein
1295	 34.08	0	1367359..1368159	+	266	167039970	-	Teth514_1329	-	AAA ATPase
1296	 34.55	0	1368366..1368530	+	54	167039971	-	Teth514_1330	-	hypothetical protein
1297	 26.43	-2	1368514..1368933	+	139	167039972	-	Teth514_1331	-	GtrA family protein
1298	 36.63	0	1368946..1371099	+	717	167039973	-	Teth514_1332	-	glycosyl transferase family protein
1299	 33.85	0	1371300..1372649	+	449	167039974	-	Teth514_1333	-	MiaB-like tRNA modifying enzyme
1300	 34.20	0	1372686..1373030	+	114	167039975	-	Teth514_1334	-	histidine triad (HIT) protein
1301	 38.17	0	1373142..1373327	+	61	167039976	-	Teth514_1335	-	30S ribosomal protein S21
1302	 34.68	0	1373342..1373785	+	147	167039977	-	Teth514_1336	-	GatB/Yqey domain-containing protein
1303	 34.76	0	1373811..1374860	-	349	167039978	-	Teth514_1337	-	asparaginase/glutaminase
1304	 30.37	-1	1374956..1375225	+	89	167039979	-	Teth514_1338	-	hypothetical protein
1305	 28.79	-1	1375237..1376424	+	395	167039980	-	Teth514_1339	-	putative stage IV sporulation YqfD
1306	 35.66	0	1376421..1377407	+	328	167039981	-	Teth514_1340	-	PhoH family protein
1307	 32.27	0	1377421..1379487	+	688	167039982	-	Teth514_1341	-	metal dependent phosphohydrolase
1308	 33.54	0	1379484..1379963	+	159	167039983	-	Teth514_1342	-	putative metalloprotease
1309	 32.47	0	1379968..1380666	+	232	167039984	-	Teth514_1343	-	diacylglycerol kinase
1310	 33.11	0	1380678..1381586	+	302	167039985	-	Teth514_1344	-	GTP-binding protein Era
1311	 38.10	0	1381622..1382293	+	223	167039986	-	Teth514_1345	-	deoxyribose-phosphate aldolase
1312	 30.25	-1	1382299..1383045	+	248	167039987	-	Teth514_1346	-	DNA repair protein RecO
1313	 32.85	0	1383060..1383470	+	136	167039988	-	Teth514_1347	-	ubiquitin-associated domain-containing protein
1314	 34.63	0	1383580..1384968	+	462	167039989	-	Teth514_1348	-	glycyl-tRNA synthetase
1315	 36.60	0	1385160..1385801	+	213	167039990	-	Teth514_1349	-	signal-transduction protein
1316	 31.73	0	1385815..1386627	+	270	167039991	-	Teth514_1350	-	hypothetical protein
1317	 38.04	0	1386624..1389257	+	877	167039992	-	Teth514_1351	-	pyruvate phosphate dikinase
1318	 36.59	0	1389383..1389934	+	183	167039993	-	Teth514_1352	-	metal dependent phosphohydrolase
1319	 33.24	0	1389938..1392106	+	722	167039994	-	Teth514_1353	-	ribonuclease R
1320	 31.42	0	1392216..1392686	+	156	167039995	-	Teth514_1354	-	SsrA-binding protein
1321	 33.82	0	1394518..1396158	+	546	167039996	-	Teth514_1355	-	ABC transporter related
1322	 28.26	-1	1396456..1397421	-	321	167039997	-	Teth514_1356	-	helix-turn-helix domain-containing protein
1323	 32.88	0	1397899..1398342	+	147	167039998	-	Teth514_1357	-	hypothetical protein
1324	 29.01	-1	1398474..1399538	+	354	167039999	-	Teth514_1358	-	hypothetical protein
1325	 29.08	-1	1399522..1400649	+	375	167040000	-	Teth514_1359	-	hypothetical protein
1326	 34.96	0	1400652..1401329	+	225	167040001	-	Teth514_1360	-	ABC transporter related
1327	 29.41	-1	1401555..1401758	+	67	167040002	-	Teth514_1361	-	hypothetical protein
1328	 38.96	+1	1401795..1402043	-	82	167040003	-	Teth514_1362	-	XRE family transcriptional regulator
1329	 37.04	0	1402578..1402712	+	44	167040004	-	Teth514_1363	-	hypothetical protein
1330	 29.50	-1	1403082..1404464	+	460	167040005	-	Teth514_1364	-	radical SAM domain-containing protein
1331	 33.28	0	1404484..1406217	+	577	167040006	-	Teth514_1365	-	ABC transporter related
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.