IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1183	 37.35	0	1255235..1255807	-	190	167039858	-	Teth514_1213	-	manganese containing catalase
1184	 35.27	0	1255821..1256078	-	85	167039859	-	Teth514_1214	-	hypothetical protein
1185	 38.51	+1	1256083..1256256	-	57	167039860	-	Teth514_1215	-	hypothetical protein
1186	 33.19	0	1256464..1257822	+	452	167039861	-	Teth514_1216	-	RNA methyltransferase
1187	 39.56	+1	1258025..1258924	-	299	167039862	-	Teth514_1217	-	hypothetical protein
1188	 37.61	0	1258950..1261922	-	990	167039863	-	Teth514_1218	-	hypothetical protein
1189	 32.19	0	1261942..1262727	-	261	167039864	-	Teth514_1219	-	hypothetical protein
1190	 40.26	+1	1262714..1263175	-	153	167039865	-	Teth514_1220	-	hypothetical protein
1191	 36.71	0	1263177..1264568	-	463	167039866	-	Teth514_1221	-	restriction modification system DNA specificity subunit
1192	 37.79	0	1264573..1266231	-	552	167039867	-	Teth514_1222	-	N-6 DNA methylase
1193	 39.23	+1	1266500..1267432	+	310	167039868	-	Teth514_1223	-	transposase, IS111A/IS1328/IS1533
1194	 38.89	+1	1267486..1267737	+	83	167039869	-	Teth514_1224	-	hypothetical protein
1195	 37.14	0	1267858..1268067	-	69	167039870	-	Teth514_1225	-	hypothetical protein
1196	 38.60	+1	1268119..1268346	-	75	167039871	-	Teth514_1226	-	DNA binding domain-containing protein
1197	 33.45	0	1268355..1270133	-	592	167039872	-	Teth514_1227	-	hypothetical protein
1198	 34.22	0	1270138..1270587	-	149	167039873	-	Teth514_1228	-	hypothetical protein
1199	 35.89	0	1270580..1271596	-	338	167039874	-	Teth514_1229	-	hypothetical protein
1200	 41.41	+1	1272255..1272749	+	164	167039875	-	Teth514_1230	-	ECF subfamily RNA polymerase sigma-24 factor
1201	 40.57	+1	1273069..1273386	+	105	167039876	-	Teth514_1231	-	hypothetical protein
1202	 41.31	+1	1273383..1274510	+	375	167039877	-	Teth514_1232	-	hypothetical protein
1203	 38.32	0	1274516..1275076	+	186	167039878	-	Teth514_1233	-	hypothetical protein
1204	 41.50	+1	1275073..1277007	+	644	167039879	-	Teth514_1234	-	DNA-directed DNA polymerase
1205	 39.65	+1	1277094..1277885	+	263	167039880	-	Teth514_1235	-	prophage antirepressor
1206	 40.24	+1	1277889..1278308	+	139	167039881	-	Teth514_1236	-	hypothetical protein
1207	 41.30	+1	1278305..1280650	+	781	167039882	-	Teth514_1237	-	virulence-associated E family protein
1208	 37.59	0	1280908..1281189	+	93	167039883	-	Teth514_1238	-	hypothetical protein
1209	 39.93	+1	1281170..1282519	+	449	167039884	-	Teth514_1239	-	SNF2-related protein
1210	 40.09	+1	1282524..1282982	+	152	167039885	-	Teth514_1240	-	hypothetical protein
1211	 47.50	+2	1283102..1283461	+	119	167039886	-	Teth514_1241	-	HNH endonuclease
1212	 42.75	+2	1283573..1284124	+	183	167039887	-	Teth514_1242	-	hypothetical protein
1213	 39.12	+1	1284142..1285317	+	391	167039888	-	Teth514_1243	-	S-adenosylmethionine synthetase
1214	 41.00	+1	1285298..1286536	+	412	167039889	-	Teth514_1244	-	DNA methylase N-4/N-6 domain-containing protein
1215	 46.18	+2	1287128..1288411	+	427	167039890	-	Teth514_1245	-	RNA-directed DNA polymerase (Reverse transcriptase)
1216	 40.72	+1	1288563..1289252	+	229	167039891	-	Teth514_1246	-	hypothetical protein
1217	 42.54	+2	1289252..1289479	+	75	167039892	-	Teth514_1247	-	hypothetical protein
1218	 41.44	+1	1289615..1290514	+	299	167039893	-	Teth514_1248	-	hypothetical protein
1219	 43.07	+2	1290552..1291013	+	153	167039894	-	Teth514_1249	-	hypothetical protein
1220	 32.26	0	1290998..1291183	+	61	167039895	-	Teth514_1250	-	hypothetical protein
1221	 41.92	+1	1291248..1292855	+	535	167039896	-	Teth514_1251	-	phage terminase
1222	 42.44	+2	1292868..1294130	+	420	167039897	-	Teth514_1252	-	HK97 family phage portal protein
1223	 41.56	+1	1294127..1294807	+	226	167039898	-	Teth514_1253	-	peptidase S14, ClpP
1224	 43.00	+2	1294819..1296018	+	399	167039899	-	Teth514_1254	-	HK97 family phage major capsid protein
1225	 44.29	+2	1296034..1296252	+	72	167039900	-	Teth514_1255	-	hypothetical protein
1226	 41.10	+1	1296272..1296580	+	102	167039901	-	Teth514_1256	-	uncharacterized phage protein
1227	 39.29	+1	1296584..1296919	+	111	167039902	-	Teth514_1257	-	phage head-tail adaptor, putative
1228	 39.58	+1	1296912..1297343	+	143	167039903	-	Teth514_1258	-	HK97 family phage protein
1229	 35.03	0	1297340..1297693	+	117	167039904	-	Teth514_1259	-	hypothetical protein
1230	 43.45	+2	1297697..1298299	+	200	167039905	-	Teth514_1260	-	phi13 family phage major tail protein
1231	 39.58	+1	1298312..1298695	+	127	167039906	-	Teth514_1261	-	hypothetical protein
1232	 39.90	+1	1298910..1301468	+	852	167039907	-	Teth514_1263	-	phage tape measure protein
1233	 40.05	+1	1301482..1302255	+	257	167039908	-	Teth514_1264	-	phage putative tail component
1234	 39.48	+1	1302260..1304782	+	840	167039909	-	Teth514_1265	-	phage minor structural protein
1235	 44.62	+2	1304798..1304992	+	64	167039910	-	Teth514_1266	-	hypothetical protein
1236	 40.78	+1	1304993..1305583	+	196	167039911	-	Teth514_1267	-	hypothetical protein
1237	 41.04	+1	1305625..1308051	+	808	167039912	-	Teth514_1268	-	glycosyl hydrolase-like protein
1238	 36.01	0	1308133..1308543	+	136	167039913	-	Teth514_1269	-	toxin secretion/phage lysis holin
1239	 39.60	+1	1308540..1309241	+	233	167039914	-	Teth514_1270	-	N-acetylmuramoyl-L-alanine amidase
1240	 33.77	0	1309374..1309604	+	76	167039915	-	Teth514_1271	-	hypothetical protein
1241	 35.90	0	1309657..1311216	+	519	167039916	-	Teth514_1272	-	resolvase domain-containing protein
1242	 39.20	+1	1311213..1311638	+	141	167039917	-	Teth514_1273	-	recombinase
1243	 35.43	0	1311640..1313211	+	523	167039918	-	Teth514_1274	-	resolvase domain-containing protein
1244	 33.33	0	1313528..1313902	+	124	167039919	-	Teth514_1275	-	regulatory protein, ArsR
1245	 38.67	+1	1313916..1316276	+	786	167039920	-	Teth514_1276	-	heavy metal translocating P-type ATPase
1246	 32.26	0	1316363..1316827	+	154	167039921	-	Teth514_1277	-	lipoprotein signal peptidase
1247	 33.33	0	1316985..1317470	+	161	167039922	-	Teth514_1278	-	hypothetical protein
1248	 37.53	0	1317821..1318606	+	261	167039923	-	Teth514_1279	-	dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein
1249	 32.99	0	1318703..1319290	+	195	167039924	-	Teth514_1280	-	alkylhydroperoxidase
1250	 32.51	0	1319314..1320534	+	406	167039925	-	Teth514_1281	-	patatin
1251	 37.50	0	1320782..1320949	+	55	167039926	-	Teth514_1282	-	hypothetical protein
1252	 32.79	0	1321106..1321471	+	121	167039927	-	Teth514_1283	-	hypothetical protein
1253	 35.96	0	1321485..1322816	+	443	167039928	-	Teth514_1284	-	recombination factor protein RarA
1254	 34.62	0	1323124..1323825	-	233	167039929	-	Teth514_1285	-	phosphoenolpyruvate carboxykinase (ATP)
1255	 31.82	0	1324065..1324262	+	65	167039930	-	Teth514_1286	-	hypothetical protein
1256	 32.26	0	1324251..1324715	-	154	167039931	-	Teth514_1287	-	NUDIX hydrolase
1257	 34.03	0	1324803..1325660	+	285	167039932	-	Teth514_1288	-	RluA family pseudouridine synthase
1258	 33.00	0	1325652..1326548	-	298	167039933	-	Teth514_1289	-	radical SAM domain-containing protein
1259	 33.70	0	1326926..1328569	+	547	167039934	-	Teth514_1290	-	phosphoribulokinase/uridine kinase
1260	 36.79	0	1328614..1329018	+	134	167039935	-	Teth514_1291	-	hypothetical protein
1261	 32.05	0	1329297..1329452	+	51	167039936	-	Teth514_1292	-	hypothetical protein
1262	 35.72	0	1329596..1330936	+	446	167039937	-	Teth514_1293	-	radical SAM domain-containing protein
1263	 31.81	0	1330993..1331649	+	218	167039938	-	Teth514_1294	-	putative transcriptional regulator
1264	 39.15	+1	1331772..1331960	+	62	167039939	-	Teth514_1295	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1265	 32.89	0	1332331..1332558	+	75	167039940	-	Teth514_1296	-	small acid-soluble spore protein, alpha/beta type
1266	 33.59	0	1332666..1335026	+	786	167039941	-	Teth514_1297	-	peptidase S16, lon domain-containing protein
1267	 30.80	0	1335026..1336168	+	380	167039942	-	Teth514_1298	-	hypothetical protein
1268	 33.80	0	1336149..1336790	+	213	167039943	-	Teth514_1299	-	endonuclease III
1269	 31.78	0	1336889..1338364	+	491	167039944	-	Teth514_1300	-	VanW family protein
1270	 33.33	0	1338411..1338911	-	166	167039945	-	Teth514_1301	-	ferric uptake regulator family protein
1271	 29.82	-1	1339012..1339836	+	274	167039946	-	Teth514_1302	-	Cof-like hydrolase
1272	 38.83	+1	1339855..1340127	+	90	167039947	-	Teth514_1303	-	acylphosphatase
1273	 35.09	0	1341739..1342761	+	340	167039948	-	Teth514_1305	-	DeoR family transcriptional regulator
1274	 35.42	0	1342810..1343817	+	335	167039949	-	Teth514_1306	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1275	 38.16	0	1343884..1345065	+	393	167039950	-	Teth514_1307	-	phosphoglycerate kinase
1276	 38.55	+1	1345079..1345825	+	248	167039951	-	Teth514_1308	-	triosephosphate isomerase
1277	 36.25	0	1345838..1347382	+	514	167039952	-	Teth514_1309	-	phosphoglyceromutase
1278	 38.60	+1	1347409..1348698	+	429	167039953	-	Teth514_1310	-	phosphopyruvate hydratase
1279	 36.67	0	1348815..1349054	+	79	167039954	-	Teth514_1311	-	preprotein translocase subunit SecG
1280	 33.93	0	1349142..1350143	+	333	167039955	-	Teth514_1312	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1281	 31.15	0	1350292..1352079	+	595	167039956	-	Teth514_1313	-	DNA primase
1282	 37.80	0	1352111..1353184	+	357	167039957	-	Teth514_1314	-	RNA polymerase sigma factor RpoD
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.