IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1145	 37.43	0	1211592..1211762	+	56	167039820	-	Teth514_1175	-	hypothetical protein
1146	 35.21	0	1211909..1212814	+	301	167039821	-	Teth514_1176	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1147	 34.70	0	1212827..1213558	+	243	167039822	-	Teth514_1177	-	phosphotransferase domain-containing protein
1148	 33.45	0	1213564..1214418	+	284	167039823	-	Teth514_1178	-	hypothetical protein
1149	 35.69	0	1214420..1215394	+	324	167039824	-	Teth514_1179	-	protein of unknown function UPF0052 and CofD
1150	 34.66	0	1215581..1217161	+	526	167039825	-	Teth514_1180	-	alpha amylase, catalytic region
1151	 39.45	+1	1217218..1218459	+	413	167039826	-	Teth514_1181	-	extracellular solute-binding protein
1152	 34.64	0	1218506..1219426	+	306	167039827	-	Teth514_1182	-	binding-protein-dependent transport systems inner membrane component
1153	 36.69	0	1219428..1220321	+	297	167039828	-	Teth514_1183	-	binding-protein-dependent transport systems inner membrane component
1154	 31.82	0	1220444..1221433	+	329	167039829	-	Teth514_1184	-	hypothetical protein
1155	 34.17	0	1221430..1222506	+	358	167039830	-	Teth514_1185	-	hypothetical protein
1156	 32.46	0	1222606..1223406	+	266	167039831	-	Teth514_1186	-	hypothetical protein
1157	 33.97	0	1223420..1225144	+	574	167039832	-	Teth514_1187	-	alpha amylase, catalytic region
1158	 29.06	-1	1225237..1225470	+	77	167039833	-	Teth514_1188	-	hypothetical protein
1159	 30.83	0	1225577..1226533	+	318	167039834	-	Teth514_1189	-	hypothetical protein
1160	 37.45	0	1226533..1226799	+	88	167039835	-	Teth514_1190	-	phosphotransferase system, phosphocarrier protein HPr
1161	 34.79	0	1226850..1228157	+	435	167039836	-	Teth514_1191	-	DRTGG domain-containing protein
1162	 35.54	0	1228169..1231606	+	1145	167039837	-	Teth514_1192	-	DNA polymerase III DnaE
1163	 33.84	0	1231688..1231885	+	65	167039838	-	Teth514_1193	-	hypothetical protein
1164	 37.68	0	1231962..1232927	+	321	167039839	-	Teth514_1194	-	6-phosphofructokinase
1165	 36.59	0	1232950..1234701	+	583	167039840	-	Teth514_1195	-	pyruvate kinase., pyruvate, water dikinase
1166	 34.29	0	1234753..1235169	+	138	167039841	-	Teth514_1196	-	thioesterase superfamily protein
1167	 34.21	0	1235360..1236724	+	454	167039842	-	Teth514_1197	-	RNA methyltransferase
1168	 27.36	-1	1236861..1237781	+	306	167039843	-	Teth514_1198	-	auxin efflux carrier
1169	 32.96	0	1237795..1239147	-	450	167039844	-	Teth514_1199	-	MATE efflux family protein
1170	 33.49	0	1239475..1240113	+	212	167039845	-	Teth514_1200	-	TrkA domain-containing protein
1171	 34.41	0	1240219..1241331	+	370	167039846	-	Teth514_1201	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1172	 35.52	0	1241351..1241989	+	212	167039847	-	Teth514_1202	-	binding-protein-dependent transport systems inner membrane component
1173	 33.88	0	1242009..1242923	+	304	167039848	-	Teth514_1203	-	substrate-binding region of ABC-type glycine betaine transport system
1174	 34.74	0	1243072..1244634	+	520	167039849	-	Teth514_1204	-	putative alpha-isopropylmalate/homocitrate synthase family transferase
1175	 30.46	0	1244726..1245664	+	312	167039850	-	Teth514_1205	-	hypothetical protein
1176	 32.29	0	1245786..1247030	-	414	167039851	-	Teth514_1206	-	peptidase T
1177	 34.94	0	1247031..1247528	-	165	167039852	-	Teth514_1207	-	nitroreductase
1178	 34.14	0	1247707..1249062	+	451	167039853	-	Teth514_1208	-	glucose-6-phosphate isomerase
1179	 36.96	0	1249108..1250733	-	541	167039854	-	Teth514_1209	-	alpha-glucan phosphorylase
1180	 35.42	0	1251401..1252312	+	303	167039855	-	Teth514_1210	-	methylenetetrahydrofolate reductase
1181	 35.89	0	1252326..1254749	+	807	167039856	-	Teth514_1211	-	homocysteine S-methyltransferase
1182	 33.55	0	1254763..1255218	+	151	167039857	-	Teth514_1212	-	YbaK/prolyl-tRNA synthetase associated region
1183	 37.35	0	1255235..1255807	-	190	167039858	-	Teth514_1213	-	manganese containing catalase
1184	 35.27	0	1255821..1256078	-	85	167039859	-	Teth514_1214	-	hypothetical protein
1185	 38.51	+1	1256083..1256256	-	57	167039860	-	Teth514_1215	-	hypothetical protein
1186	 33.19	0	1256464..1257822	+	452	167039861	-	Teth514_1216	-	RNA methyltransferase
1187	 39.56	+1	1258025..1258924	-	299	167039862	-	Teth514_1217	-	hypothetical protein
1188	 37.61	0	1258950..1261922	-	990	167039863	-	Teth514_1218	-	hypothetical protein
1189	 32.19	0	1261942..1262727	-	261	167039864	-	Teth514_1219	-	hypothetical protein
1190	 40.26	+1	1262714..1263175	-	153	167039865	-	Teth514_1220	-	hypothetical protein
1191	 36.71	0	1263177..1264568	-	463	167039866	-	Teth514_1221	-	restriction modification system DNA specificity subunit
1192	 37.79	0	1264573..1266231	-	552	167039867	-	Teth514_1222	-	N-6 DNA methylase
1193	 39.23	+1	1266500..1267432	+	310	167039868	-	Teth514_1223	-	transposase, IS111A/IS1328/IS1533
1194	 38.89	+1	1267486..1267737	+	83	167039869	-	Teth514_1224	-	hypothetical protein
1195	 37.14	0	1267858..1268067	-	69	167039870	-	Teth514_1225	-	hypothetical protein
1196	 38.60	+1	1268119..1268346	-	75	167039871	-	Teth514_1226	-	DNA binding domain-containing protein
1197	 33.45	0	1268355..1270133	-	592	167039872	-	Teth514_1227	-	hypothetical protein
1198	 34.22	0	1270138..1270587	-	149	167039873	-	Teth514_1228	-	hypothetical protein
1199	 35.89	0	1270580..1271596	-	338	167039874	-	Teth514_1229	-	hypothetical protein
1200	 41.41	+1	1272255..1272749	+	164	167039875	-	Teth514_1230	-	ECF subfamily RNA polymerase sigma-24 factor
1201	 40.57	+1	1273069..1273386	+	105	167039876	-	Teth514_1231	-	hypothetical protein
1202	 41.31	+1	1273383..1274510	+	375	167039877	-	Teth514_1232	-	hypothetical protein
1203	 38.32	0	1274516..1275076	+	186	167039878	-	Teth514_1233	-	hypothetical protein
1204	 41.50	+1	1275073..1277007	+	644	167039879	-	Teth514_1234	-	DNA-directed DNA polymerase
1205	 39.65	+1	1277094..1277885	+	263	167039880	-	Teth514_1235	-	prophage antirepressor
1206	 40.24	+1	1277889..1278308	+	139	167039881	-	Teth514_1236	-	hypothetical protein
1207	 41.30	+1	1278305..1280650	+	781	167039882	-	Teth514_1237	-	virulence-associated E family protein
1208	 37.59	0	1280908..1281189	+	93	167039883	-	Teth514_1238	-	hypothetical protein
1209	 39.93	+1	1281170..1282519	+	449	167039884	-	Teth514_1239	-	SNF2-related protein
1210	 40.09	+1	1282524..1282982	+	152	167039885	-	Teth514_1240	-	hypothetical protein
1211	 47.50	+2	1283102..1283461	+	119	167039886	-	Teth514_1241	-	HNH endonuclease
1212	 42.75	+2	1283573..1284124	+	183	167039887	-	Teth514_1242	-	hypothetical protein
1213	 39.12	+1	1284142..1285317	+	391	167039888	-	Teth514_1243	-	S-adenosylmethionine synthetase
1214	 41.00	+1	1285298..1286536	+	412	167039889	-	Teth514_1244	-	DNA methylase N-4/N-6 domain-containing protein
1215	 46.18	+2	1287128..1288411	+	427	167039890	-	Teth514_1245	-	RNA-directed DNA polymerase (Reverse transcriptase)
1216	 40.72	+1	1288563..1289252	+	229	167039891	-	Teth514_1246	-	hypothetical protein
1217	 42.54	+2	1289252..1289479	+	75	167039892	-	Teth514_1247	-	hypothetical protein
1218	 41.44	+1	1289615..1290514	+	299	167039893	-	Teth514_1248	-	hypothetical protein
1219	 43.07	+2	1290552..1291013	+	153	167039894	-	Teth514_1249	-	hypothetical protein
1220	 32.26	0	1290998..1291183	+	61	167039895	-	Teth514_1250	-	hypothetical protein
1221	 41.92	+1	1291248..1292855	+	535	167039896	-	Teth514_1251	-	phage terminase
1222	 42.44	+2	1292868..1294130	+	420	167039897	-	Teth514_1252	-	HK97 family phage portal protein
1223	 41.56	+1	1294127..1294807	+	226	167039898	-	Teth514_1253	-	peptidase S14, ClpP
1224	 43.00	+2	1294819..1296018	+	399	167039899	-	Teth514_1254	-	HK97 family phage major capsid protein
1225	 44.29	+2	1296034..1296252	+	72	167039900	-	Teth514_1255	-	hypothetical protein
1226	 41.10	+1	1296272..1296580	+	102	167039901	-	Teth514_1256	-	uncharacterized phage protein
1227	 39.29	+1	1296584..1296919	+	111	167039902	-	Teth514_1257	-	phage head-tail adaptor, putative
1228	 39.58	+1	1296912..1297343	+	143	167039903	-	Teth514_1258	-	HK97 family phage protein
1229	 35.03	0	1297340..1297693	+	117	167039904	-	Teth514_1259	-	hypothetical protein
1230	 43.45	+2	1297697..1298299	+	200	167039905	-	Teth514_1260	-	phi13 family phage major tail protein
1231	 39.58	+1	1298312..1298695	+	127	167039906	-	Teth514_1261	-	hypothetical protein
1232	 39.90	+1	1298910..1301468	+	852	167039907	-	Teth514_1263	-	phage tape measure protein
1233	 40.05	+1	1301482..1302255	+	257	167039908	-	Teth514_1264	-	phage putative tail component
1234	 39.48	+1	1302260..1304782	+	840	167039909	-	Teth514_1265	-	phage minor structural protein
1235	 44.62	+2	1304798..1304992	+	64	167039910	-	Teth514_1266	-	hypothetical protein
1236	 40.78	+1	1304993..1305583	+	196	167039911	-	Teth514_1267	-	hypothetical protein
1237	 41.04	+1	1305625..1308051	+	808	167039912	-	Teth514_1268	-	glycosyl hydrolase-like protein
1238	 36.01	0	1308133..1308543	+	136	167039913	-	Teth514_1269	-	toxin secretion/phage lysis holin
1239	 39.60	+1	1308540..1309241	+	233	167039914	-	Teth514_1270	-	N-acetylmuramoyl-L-alanine amidase
1240	 33.77	0	1309374..1309604	+	76	167039915	-	Teth514_1271	-	hypothetical protein
1241	 35.90	0	1309657..1311216	+	519	167039916	-	Teth514_1272	-	resolvase domain-containing protein
1242	 39.20	+1	1311213..1311638	+	141	167039917	-	Teth514_1273	-	recombinase
1243	 35.43	0	1311640..1313211	+	523	167039918	-	Teth514_1274	-	resolvase domain-containing protein
1244	 33.33	0	1313528..1313902	+	124	167039919	-	Teth514_1275	-	regulatory protein, ArsR
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.