IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.39   STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
67	 31.51	0	71777..72598	+	273	167038742	-	Teth514_0069	-	dimethyladenosine transferase
68	 34.56	0	72668..73726	+	352	167038743	-	Teth514_0070	-	hypothetical protein
69	 27.85	-1	73766..74002	-	78	167038744	-	Teth514_0071	-	hypothetical protein
70	 28.06	-1	74138..74725	-	195	167038745	-	Teth514_0072	-	hypothetical protein
71	 25.18	-2	74898..75890	-	330	167038746	-	Teth514_0073	-	hypothetical protein
72	 29.38	-1	75887..76543	-	218	167038747	-	Teth514_0074	-	putative RNA polymerase sigma factor SigI
73	 36.21	0	76604..77716	+	370	167038748	-	Teth514_0075	-	hypothetical protein
74	 32.77	0	77740..78096	-	118	167038749	-	Teth514_0076	-	hypothetical protein
75	 26.20	-2	78237..78755	+	172	167038750	-	Teth514_0077	-	hypothetical protein
76	 35.64	0	78756..80228	+	490	167038751	-	Teth514_0078	-	microtubule-severing ATPase
77	 36.11	0	80677..82008	+	443	167038752	-	Teth514_0079	-	electron transport complex, RnfABCDGE type, C subunit
78	 35.12	0	82024..83031	+	335	167038753	-	Teth514_0080	-	electron transport complex, RnfABCDGE type, D subunit
79	 32.47	0	83032..83613	+	193	167038754	-	Teth514_0081	-	electron transport complex, RnfABCDGE type, G subunit
80	 33.79	0	83636..84286	+	216	167038755	-	Teth514_0082	-	electron transport complex, RnfABCDGE type, E subunit
81	 29.67	-1	84261..84833	+	190	167038756	-	Teth514_0083	-	electron transport complex, RnfABCDGE type, A subunit
82	 35.29	0	84845..85660	+	271	167038757	-	Teth514_0084	-	electron transport complex, RnfABCDGE type, B subunit
83	 30.26	-1	85739..86161	+	140	167038758	-	Teth514_0085	-	hypothetical protein
84	 28.83	-1	86194..86304	+	36	167038759	-	Teth514_0086	-	hypothetical protein
85	 29.63	-1	86413..86763	+	116	167038760	-	Teth514_0087	-	response regulator receiver protein
86	 37.91	0	86888..87739	+	283	167038761	-	Teth514_0088	-	putative aldolase
87	 35.17	0	88046..89572	+	508	167038762	-	Teth514_0089	-	transcription termination factor Rho
88	 34.76	0	89635..89844	+	69	167038763	-	Teth514_0090	-	50S ribosomal protein L31
89	 38.32	0	89913..90494	+	193	167038764	-	Teth514_0091	-	thymidine kinase
90	 32.04	0	90510..91436	+	308	167038765	-	Teth514_0092	-	hypothetical protein
91	 33.21	0	91423..92262	+	279	167038766	-	Teth514_0093	-	HemK family modification methylase
92	 35.85	0	92311..93381	+	356	167038767	-	Teth514_0094	-	peptide chain release factor 1
93	 38.06	0	93713..94432	+	239	167038768	-	Teth514_0095	-	zinc/iron permease
94	 35.77	0	94460..95524	+	354	167038769	-	Teth514_0096	-	Sua5/YciO/YrdC/YwlC family protein
95	 36.36	0	95521..95982	+	153	167038770	-	Teth514_0097	-	protein tyrosine phosphatase
96	 40.27	+1	95979..96425	+	148	167038771	-	Teth514_0098	-	RpiB/LacA/LacB family sugar-phosphate isomerase
97	 39.02	+1	96475..97107	+	210	167038772	-	Teth514_0099	-	uracil phosphoribosyltransferase
98	 39.56	+1	97125..97574	+	149	167038773	-	Teth514_0100	-	CMP/dCMP deaminase, zinc-binding
99	 40.74	+1	97608..97904	-	98	167038774	-	Teth514_0101	-	hypothetical protein
100	 27.60	-1	98253..99002	+	249	167038775	-	Teth514_0102	-	hypothetical protein
101	 37.41	0	99009..100259	+	416	167038776	-	Teth514_0103	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
102	 38.04	0	100427..101551	+	374	167038777	-	Teth514_0104	-	alanine dehydrogenase
103	 32.04	0	101675..103378	+	567	167038778	-	Teth514_0105	-	pyruvate phosphate dikinase, PEP/pyruvate-binding
104	 32.38	0	103744..104787	+	347	167038779	-	Teth514_0106	-	SpoIID/LytB domain-containing protein
105	 31.54	0	104855..105691	+	278	167038780	-	Teth514_0107	-	peptidase M23B
106	 31.03	0	105823..106083	+	86	167038781	-	Teth514_0108	-	regulatory protein, DeoR
107	 38.66	+1	106215..107246	+	343	167038782	-	Teth514_0109	-	cell shape determining protein MreB
108	 34.52	0	107259..108014	+	251	167038783	-	Teth514_0110	-	flagellar basal body rod protein
109	 38.45	+1	108030..108830	+	266	167038784	-	Teth514_0111	-	hypothetical protein
110	 31.85	0	108856..109191	+	111	167038785	-	Teth514_0112	-	rod binding protein-like protein
111	 34.73	0	109583..110011	+	142	167038786	-	Teth514_0113	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
112	 33.08	0	110024..111589	+	521	167038787	-	Teth514_0114	-	integral membrane protein MviN
113	 36.82	0	111610..112728	+	372	167038788	-	Teth514_0115	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
114	 28.93	-1	112821..112979	+	52	167038789	-	Teth514_0116	-	hypothetical protein
115	 36.16	0	112995..113807	+	270	167038790	-	Teth514_0117	-	hypothetical protein
116	 28.63	-1	113958..114191	+	77	167038791	-	Teth514_0118	-	prevent-host-death family protein
117	 26.14	-2	114247..114663	+	138	167038792	-	Teth514_0119	-	hypothetical protein
118	 33.57	0	114840..117773	+	977	167038793	-	Teth514_0120	-	sigma-54 factor interaction domain-containing protein
119	 27.43	-1	117828..118301	+	157	167038794	-	Teth514_0121	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
120	 35.17	0	118767..119093	+	108	167038795	-	Teth514_0122	-	response regulator receiver protein
121	 35.87	0	119096..120475	+	459	167038796	-	Teth514_0123	-	PTS system galactitol-specific IIC component
122	 33.23	0	120618..121577	+	319	167038797	-	Teth514_0124	-	phosphoglycerate dehydrogenase
123	 32.30	0	121611..121901	+	96	167038798	-	Teth514_0125	-	SAF domain-containing protein
124	 32.91	0	121898..123067	+	389	167038799	-	Teth514_0126	-	Altronate dehydratase
125	 36.21	0	123159..124304	+	381	167038800	-	Teth514_0127	-	mandelate racemase/muconate lactonizing protein
126	 38.01	0	124393..125355	+	320	167038801	-	Teth514_0128	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
127	 36.27	0	125375..126022	+	215	167038802	-	Teth514_0129	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
128	 31.66	0	126060..127256	+	398	167038803	-	Teth514_0130	-	major facilitator transporter
129	 30.97	0	127375..130122	+	915	167038804	-	Teth514_0131	-	sigma-54 factor interaction domain-containing protein
130	 32.12	0	130293..130703	+	136	167038805	-	Teth514_0132	-	PTS system fructose subfamily IIA component
131	 35.13	0	130933..131712	+	259	167038806	-	Teth514_0133	-	phosphotransferase system PTS, sorbose-specific IIC subunit
132	 35.47	0	131731..132618	+	295	167038807	-	Teth514_0134	-	PTS system mannose/fructose/sorbose family IID component
133	 30.94	0	132737..133237	+	166	167038808	-	Teth514_0135	-	PTS system sorbose subfamily IIB component
134	 31.05	0	133361..134323	+	320	167038809	-	Teth514_0136	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
135	 32.86	0	134353..134985	+	210	167038810	-	Teth514_0137	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
136	 37.60	0	135112..136119	+	335	167038811	-	Teth514_0138	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
137	 31.28	0	136314..137723	+	469	167038812	-	Teth514_0139	-	6-phosphogluconate dehydrogenase
138	 34.52	0	137878..139221	+	447	167038813	-	Teth514_0140	-	TrkH family potassium uptake protein
139	 35.63	0	139236..139889	+	217	167038814	-	Teth514_0141	-	TrkA domain-containing protein
140	 35.52	0	140562..141293	+	243	167038815	-	Teth514_0143	-	hypothetical protein
141	 45.41	+2	141317..141871	+	184	167038816	-	Teth514_0144	-	nitroreductase
142	 43.55	+2	141920..143074	-	384	167038817	-	Teth514_0145	-	iron-containing alcohol dehydrogenase
143	 42.54	+2	143109..145073	-	654	167038818	-	Teth514_0146	-	NADH:flavin oxidoreductase/NADH oxidase
144	 37.04	0	145277..146167	+	296	167038819	-	Teth514_0147	-	LysR family transcriptional regulator
145	 46.96	+2	146444..146854	-	136	167038820	-	Teth514_0148	-	transposase IS116/IS110/IS902 family protein
146	 32.91	0	147881..148597	+	238	167038821	-	Teth514_0150	-	hypothetical protein
147	 32.04	0	148584..149123	+	179	167038822	-	Teth514_0151	-	hypothetical protein
148	 36.52	0	150618..151934	+	438	167038823	-	Teth514_0153	-	xylose isomerase
149	 36.66	0	151949..153451	+	500	167038824	-	Teth514_0154	-	xylulokinase
150	 34.24	0	153538..154644	+	368	167038825	-	Teth514_0155	-	D-xylose ABC transporter, periplasmic substrate-binding protein
151	 37.37	0	155103..156515	+	470	167038826	-	Teth514_0156	-	RNA-directed DNA polymerase (Reverse transcriptase)
152	 29.40	-1	156614..158137	+	507	167038827	-	Teth514_0157	-	ABC transporter related
153	 32.90	0	158137..159303	+	388	167038828	-	Teth514_0158	-	monosaccharide-transporting ATPase
154	 32.92	0	159361..160563	+	400	167038829	-	Teth514_0159	-	ROK family protein
155	 30.28	-1	160581..161498	+	305	167038830	-	Teth514_0160	-	oxidoreductase domain-containing protein
156	 33.53	0	161657..162667	+	336	167038831	-	Teth514_0161	-	periplasmic binding protein/LacI transcriptional regulator
157	 34.52	0	162683..163612	+	309	167038832	-	Teth514_0162	-	ribokinase
158	 31.55	0	163609..164001	+	130	167038833	-	Teth514_0163	-	D-ribose pyranase
159	 31.05	0	164025..165515	+	496	167038834	-	Teth514_0164	-	ABC transporter related
160	 34.48	0	165517..166473	+	318	167038835	-	Teth514_0165	-	monosaccharide-transporting ATPase
161	 34.74	0	166556..167479	+	307	167038836	-	Teth514_0166	-	monosaccharide-transporting ATPase
162	 37.15	0	167982..169394	+	470	167038837	-	Teth514_0167	-	RNA-directed DNA polymerase (Reverse transcriptase)
163	 31.79	0	170094..170936	+	280	167038838	-	Teth514_0168	-	RpiR family transcriptional regulator
164	 32.71	0	170950..171432	+	160	167038839	-	Teth514_0169	-	PTS system, glucose subfamily, IIA subunit
165	 35.64	0	171527..172957	+	476	167038840	-	Teth514_0170	-	phosphotransferase system, EIIC
166	 30.02	-1	173006..174091	+	361	167038841	-	Teth514_0171	-	hypothetical protein
34.39	MEAN

3.95	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.