IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1039	 30.25	-1	1101800..1101961	+	53	167039714	-	Teth514_1064	-	hypothetical protein
1040	 36.25	0	1102062..1103468	+	468	167039715	-	Teth514_1065	-	hypothetical protein
1041	 32.34	0	1103519..1104520	+	333	167039716	-	Teth514_1066	-	radical SAM domain-containing protein
1042	 25.00	-2	1104659..1104886	+	75	167039717	-	Teth514_1067	-	hypothetical protein
1043	 32.74	0	1104955..1105293	+	112	167039718	-	Teth514_1068	-	hypothetical protein
1044	 27.13	-1	1105435..1105869	+	144	167039719	-	Teth514_1069	-	hypothetical protein
1045	 34.01	0	1106352..1106945	+	197	167039720	-	Teth514_1070	-	resolvase domain-containing protein
1046	 33.40	0	1106926..1108362	+	478	167039721	-	Teth514_1071	-	transposase, putative
1047	 35.75	0	1108512..1109504	+	330	167039722	-	Teth514_1072	-	periplasmic binding protein/LacI transcriptional regulator
1048	 39.30	+1	1109562..1110650	+	362	167039723	-	Teth514_1073	-	oxidoreductase domain-containing protein
1049	 35.71	0	1110665..1111714	+	349	167039724	-	Teth514_1074	-	oxidoreductase domain-containing protein
1050	 32.53	0	1111732..1112481	+	249	167039725	-	Teth514_1075	-	xylose isomerase domain-containing protein
1051	 36.46	0	1112482..1113408	+	308	167039726	-	Teth514_1076	-	xylose isomerase domain-containing protein
1052	 31.05	0	1113516..1114436	+	306	167039727	-	Teth514_1077	-	auxin efflux carrier
1053	 36.63	0	1114459..1115430	+	323	167039728	-	Teth514_1078	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1054	 33.47	0	1115672..1116427	+	251	167039729	-	Teth514_1079	-	DeoR family transcriptional regulator
1055	 36.08	0	1116466..1117047	+	193	167039730	-	Teth514_1080	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1056	 34.68	0	1117098..1118504	+	468	167039731	-	Teth514_1081	-	6-phosphogluconate dehydrogenase
1057	 35.56	0	1118613..1118792	+	59	167039732	-	Teth514_1082	-	hypothetical protein
1058	 34.71	0	1119177..1120697	+	506	167039733	-	Teth514_1084	-	carbohydrate kinase, FGGY
1059	 31.11	0	1120759..1121118	-	119	167039734	-	Teth514_1085	-	hypothetical protein
1060	 35.36	0	1121428..1123005	+	525	167039735	-	Teth514_1086	-	galactose-1-phosphate uridylyltransferase
1061	 34.71	0	1123002..1124165	+	387	167039736	-	Teth514_1087	-	galactokinase
1062	 40.20	+1	1124179..1125168	+	329	167039737	-	Teth514_1088	-	UDP-glucose 4-epimerase
1063	 35.77	0	1125183..1126373	+	396	167039738	-	Teth514_1089	-	ROK family protein
1064	 35.32	0	1126465..1127370	+	301	167039739	-	Teth514_1090	-	hypothetical protein
1065	 32.95	0	1127810..1129111	+	433	167039740	-	Teth514_1091	-	extracellular solute-binding protein
1066	 31.74	0	1129236..1130111	+	291	167039741	-	Teth514_1092	-	binding-protein-dependent transport systems inner membrane component
1067	 29.52	-1	1130108..1130920	+	270	167039742	-	Teth514_1093	-	binding-protein-dependent transport systems inner membrane component
1068	 34.29	0	1131026..1133227	+	733	167039743	-	Teth514_1094	-	glycoside hydrolase, clan GH-D
1069	 33.42	0	1133220..1135451	+	743	167039744	-	Teth514_1095	-	Beta-galactosidase
1070	 29.28	-1	1135658..1138792	+	1044	167039745	-	Teth514_1096	-	Alpha-mannosidase
1071	 26.50	-1	1138893..1139477	+	194	167039746	-	Teth514_1097	-	hypothetical protein
1072	 31.21	0	1139798..1139938	+	46	167039747	-	Teth514_1098	-	hypothetical protein
1073	 37.70	0	1140141..1141514	+	457	167039748	-	Teth514_1099	-	extracellular solute-binding protein
1074	 32.12	0	1141598..1142500	+	300	167039749	-	Teth514_1100	-	binding-protein-dependent transport systems inner membrane component
1075	 31.08	0	1142525..1143367	+	280	167039750	-	Teth514_1101	-	binding-protein-dependent transport systems inner membrane component
1076	 34.87	0	1143493..1143948	+	151	167039751	-	Teth514_1102	-	Alpha-mannosidase-like protein
1077	 27.65	-1	1144086..1144982	+	298	167039752	-	Teth514_1103	-	helix-turn-helix domain-containing protein
1078	 35.33	0	1145200..1146099	-	299	167039753	-	Teth514_1104	-	acetamidase/formamidase
1079	 39.21	+1	1146694..1148055	+	453	167039754	-	Teth514_1105	-	sodium:neurotransmitter symporter
1080	 34.08	0	1148212..1149012	-	266	167039755	-	Teth514_1106	-	AAA ATPase
1081	 34.77	0	1149030..1150355	-	441	167039756	-	Teth514_1107	-	integrase catalytic subunit
1082	 32.99	0	1150492..1151073	-	193	167039757	-	Teth514_1108	-	hypothetical protein
1083	 29.51	-1	1151639..1152946	+	435	167039758	-	Teth514_1109	-	hypothetical protein
1084	 35.64	0	1153067..1153717	+	216	167039759	-	Teth514_1110	-	putative translaldolase
1085	 31.27	0	1153814..1155121	+	435	167039760	-	Teth514_1111	-	extracellular solute-binding protein
1086	 35.62	0	1155145..1156806	-	553	167039761	-	Teth514_1112	-	peptidoglycan glycosyltransferase
1087	 27.56	-1	1157152..1157463	+	103	167039762	-	Teth514_1113	-	hypothetical protein
1088	 32.39	0	1157447..1157659	+	70	167039763	-	Teth514_1114	-	hypothetical protein
1089	 36.36	0	1157978..1159297	+	439	167039764	-	Teth514_1115	-	extracellular solute-binding protein
1090	 32.32	0	1159372..1160262	+	296	167039765	-	Teth514_1116	-	binding-protein-dependent transport systems inner membrane component
1091	 32.00	0	1160262..1161089	+	275	167039766	-	Teth514_1117	-	binding-protein-dependent transport systems inner membrane component
1092	 31.71	0	1161109..1162584	+	491	167039767	-	Teth514_1118	-	sucrose-6-phosphate hydrolase
1093	 33.23	0	1162651..1163619	+	322	167039768	-	Teth514_1119	-	ribokinase-like domain-containing protein
1094	 32.00	0	1163707..1164681	+	324	167039769	-	Teth514_1120	-	regulatory protein, LacI
1095	 35.10	0	1164825..1165901	+	358	167039770	-	Teth514_1121	-	hypothetical protein
1096	 32.58	0	1166014..1166145	+	43	167039771	-	Teth514_1122	-	hypothetical protein
1097	 35.45	0	1166173..1166598	+	141	167039772	-	Teth514_1123	-	hypothetical protein
1098	 32.38	0	1166615..1167244	-	209	167039773	-	Teth514_1124	-	methyltransferase type 11
1099	 38.89	+1	1167573..1167932	+	119	167039774	-	Teth514_1125	-	hypothetical protein
1100	 37.47	0	1168127..1168489	+	120	167039775	-	Teth514_1126	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1101	 36.87	0	1168504..1169352	+	282	167039776	-	Teth514_1127	-	cobyrinic acid a,c-diamide synthase
1102	 37.56	0	1169349..1170224	+	291	167039777	-	Teth514_1128	-	cobyrinic acid a,c-diamide synthase
1103	 30.16	-1	1170308..1171126	+	272	167039778	-	Teth514_1129	-	beta-lactamase domain-containing protein
1104	 32.86	0	1171258..1172316	-	352	167039779	-	Teth514_1130	-	biotin synthase
1105	 35.20	0	1172508..1173848	+	446	167039780	-	Teth514_1131	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1106	 33.42	0	1174020..1175156	+	378	167039781	-	Teth514_1132	-	periplasmic binding protein
1107	 37.09	0	1175218..1176282	+	354	167039782	-	Teth514_1133	-	transport system permease protein
1108	 32.40	0	1176279..1177031	+	250	167039783	-	Teth514_1134	-	ABC transporter related
1109	 37.89	0	1177055..1177471	+	138	167039784	-	Teth514_1135	-	hypothetical protein
1110	 31.34	0	1178070..1178672	+	200	167039785	-	Teth514_1137	-	hypothetical protein
1111	 36.21	0	1179190..1179432	+	80	167039786	-	Teth514_1138	-	FeoA family protein
1112	 38.68	+1	1179434..1179676	+	80	167039787	-	Teth514_1139	-	FeoA family protein
1113	 35.83	0	1179691..1181733	+	680	167039788	-	Teth514_1140	-	ferrous iron transport protein B
1114	 36.36	0	1181978..1182571	+	197	167039789	-	Teth514_1141	-	metal dependent phosphohydrolase
1115	 25.74	-2	1182640..1183113	+	157	167039790	-	Teth514_1142	-	ferric uptake regulator family protein
1116	 35.16	0	1183623..1185701	+	692	167039791	-	Teth514_1144	-	anaerobic ribonucleoside triphosphate reductase
1117	 29.26	-1	1185698..1186384	+	228	167039792	-	Teth514_1145	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1118	 31.83	0	1186577..1189306	+	909	167039793	-	Teth514_1146	-	diguanylate cyclase and metal dependent phosphohydrolase
1119	 38.01	0	1189374..1189715	+	113	167039794	-	Teth514_1147	-	hypothetical protein
1120	 33.18	0	1189832..1190467	+	211	167039795	-	Teth514_1148	-	hypothetical protein
1121	 34.67	0	1190556..1190780	+	74	167039796	-	Teth514_1149	-	copper ion binding protein
1122	 36.63	0	1191317..1192255	+	312	167039797	-	Teth514_1150	-	cysteine synthase A
1123	 43.86	+2	1192287..1192400	+	37	167039798	-	Teth514_1151	-	hypothetical protein
1124	 31.07	0	1192523..1192699	-	58	167039799	-	Teth514_1152	-	hypothetical protein
1125	 32.98	0	1193020..1193304	-	94	167039800	-	Teth514_1153	-	hypothetical protein
1126	 28.24	-1	1193336..1193551	-	71	167039801	-	Teth514_1154	-	hypothetical protein
1127	 33.19	0	1193764..1194459	+	231	167039802	-	Teth514_1155	-	two component transcriptional regulator
1128	 31.05	0	1194452..1195807	+	451	167039803	-	Teth514_1156	-	integral membrane sensor signal transduction histidine kinase
1129	 33.99	0	1196081..1196686	-	201	167039804	-	Teth514_1158	-	thiamine biosynthesis protein ThiF
1130	 33.44	0	1196800..1197702	-	300	167039805	-	Teth514_1159	-	PP-loop domain-containing protein
1131	 28.72	-1	1197722..1197916	-	64	167039806	-	Teth514_1160	-	thiamineS protein
1132	 32.51	0	1198154..1198519	+	121	167039807	-	Teth514_1161	-	regulatory protein, ArsR
1133	 35.56	0	1198539..1200515	+	658	167039808	-	Teth514_1162	-	heavy metal translocating P-type ATPase
1134	 35.11	0	1200553..1200777	+	74	167039809	-	Teth514_1163	-	copper ion binding protein
1135	 35.50	0	1201145..1202299	+	384	167039810	-	Teth514_1164	-	cysteine desulfurase
1136	 36.67	0	1202456..1203715	-	419	167039811	-	Teth514_1165	-	transposase IS116/IS110/IS902 family protein
1137	 37.22	0	1204122..1205150	+	342	167039812	-	Teth514_1166	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1138	 35.00	0	1205293..1205592	+	99	167039813	-	Teth514_1167	-	response regulator receiver protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.