IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
957	 34.38	0	1002214..1010877	+	2887	167039632	-	Teth514_0980	-	putative carbohydrate binding
958	 33.64	0	1011318..1012295	+	325	167039633	-	Teth514_0981	-	ABC transporter related
959	 32.49	0	1012261..1012968	+	235	167039634	-	Teth514_0982	-	ABC-2 type transporter
960	 34.41	0	1012980..1014368	+	462	167039635	-	Teth514_0983	-	ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like protein
961	 28.57	-1	1014365..1015267	+	300	167039636	-	Teth514_0984	-	hypothetical protein
962	 32.55	0	1015995..1017014	+	339	167039637	-	Teth514_0985	-	periplasmic binding protein/LacI transcriptional regulator
963	 34.43	0	1017073..1017894	+	273	167039638	-	Teth514_0986	-	xylose isomerase domain-containing protein
964	 36.56	0	1017920..1019098	+	392	167039639	-	Teth514_0987	-	ABC-type sugar transport system periplasmic component-like protein
965	 36.06	0	1019227..1020399	+	390	167039640	-	Teth514_0988	-	oxidoreductase domain-containing protein
966	 30.60	0	1020488..1021987	+	499	167039641	-	Teth514_0989	-	ABC transporter related
967	 35.37	0	1021971..1022951	+	326	167039642	-	Teth514_0990	-	monosaccharide-transporting ATPase
968	 31.91	0	1022996..1023910	+	304	167039643	-	Teth514_0991	-	xylose isomerase domain-containing protein
969	 39.40	+1	1023990..1024928	+	312	167039644	-	Teth514_0992	-	ROK family glucokinase
970	 32.64	0	1024956..1026113	+	385	167039645	-	Teth514_0993	-	oxidoreductase domain-containing protein
971	 32.65	0	1028275..1028568	-	97	167039646	-	Teth514_0996	-	HEPN domain-containing protein
972	 33.91	0	1028552..1028899	-	115	167039647	-	Teth514_0997	-	DNA polymerase beta subunit
973	 34.21	0	1029044..1029616	-	190	167039648	-	Teth514_0998	-	hypothetical protein
974	 32.90	0	1029956..1031098	+	380	167039649	-	Teth514_0999	-	histidine--tRNA ligase
975	 34.11	0	1031100..1031741	+	213	167039650	-	Teth514_1000	-	ATP phosphoribosyltransferase catalytic subunit
976	 36.84	0	1031743..1033026	+	427	167039651	-	Teth514_1001	-	histidinol dehydrogenase
977	 32.39	0	1033028..1034083	+	351	167039652	-	Teth514_1002	-	histidinol-phosphate aminotransferase
978	 37.26	0	1034080..1034664	+	194	167039653	-	Teth514_1003	-	imidazoleglycerol-phosphate dehydratase
979	 34.31	0	1034726..1035337	+	203	167039654	-	Teth514_1004	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
980	 32.34	0	1035328..1036035	+	235	167039655	-	Teth514_1005	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
981	 38.19	0	1036036..1036797	+	253	167039656	-	Teth514_1006	-	imidazoleglycerol phosphate synthase, cyclase subunit
982	 33.94	0	1036820..1037479	+	219	167039657	-	Teth514_1007	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
983	 38.57	+1	1037512..1038753	-	413	167039658	-	Teth514_1008	-	serine hydroxymethyltransferase
984	 33.65	0	1039083..1040018	-	311	167039659	-	Teth514_1009	-	membrane dipeptidase
985	 34.96	0	1040156..1041565	+	469	167039660	-	Teth514_1010	-	LmbE family protein
986	 28.82	-1	1041578..1042663	-	361	167039661	-	Teth514_1011	-	spore germination protein
987	 31.28	0	1042718..1043644	-	308	167039662	-	Teth514_1012	-	Na+/Pi-cotransporter
988	 32.22	0	1043772..1046102	+	776	167039663	-	Teth514_1013	-	nucleotidyl transferase
989	 25.45	-2	1046267..1046545	+	92	167039664	-	Teth514_1014	-	hypothetical protein
990	 28.52	-1	1046542..1047102	+	186	167039665	-	Teth514_1015	-	CRISPR-associated Cas4 family protein
991	 35.48	0	1047175..1048059	+	294	167039666	-	Teth514_1016	-	polysaccharide deacetylase
992	 22.44	-2	1048056..1048211	+	51	167039667	-	Teth514_1017	-	hypothetical protein
993	 35.79	0	1048343..1048912	+	189	167039668	-	Teth514_1018	-	glycerol-3-phosphate responsive antiterminator
994	 41.02	+1	1048994..1049722	+	242	167039669	-	Teth514_1019	-	MIP family channel protein
995	 38.69	+1	1049795..1051288	+	497	167039670	-	Teth514_1020	-	glycerol kinase
996	 35.40	0	1051457..1052959	+	500	167039671	-	Teth514_1021	-	FAD dependent oxidoreductase
997	 37.22	0	1052952..1054211	+	419	167039672	-	Teth514_1022	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
998	 36.89	0	1054213..1054578	+	121	167039673	-	Teth514_1023	-	hypothetical protein
999	 33.27	0	1054598..1056232	+	544	167039674	-	Teth514_1024	-	sigma-54 dependent trancsriptional regulator
1000	 39.24	+1	1056650..1057648	+	332	167039675	-	Teth514_1025	-	dihydroxyacetone kinase, DhaK subunit
1001	 36.31	0	1057667..1058305	+	212	167039676	-	Teth514_1026	-	dihydroxyacetone kinase, L subunit
1002	 39.44	+1	1058320..1058712	+	130	167039677	-	Teth514_1027	-	dihydroxyacetone kinase, phosphotransfer subunit
1003	 27.71	-1	1058911..1060761	+	616	167039678	-	Teth514_1028	-	beta-lactamase domain-containing protein
1004	 33.33	0	1060772..1062355	+	527	167039679	-	Teth514_1029	-	2-alkenal reductase
1005	 29.53	-1	1062345..1063922	+	525	167039680	-	Teth514_1030	-	hypothetical protein
1006	 29.13	-1	1063935..1064885	+	316	167039681	-	Teth514_1031	-	hypothetical protein
1007	 27.39	-1	1064897..1066393	+	498	167039682	-	Teth514_1032	-	hypothetical protein
1008	 28.23	-1	1066383..1067087	+	234	167039683	-	Teth514_1033	-	hypothetical protein
1009	 33.33	0	1067097..1068629	-	510	167039684	-	Teth514_1034	-	ATP-dependent metalloprotease FtsH
1010	 39.13	+1	1068764..1069747	+	327	167039685	-	Teth514_1035	-	putative CoA-substrate-specific enzyme activase
1011	 32.76	0	1069967..1071721	+	584	167039686	-	Teth514_1036	-	cell division protein FtsA
1012	 30.37	-1	1071818..1072324	+	168	167039687	-	Teth514_1037	-	hypothetical protein
1013	 28.57	-1	1072343..1072699	+	118	167039688	-	Teth514_1038	-	DNA polymerase beta subunit
1014	 26.72	-1	1072668..1073075	+	135	167039689	-	Teth514_1039	-	HI0074 family nucleotidyltransferase substrate binding protein
1015	 32.16	0	1073162..1073842	+	226	167039690	-	Teth514_1040	-	HAD family hydrolase
1016	 37.79	0	1074046..1074651	+	201	167039691	-	Teth514_1041	-	50S ribosomal protein L25/general stress protein Ctc
1017	 34.30	0	1074682..1076019	-	445	167039692	-	Teth514_1042	-	diaminopimelate decarboxylase
1018	 31.36	0	1076465..1076920	+	151	167039693	-	Teth514_1043	-	hypothetical protein
1019	 36.62	0	1077155..1078279	+	374	167039694	-	Teth514_1044	-	ABC transporter related
1020	 26.69	-1	1078683..1079735	+	350	167039695	-	Teth514_1045	-	transcriptional regulator, CdaR
1021	 34.93	0	1079742..1080428	+	228	167039696	-	Teth514_1046	-	cell division ATP-binding protein FtsE
1022	 28.72	-1	1080418..1081305	+	295	167039697	-	Teth514_1047	-	hypothetical protein
1023	 36.67	0	1081329..1082468	+	379	167039698	-	Teth514_1048	-	peptidase M23B
1024	 34.42	0	1082556..1083752	+	398	167039699	-	Teth514_1049	-	carboxyl-terminal protease
1025	 34.38	0	1083762..1085006	+	414	167039700	-	Teth514_1050	-	PDZ/DHR/GLGF domain-containing protein
1026	 31.27	0	1085020..1085745	+	241	167039701	-	Teth514_1051	-	2-phosphosulfolactate phosphatase
1027	 36.40	0	1085906..1087891	+	661	167039702	-	Teth514_1052	-	excinuclease ABC subunit B
1028	 36.89	0	1087901..1090684	+	927	167039703	-	Teth514_1053	-	excinuclease ABC, A subunit
1029	 30.86	0	1090694..1091098	+	134	167039704	-	Teth514_1054	-	FHA domain-containing protein
1030	 34.78	0	1091110..1092354	+	414	167039705	-	Teth514_1055	-	cell cycle protein
1031	 36.08	0	1092329..1093750	+	473	167039706	-	Teth514_1056	-	peptidoglycan glycosyltransferase
1032	 35.39	0	1093768..1095615	+	615	167039707	-	Teth514_1057	-	excinuclease ABC subunit C
1033	 33.84	0	1095900..1096880	-	326	167039708	-	Teth514_1058	-	biotin--acetyl-CoA-carboxylase ligase
1034	 35.08	0	1097027..1097944	+	305	167039709	-	Teth514_1059	-	HPr kinase/phosphorylase
1035	 35.09	0	1097960..1098697	+	245	167039710	-	Teth514_1060	-	putative hydrolase
1036	 38.98	+1	1098694..1099632	+	312	167039711	-	Teth514_1061	-	ROK family glucokinase
1037	 36.80	0	1099645..1101117	+	490	167039712	-	Teth514_1062	-	AMP-dependent synthetase and ligase
1038	 31.83	0	1101136..1101735	+	199	167039713	-	Teth514_1063	-	hypothetical protein
1039	 30.25	-1	1101800..1101961	+	53	167039714	-	Teth514_1064	-	hypothetical protein
1040	 36.25	0	1102062..1103468	+	468	167039715	-	Teth514_1065	-	hypothetical protein
1041	 32.34	0	1103519..1104520	+	333	167039716	-	Teth514_1066	-	radical SAM domain-containing protein
1042	 25.00	-2	1104659..1104886	+	75	167039717	-	Teth514_1067	-	hypothetical protein
1043	 32.74	0	1104955..1105293	+	112	167039718	-	Teth514_1068	-	hypothetical protein
1044	 27.13	-1	1105435..1105869	+	144	167039719	-	Teth514_1069	-	hypothetical protein
1045	 34.01	0	1106352..1106945	+	197	167039720	-	Teth514_1070	-	resolvase domain-containing protein
1046	 33.40	0	1106926..1108362	+	478	167039721	-	Teth514_1071	-	transposase, putative
1047	 35.75	0	1108512..1109504	+	330	167039722	-	Teth514_1072	-	periplasmic binding protein/LacI transcriptional regulator
1048	 39.30	+1	1109562..1110650	+	362	167039723	-	Teth514_1073	-	oxidoreductase domain-containing protein
1049	 35.71	0	1110665..1111714	+	349	167039724	-	Teth514_1074	-	oxidoreductase domain-containing protein
1050	 32.53	0	1111732..1112481	+	249	167039725	-	Teth514_1075	-	xylose isomerase domain-containing protein
1051	 36.46	0	1112482..1113408	+	308	167039726	-	Teth514_1076	-	xylose isomerase domain-containing protein
1052	 31.05	0	1113516..1114436	+	306	167039727	-	Teth514_1077	-	auxin efflux carrier
1053	 36.63	0	1114459..1115430	+	323	167039728	-	Teth514_1078	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1054	 33.47	0	1115672..1116427	+	251	167039729	-	Teth514_1079	-	DeoR family transcriptional regulator
1055	 36.08	0	1116466..1117047	+	193	167039730	-	Teth514_1080	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1056	 34.68	0	1117098..1118504	+	468	167039731	-	Teth514_1081	-	6-phosphogluconate dehydrogenase
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.