IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
926	 45.21	0	958716..959279	+	187	148270071	-	Tpet_0937	-	2'-5' RNA ligase
927	 47.43	0	959272..960342	+	356	148270072	recA	Tpet_0938	-	recombinase A
928	 42.18	-1	960272..960757	+	161	148270073	-	Tpet_0939	-	regulatory protein RecX
929	 45.08	0	960757..962280	+	507	148270074	-	Tpet_0940	-	metal dependent phosphohydrolase
930	 42.35	-1	962486..963472	+	328	148270075	-	Tpet_0941	-	alanine racemase
931	 46.14	0	963502..964758	+	418	148270076	-	Tpet_0942	-	extracellular solute-binding protein
932	 39.64	-1	964803..966134	+	443	148270077	-	Tpet_0943	-	hypothetical protein
933	 39.64	-1	966185..968341	+	718	148270078	-	Tpet_0944	-	hypothetical protein
934	 42.27	-1	968338..969210	+	290	148270079	-	Tpet_0945	-	binding-protein-dependent transport systems inner membrane component
935	 41.48	-1	969207..970028	+	273	148270080	-	Tpet_0946	-	binding-protein-dependent transport systems inner membrane component
936	 48.82	0	970041..970931	+	296	148270081	-	Tpet_0947	-	glycosidase, PH1107-related
937	 46.09	0	970947..973979	+	1010	148270082	-	Tpet_0948	-	glycoside hydrolase family protein
938	 42.78	0	974183..974362	+	59	148270083	-	Tpet_0949	-	hypothetical protein
939	 43.61	0	974434..975348	-	304	148270084	-	Tpet_0950	-	hypothetical protein
940	 47.17	0	975656..978097	+	813	148270085	-	Tpet_0951	-	glycosyltransferase 36
941	 46.38	0	978210..979550	+	446	148270086	-	Tpet_0952	-	Beta-glucosidase
942	 40.57	-1	979772..982216	+	814	148270087	-	Tpet_0953	-	alpha amylase, catalytic region
943	 48.62	0	982252..983487	+	411	148270088	-	Tpet_0954	-	extracellular solute-binding protein
944	 46.94	0	983545..984426	+	293	148270089	-	Tpet_0955	-	binding-protein-dependent transport systems inner membrane component
945	 46.24	0	984439..985275	+	278	148270090	-	Tpet_0956	-	binding-protein-dependent transport systems inner membrane component
946	 44.73	0	985354..986502	+	382	148270091	-	Tpet_0957	-	ROK family protein
947	 43.78	0	986523..988265	-	580	148270092	-	Tpet_0958	-	WD-40 repeat-containing protein
948	 46.33	0	988342..990873	-	843	148270093	-	Tpet_0959	-	pullulanase, type I
949	 45.78	0	990891..992915	-	674	148270094	-	Tpet_0960	-	glycoside hydrolase family 13 protein
950	 45.67	0	992931..994073	-	380	148270095	-	Tpet_0961	-	hypothetical protein
951	 47.51	0	994084..994746	-	220	148270096	-	Tpet_0962	-	hypothetical protein
952	 45.70	0	994751..994936	-	61	148270097	-	Tpet_0963	-	hypothetical protein
953	 47.26	0	994989..996101	-	370	148270098	-	Tpet_0964	-	hypothetical protein
954	 44.24	0	996114..997781	-	555	148270099	-	Tpet_0965	-	alpha amylase, catalytic region
955	 47.92	0	998043..999221	+	392	148270100	-	Tpet_0966	-	extracellular solute-binding protein
956	 45.67	0	999298..1001031	+	577	148270101	-	Tpet_0967	-	binding-protein-dependent transport systems inner membrane component
957	 44.24	0	1001028..1003529	+	833	148270102	-	Tpet_0968	-	binding-protein-dependent transport systems inner membrane component
958	 48.17	0	1003526..1004947	+	473	148270103	-	Tpet_0969	-	alpha amylase, catalytic region
959	 48.65	0	1005082..1006524	+	480	148270104	-	Tpet_0970	-	glycoside hydrolase family protein
960	 44.33	0	1006675..1007265	+	196	148270105	-	Tpet_0971	-	hypothetical protein
961	 44.36	0	1007300..1007689	+	129	148270106	-	Tpet_0972	-	transposase IS200-family protein
962	 48.06	0	1007674..1008882	+	402	148270107	-	Tpet_0973	-	IS605 family transposase OrfB
963	 47.83	0	1008867..1009349	+	160	148270108	-	Tpet_0974	-	metal dependent phosphohydrolase
964	 46.88	0	1009306..1010073	-	255	148270109	-	Tpet_0975	-	beta-lactamase domain-containing protein
965	 59.60	+2	1010122..1010319	-	65	148270110	-	Tpet_0976	-	hypothetical protein
966	 49.07	0	1010325..1010540	-	71	148270111	-	Tpet_0977	-	hypothetical protein
967	 44.07	0	1010614..1012290	-	558	148270112	-	Tpet_0978	-	metal dependent phosphohydrolase
968	 48.76	0	1012437..1012637	+	66	148270113	-	Tpet_0979	-	cold-shock DNA-binding domain-containing protein
969	 46.30	0	1012759..1012974	+	71	148270114	-	Tpet_0980	-	ribosomal protein L31
970	 43.20	0	1013008..1013382	+	124	148270115	-	Tpet_0981	-	RNA-binding S1 domain-containing protein
971	 47.26	0	1013415..1014563	-	382	148270116	-	Tpet_0982	-	ErfK/YbiS/YcfS/YnhG family protein
972	 47.34	0	1014526..1015710	-	394	148270117	-	Tpet_0983	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
973	 44.17	0	1015713..1015952	-	79	148270118	-	Tpet_0984	-	DNA-directed RNA polymerase, omega subunit
974	 48.08	0	1015937..1016560	-	207	148270119	-	Tpet_0985	-	guanylate kinase
975	 46.24	0	1016572..1016850	-	92	148270120	-	Tpet_0986	-	hypothetical protein
976	 45.51	0	1016863..1017741	-	292	148270121	-	Tpet_0987	-	hypothetical protein
977	 47.45	0	1017775..1018929	-	384	148270122	-	Tpet_0988	-	cysteine desulfurase
978	 45.16	0	1018926..1019669	-	247	148270123	-	Tpet_0989	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
979	 45.95	0	1019666..1020862	-	398	148270124	-	Tpet_0990	-	thiamine biosynthesis/tRNA modification protein ThiI
980	 44.97	0	1020931..1022004	+	357	148270125	-	Tpet_0991	-	TPR repeat-containing protein
981	 44.81	0	1021989..1022711	+	240	148270126	-	Tpet_0992	-	peptidase A24A domain-containing protein
982	 45.41	0	1022712..1023887	+	391	148270127	-	Tpet_0993	-	SAM-dependent methyltransferase-like protein
983	 48.57	0	1023893..1025080	+	395	148270128	-	Tpet_0994	-	aspartate aminotransferase
984	 45.38	0	1025118..1026761	+	547	148270129	-	Tpet_0995	-	metal dependent phosphohydrolase
985	 43.78	0	1026748..1027350	-	200	148270130	-	Tpet_0996	-	HAD family hydrolase
986	 48.86	0	1027478..1028791	+	437	148270131	-	Tpet_0997	-	MATE efflux family protein
987	 44.53	0	1028803..1029186	+	127	148270132	-	Tpet_0998	-	hypothetical protein
988	 44.73	0	1029168..1030949	-	593	148270133	-	Tpet_0999	-	sulfatase
989	 44.62	0	1030951..1032696	-	581	148270134	-	Tpet_1000	-	hypothetical protein
990	 45.46	0	1032693..1034201	-	502	148270135	-	Tpet_1001	-	lysyl-tRNA synthetase
991	 46.92	0	1034215..1034685	-	156	148270136	-	Tpet_1002	-	transcription elongation factor GreA
992	 43.95	0	1034682..1035152	-	156	148270137	-	Tpet_1003	-	transcriptional regulator NrdR
993	 40.64	-1	1035149..1036024	-	291	148270138	-	Tpet_1004	-	hypothetical protein
994	 47.30	0	1036030..1036974	-	314	148270139	-	Tpet_1005	-	protein of unknown function UPF0052 and CofD
995	 45.74	0	1036978..1037823	-	281	148270140	-	Tpet_1006	-	hypothetical protein
996	 38.95	-2	1037820..1038086	-	88	148270141	-	Tpet_1007	-	hypothetical protein
997	 42.70	-1	1038064..1038330	-	88	148270142	-	Tpet_1008	-	hypothetical protein
998	 46.88	0	1038351..1038926	-	191	148270143	-	Tpet_1009	-	hypothetical protein
999	 46.07	0	1038905..1039807	-	300	148270144	-	Tpet_1010	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1000	 43.12	0	1039860..1040891	+	343	148270145	-	Tpet_1011	-	radical SAM protein
1001	 44.88	0	1040888..1041502	+	204	148270146	-	Tpet_1012	-	PASTA domain-containing protein
1002	 46.17	0	1041499..1042386	+	295	148270147	-	Tpet_1013	-	ribosome small subunit-dependent GTPase A
1003	 45.55	0	1042386..1043048	+	220	148270148	-	Tpet_1014	-	ribulose-phosphate 3-epimerase
1004	 47.36	0	1043017..1045398	-	793	148270149	-	Tpet_1015	-	DNA mismatch repair protein
1005	 46.67	0	1045395..1045829	-	144	148270150	-	Tpet_1016	-	GCN5-related N-acetyltransferase
1006	 46.56	0	1045894..1047072	+	392	148270151	-	Tpet_1017	-	hypothetical protein
1007	 46.48	0	1047076..1047942	+	288	148270152	-	Tpet_1018	-	hypothetical protein
1008	 49.53	+1	1047920..1049080	+	386	148270153	-	Tpet_1019	-	amidohydrolase
1009	 49.80	+1	1049087..1049827	-	246	148270154	-	Tpet_1020	-	3-oxoacyl-(acyl-carrier-protein) reductase
1010	 45.10	0	1049917..1051038	+	373	148270155	-	Tpet_1021	-	threonyl/alanyl tRNA synthetase, SAD
1011	 47.55	0	1051029..1051823	+	264	148270156	-	Tpet_1022	-	hypothetical protein
1012	 50.06	+1	1051813..1052601	+	262	148270157	-	Tpet_1023	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1013	 49.75	+1	1052598..1053809	+	403	148270158	-	Tpet_1024	-	S-layer domain-containing protein
1014	 50.05	+1	1053906..1054910	+	334	148270159	ruvB	Tpet_1025	-	Holliday junction DNA helicase B
1015	 48.12	0	1054922..1055611	+	229	148270160	-	Tpet_1026	-	alanine racemase domain-containing protein
1016	 45.79	0	1055612..1055908	+	98	148270161	-	Tpet_1027	-	protein of unknown function YGGT
1017	 48.13	0	1055905..1056681	+	258	148270162	-	Tpet_1028	-	ATP-NAD/AcoX kinase
1018	 46.05	0	1056678..1057385	+	235	148270163	-	Tpet_1029	-	phosphate uptake regulator, PhoU
1019	 44.73	0	1057369..1060554	+	1061	148270164	-	Tpet_1030	-	permease YjgP/YjgQ family protein
1020	 47.94	0	1060566..1061921	+	451	148270165	-	Tpet_1031	-	replicative DNA helicase
1021	 49.00	0	1061896..1062795	+	299	148270166	-	Tpet_1032	-	purine nucleoside phosphorylase
1022	 53.66	+2	1062805..1063542	+	245	148270167	-	Tpet_1033	-	zinc/iron permease
1023	 46.58	0	1063548..1064453	+	301	148270168	-	Tpet_1034	-	hypothetical protein
1024	 47.52	0	1064458..1064880	+	140	148270169	-	Tpet_1035	-	ribonuclease III
1025	 46.64	0	1064834..1065562	+	242	148270170	-	Tpet_1036	-	RNA methyltransferase
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.