IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
854	 46.20	0	883324..884310	+	328	148269999	-	Tpet_0864	-	binding-protein-dependent transport systems inner membrane component
855	 45.71	0	884321..885427	+	368	148270000	-	Tpet_0865	-	binding-protein-dependent transport systems inner membrane component
856	 44.28	0	885441..886436	+	331	148270001	-	Tpet_0866	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
857	 45.33	0	886433..887449	+	338	148270002	-	Tpet_0867	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
858	 49.95	+1	887463..889436	+	657	148270003	-	Tpet_0868	-	extracellular solute-binding protein
859	 44.89	0	889492..891516	+	674	148270004	-	Tpet_0869	-	Alpha-glucuronidase
860	 44.84	0	891517..892107	-	196	148270005	-	Tpet_0870	-	hypothetical protein
861	 43.93	0	892104..893198	-	364	148270006	-	Tpet_0871	-	hypothetical protein
862	 41.14	-1	893195..893527	-	110	148270007	-	Tpet_0872	-	hypothetical protein
863	 45.96	0	893524..895527	-	667	148270008	-	Tpet_0873	-	ferrous iron transport protein B
864	 44.52	0	895502..895966	-	154	148270009	-	Tpet_0874	-	FeoA family protein
865	 46.06	0	896067..896852	-	261	148270010	-	Tpet_0875	-	hypothetical protein
866	 47.87	0	897141..898358	+	405	148270011	-	Tpet_0877	-	IS605 family transposase OrfB
867	 42.17	-1	898496..898744	-	82	148270012	-	Tpet_0878	-	hypothetical protein
868	 45.36	0	898772..899320	-	182	148270013	-	Tpet_0879	-	hypothetical protein
869	 43.79	0	899405..901144	+	579	148270014	-	Tpet_0880	-	ABC transporter related
870	 44.54	0	901157..902236	+	359	148270015	-	Tpet_0881	-	peptidase M24
871	 45.64	0	902220..902609	-	129	148270016	-	Tpet_0882	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
872	 46.12	0	902669..903505	-	278	148270017	-	Tpet_0883	-	dihydropteroate synthase
873	 45.00	0	903509..904288	-	259	148270018	-	Tpet_0884	-	putative GTP cyclohydrolase
874	 46.56	0	904285..904647	-	120	148270019	-	Tpet_0885	-	putative 6-pyruvoyl tetrahydropterin synthase
875	 43.33	0	904658..905908	-	416	148270020	-	Tpet_0886	-	metal dependent phosphohydrolase
876	 42.59	-1	905889..906428	-	179	148270021	-	Tpet_0887	-	putative NTPase
877	 44.73	0	906425..907924	-	499	148270022	-	Tpet_0888	-	hypothetical protein
878	 47.39	0	907970..909043	-	357	148270023	-	Tpet_0889	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
879	 46.25	0	909130..910383	-	417	148270024	-	Tpet_0890	-	phospholipase/carboxylesterase
880	 39.48	-2	910600..911820	+	406	148270025	-	Tpet_0891	-	ROK family protein
881	 50.30	+1	911851..913665	+	604	148270026	-	Tpet_0892	-	extracellular solute-binding protein
882	 44.25	0	913728..914744	+	338	148270027	-	Tpet_0893	-	binding-protein-dependent transport systems inner membrane component
883	 47.21	0	914748..915590	+	280	148270028	-	Tpet_0894	-	binding-protein-dependent transport systems inner membrane component
884	 44.31	0	915594..916586	+	330	148270029	-	Tpet_0895	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
885	 46.59	0	916583..917389	+	268	148270030	-	Tpet_0896	-	ABC transporter related
886	 42.51	-1	917389..917595	+	68	148270031	-	Tpet_0897	-	hypothetical protein
887	 46.89	0	917576..919744	+	722	148270032	-	Tpet_0898	-	glycoside hydrolase family 3 protein
888	 49.69	+1	919760..921685	+	641	148270033	-	Tpet_0899	-	glycoside hydrolase family protein
889	 48.12	0	921746..923713	+	655	148270034	-	Tpet_0900	-	methyl-accepting chemotaxis sensory transducer
890	 44.68	0	923790..925340	+	516	148270035	-	Tpet_0901	-	DNA mismatch repair protein MutL
891	 43.69	0	925337..925645	-	102	148270036	-	Tpet_0902	-	hypothetical protein
892	 47.92	0	925642..926025	-	127	148270037	-	Tpet_0903	-	CrcB protein
893	 50.58	+1	926022..926792	-	256	148270038	fabG	Tpet_0904	-	3-ketoacyl-(acyl-carrier-protein) reductase
894	 48.62	0	926834..927808	-	324	148270039	-	Tpet_0905	-	thiamine pyrophosphate binding domain-containing protein
895	 50.55	+1	927823..929001	-	392	148270040	-	Tpet_0906	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
896	 46.00	0	929004..929303	-	99	148270041	-	Tpet_0907	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
897	 49.09	0	929316..929918	-	200	148270042	-	Tpet_0908	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
898	 44.09	0	929985..930821	-	278	148270043	-	Tpet_0909	-	methyl-accepting chemotaxis sensory transducer
899	 46.19	0	930831..931592	-	253	148270044	-	Tpet_0910	-	beta-lactamase domain-containing protein
900	 49.28	0	931796..932284	+	162	148270045	-	Tpet_0911	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
901	 50.66	+1	932287..932667	+	126	148270046	-	Tpet_0912	-	ferredoxin-like protein
902	 50.66	+1	932686..934509	+	607	148270047	-	Tpet_0913	-	NADH dehydrogenase (quinone)
903	 47.55	0	934506..934934	+	142	148270048	-	Tpet_0914	-	rubrerythrin
904	 46.81	0	934970..935644	-	224	148270049	-	Tpet_0915	-	cyclase family protein
905	 46.85	0	935678..936994	+	438	148270050	-	Tpet_0916	-	transglutaminase domain-containing protein
906	 47.30	0	936998..938035	+	345	148270051	-	Tpet_0917	-	mandelate racemase/muconate lactonizing protein
907	 46.85	0	938032..939984	+	650	148270052	-	Tpet_0918	-	putative DNA helicase
908	 49.12	0	941897..943423	-	508	148270053	ushA	Tpet_0919	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
909	 47.87	0	943498..944247	+	249	148270054	-	Tpet_0920	-	radical SAM domain-containing protein
910	 48.89	0	944231..944995	-	254	148270055	-	Tpet_0921	-	phosphodiesterase
911	 45.09	0	945028..946422	-	464	148270056	-	Tpet_0922	-	glutamyl-tRNA synthetase
912	 47.76	0	946520..946720	-	66	148270057	-	Tpet_0923	-	cold-shock DNA-binding domain-containing protein
913	 46.19	0	946954..948120	+	388	148270058	-	Tpet_0924	-	Orn/DAP/Arg decarboxylase 2
914	 48.37	0	948122..948520	-	132	148270059	-	Tpet_0925	-	hypothetical protein
915	 36.23	-2	948536..948811	-	91	148270060	-	Tpet_0926	-	hypothetical protein
916	 46.06	0	948816..949640	-	274	148270061	-	Tpet_0927	-	septum site-determining protein MinD
917	 46.92	0	949731..952115	+	794	148270062	-	Tpet_0928	-	peptidase S16, lon domain-containing protein
918	 48.16	0	952112..952927	+	271	148270063	-	Tpet_0929	-	cobalt transport protein
919	 48.54	0	952853..953812	-	319	148270064	-	Tpet_0930	-	L-lactate dehydrogenase
920	 42.55	-1	953856..955049	+	397	148270065	-	Tpet_0931	-	cell envelope-related transcriptional attenuator
921	 48.23	0	955054..955731	+	225	148270066	-	Tpet_0932	-	deoxyribonuclease V
922	 44.27	0	955803..956378	+	191	148270067	-	Tpet_0933	-	hypothetical protein
923	 44.63	0	956366..956905	+	179	148270068	-	Tpet_0934	-	hypothetical protein
924	 45.17	0	956902..958194	+	430	148270069	-	Tpet_0935	-	MiaB-like tRNA modifying enzyme YliG
925	 44.83	0	958191..958712	+	173	148270070	-	Tpet_0936	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
926	 45.21	0	958716..959279	+	187	148270071	-	Tpet_0937	-	2'-5' RNA ligase
927	 47.43	0	959272..960342	+	356	148270072	recA	Tpet_0938	-	recombinase A
928	 42.18	-1	960272..960757	+	161	148270073	-	Tpet_0939	-	regulatory protein RecX
929	 45.08	0	960757..962280	+	507	148270074	-	Tpet_0940	-	metal dependent phosphohydrolase
930	 42.35	-1	962486..963472	+	328	148270075	-	Tpet_0941	-	alanine racemase
931	 46.14	0	963502..964758	+	418	148270076	-	Tpet_0942	-	extracellular solute-binding protein
932	 39.64	-1	964803..966134	+	443	148270077	-	Tpet_0943	-	hypothetical protein
933	 39.64	-1	966185..968341	+	718	148270078	-	Tpet_0944	-	hypothetical protein
934	 42.27	-1	968338..969210	+	290	148270079	-	Tpet_0945	-	binding-protein-dependent transport systems inner membrane component
935	 41.48	-1	969207..970028	+	273	148270080	-	Tpet_0946	-	binding-protein-dependent transport systems inner membrane component
936	 48.82	0	970041..970931	+	296	148270081	-	Tpet_0947	-	glycosidase, PH1107-related
937	 46.09	0	970947..973979	+	1010	148270082	-	Tpet_0948	-	glycoside hydrolase family protein
938	 42.78	0	974183..974362	+	59	148270083	-	Tpet_0949	-	hypothetical protein
939	 43.61	0	974434..975348	-	304	148270084	-	Tpet_0950	-	hypothetical protein
940	 47.17	0	975656..978097	+	813	148270085	-	Tpet_0951	-	glycosyltransferase 36
941	 46.38	0	978210..979550	+	446	148270086	-	Tpet_0952	-	Beta-glucosidase
942	 40.57	-1	979772..982216	+	814	148270087	-	Tpet_0953	-	alpha amylase, catalytic region
943	 48.62	0	982252..983487	+	411	148270088	-	Tpet_0954	-	extracellular solute-binding protein
944	 46.94	0	983545..984426	+	293	148270089	-	Tpet_0955	-	binding-protein-dependent transport systems inner membrane component
945	 46.24	0	984439..985275	+	278	148270090	-	Tpet_0956	-	binding-protein-dependent transport systems inner membrane component
946	 44.73	0	985354..986502	+	382	148270091	-	Tpet_0957	-	ROK family protein
947	 43.78	0	986523..988265	-	580	148270092	-	Tpet_0958	-	WD-40 repeat-containing protein
948	 46.33	0	988342..990873	-	843	148270093	-	Tpet_0959	-	pullulanase, type I
949	 45.78	0	990891..992915	-	674	148270094	-	Tpet_0960	-	glycoside hydrolase family 13 protein
950	 45.67	0	992931..994073	-	380	148270095	-	Tpet_0961	-	hypothetical protein
951	 47.51	0	994084..994746	-	220	148270096	-	Tpet_0962	-	hypothetical protein
952	 45.70	0	994751..994936	-	61	148270097	-	Tpet_0963	-	hypothetical protein
953	 47.26	0	994989..996101	-	370	148270098	-	Tpet_0964	-	hypothetical protein
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.