IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.02   STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.22	0	72..1394	-	440	148269146	-	Tpet_0001	-	chromosomal replication initiator protein DnaA
2	 45.52	0	1518..2567	-	349	148269147	-	Tpet_0002	-	tRNA (guanine-N(7)-)-methyltransferase
3	 45.41	0	2558..3418	-	286	148269148	-	Tpet_0003	-	radical SAM domain-containing protein
4	 43.47	0	3415..4548	-	377	148269149	-	Tpet_0004	-	TPR repeat-containing protein
5	 47.43	0	4545..6041	-	498	148269150	-	Tpet_0005	-	carbohydrate kinase, YjeF related protein
6	 42.58	-1	6046..6510	-	154	148269151	-	Tpet_0006	-	lytic transglycosylase, catalytic
7	 47.13	0	6507..7586	-	359	148269152	-	Tpet_0007	-	iron-containing alcohol dehydrogenase
8	 45.80	0	7597..8013	-	138	148269153	-	Tpet_0008	-	OsmC family protein
9	 48.29	0	8023..10008	-	661	148269154	-	Tpet_0009	-	methyl-accepting chemotaxis sensory transducer
10	 44.62	0	10043..10972	-	309	148269155	-	Tpet_0010	-	phosphate transporter
11	 44.56	0	11313..12167	+	284	148269156	-	Tpet_0011	-	hypothetical protein
12	 44.49	0	12154..12870	+	238	148269157	-	Tpet_0012	-	ribonuclease H
13	 43.30	0	12821..13462	+	213	148269158	-	Tpet_0013	-	hypothetical protein
14	 46.35	0	13464..14231	+	255	148269159	-	Tpet_0014	-	MazG family protein
15	 44.34	0	14228..15217	+	329	148269160	-	Tpet_0015	-	PpiC-type peptidyl-prolyl cis-trans isomerase
16	 48.35	0	15214..16245	+	343	148269161	-	Tpet_0016	-	aIF-2BI family translation initiation factor
17	 45.14	0	16249..17019	+	256	148269162	-	Tpet_0017	-	flagellar biosynthetic protein FliR
18	 46.49	0	16950..18074	+	374	148269163	-	Tpet_0018	-	flagellar biosynthetic protein FlhB
19	 47.96	0	18071..20107	+	678	148269164	-	Tpet_0019	-	flagellar biosynthesis protein FlhA
20	 43.18	0	20104..21240	+	378	148269165	flhF	Tpet_0020	-	flagellar biosynthesis regulator FlhF
21	 43.36	0	21206..22033	+	275	148269166	-	Tpet_0021	-	cobyrinic acid a,c-diamide synthase
22	 45.80	0	22040..22729	+	229	148269167	-	Tpet_0022	-	type IV pilus assembly PilZ
23	 43.25	0	22726..23340	+	204	148269168	-	Tpet_0023	-	CheC, inhibitor of MCP methylation
24	 46.84	0	23337..23810	+	157	148269169	-	Tpet_0024	-	chemoreceptor glutamine deamidase CheD
25	 43.26	0	23828..24472	+	214	148269170	-	Tpet_0025	-	RNA polymerase, sigma 28 subunit, FliA/WhiG
26	 43.46	0	24456..24761	+	101	148269171	-	Tpet_0026	-	hypothetical protein
27	 44.10	0	24758..25240	+	160	148269172	-	Tpet_0027	-	hypothetical protein
28	 38.59	-2	25225..25890	+	221	148269173	-	Tpet_0028	-	hypothetical protein
29	 37.66	-2	25874..26104	-	76	148269174	-	Tpet_0029	-	hypothetical protein
30	 45.29	0	26104..26379	-	91	148269175	-	Tpet_0030	-	stage V sporulation protein S
31	 47.28	0	26443..27453	-	336	148269176	-	Tpet_0031	-	galactose-1-phosphate uridylyltransferase
32	 46.06	0	27458..28918	-	486	148269177	-	Tpet_0032	-	glycogen/starch synthase, ADP-glucose type
33	 44.60	0	28915..29544	-	209	148269178	-	Tpet_0033	-	beta-lactamase domain-containing protein
34	 45.24	0	29551..30264	-	237	148269179	-	Tpet_0034	-	bacitracin resistance protein BacA
35	 46.37	0	30266..30871	-	201	148269180	-	Tpet_0035	-	CBS domain-containing protein
36	 47.15	0	30868..31902	-	344	148269181	-	Tpet_0036	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
37	 47.01	0	31899..33404	-	501	148269182	-	Tpet_0037	-	peptidase M50
38	 47.48	0	33380..34510	-	376	148269183	-	Tpet_0038	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
39	 47.62	0	34489..35097	-	202	148269184	-	Tpet_0039	-	thiamine pyrophosphokinase
40	 45.50	0	35162..35572	+	136	148269185	-	Tpet_0040	-	methylated-DNA--protein-cysteine methyltransferase
41	 45.81	0	35569..37500	+	643	148269186	-	Tpet_0041	-	glycosyl transferase family protein
42	 47.49	0	37504..38061	+	185	148269187	-	Tpet_0042	-	hypothetical protein
43	 47.77	0	38027..39370	-	447	148269188	-	Tpet_0043	-	radical SAM domain-containing protein
44	 48.02	0	39367..40122	-	251	148269189	-	Tpet_0044	-	pantothenate kinase
45	 48.49	0	40243..41535	+	430	148269190	-	Tpet_0045	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
46	 47.10	0	41540..42454	+	304	148269191	-	Tpet_0046	-	homoserine O-succinyltransferase
47	 46.93	0	42530..43654	+	374	148269192	-	Tpet_0047	-	sodium ion-translocating decarboxylase, beta subunit
48	 44.95	0	43666..43863	+	65	148269193	-	Tpet_0048	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
49	 47.64	0	43865..45010	+	381	148269194	-	Tpet_0049	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
50	 48.60	0	45066..46355	+	429	148269195	-	Tpet_0050	-	phosphopyruvate hydratase
51	 43.97	0	46406..47326	+	306	148269196	-	Tpet_0051	-	cation diffusion facilitator family transporter
52	 40.25	-1	47323..47799	+	158	148269197	-	Tpet_0052	-	hypothetical protein
53	 44.28	0	47809..48429	+	206	148269198	-	Tpet_0053	-	peptidase M22, glycoprotease
54	 47.37	0	48436..50814	-	792	148269199	-	Tpet_0054	-	ATPase
55	 43.22	0	51070..51969	+	299	148269200	-	Tpet_0055	-	S-adenosyl-methyltransferase MraW
56	 46.03	0	52037..52225	+	62	148269201	-	Tpet_0056	-	hypothetical protein
57	 45.57	0	52235..53983	+	582	148269202	-	Tpet_0057	-	peptidoglycan glycosyltransferase
58	 46.23	0	53974..54927	-	317	148269203	-	Tpet_0058	-	thioredoxin reductase
59	 47.15	0	54934..55599	-	221	148269204	-	Tpet_0059	-	glutaredoxin-like domain-containing protein
60	 36.85	-2	55629..56111	-	160	148269205	-	Tpet_0060	-	hypothetical protein
61	 47.39	0	56108..57025	-	305	148269206	-	Tpet_0061	-	band 7 protein
62	 46.57	0	57039..57461	-	140	148269207	-	Tpet_0062	-	hypothetical protein
63	 46.03	0	57474..58316	-	280	148269208	-	Tpet_0063	-	ribonuclease Z
64	 44.89	0	58313..58762	-	149	148269209	-	Tpet_0064	-	ribosomal protein L9
65	 46.07	0	58845..59912	+	355	148269210	-	Tpet_0065	-	glucose-1-phosphate thymidyltransferase
66	 47.05	0	59936..60817	-	293	148269211	-	Tpet_0066	-	protein-export membrane protein SecF
67	 48.21	0	60814..62211	-	465	148269212	-	Tpet_0067	-	protein-export membrane protein SecD
68	 45.87	0	62215..62565	-	116	148269213	-	Tpet_0068	-	preprotein translocase, YajC subunit
69	 46.11	0	62558..63058	-	166	148269214	-	Tpet_0069	-	hypothetical protein
70	 43.76	0	63066..63947	-	293	148269215	-	Tpet_0070	-	riboflavin biosynthesis protein RibF
71	 46.02	0	63953..64882	-	309	148269216	-	Tpet_0071	-	tRNA pseudouridine synthase B
72	 43.43	0	64879..65274	-	131	148269217	-	Tpet_0072	-	ribosome-binding factor A
73	 46.27	0	65287..66144	-	285	148269218	-	Tpet_0073	-	metal dependent phosphohydrolase
74	 41.57	-1	66113..67594	-	493	148269219	-	Tpet_0074	-	histidine kinase
75	 46.83	0	67602..68609	-	335	148269220	-	Tpet_0075	-	Sua5/YciO/YrdC/YwlC family protein
76	 42.48	-1	68880..69896	+	338	148269221	-	Tpet_0076	-	heat-inducible transcription repressor HrcA
77	 42.58	-1	69902..70420	+	172	148269222	-	Tpet_0077	-	GrpE protein
78	 47.39	0	70427..71536	+	369	148269223	-	Tpet_0078	-	chaperone protein DnaJ
79	 44.23	0	71533..72624	-	363	148269224	-	Tpet_0079	-	GTP-binding protein, HSR1-related
80	 45.51	0	72636..73538	-	300	148269225	-	Tpet_0080	-	GTP-binding protein Era
81	 47.12	0	73528..73926	-	132	148269226	-	Tpet_0081	-	cytidine deaminase
82	 44.15	0	73865..75232	-	455	148269227	-	Tpet_0082	-	hypothetical protein
83	 42.32	-1	75249..75704	-	151	148269228	-	Tpet_0083	-	hypothetical protein
84	 47.87	0	75701..76615	-	304	148269229	-	Tpet_0084	-	glutamate formiminotransferase
85	 43.96	0	76612..77373	-	253	148269230	-	Tpet_0085	-	response regulator receiver protein
86	 46.54	0	77412..78782	-	456	148269231	-	Tpet_0086	-	PEGA domain-containing protein
87	 42.59	-1	78799..79446	-	215	148269232	-	Tpet_0087	-	hypothetical protein
88	 45.30	0	79495..80505	-	336	148269233	-	Tpet_0088	-	cell cycle protein
89	 40.46	-1	80572..81777	-	401	148269234	-	Tpet_0089	-	S-layer-like domain-containing protein
90	 45.25	0	81774..83477	-	567	148269235	-	Tpet_0090	-	type II secretion system protein E
91	 47.54	0	83477..84532	-	351	148269236	-	Tpet_0091	-	cell division protein FtsZ
92	 43.49	0	84549..85799	-	416	148269237	-	Tpet_0092	-	cell division protein FtsA
93	 36.94	-2	85801..86355	-	184	148269238	-	Tpet_0093	-	hypothetical protein
94	 45.16	0	86358..88268	-	636	148269239	-	Tpet_0094	-	DNA gyrase, B subunit
95	 40.20	-1	88249..88554	-	101	148269240	-	Tpet_0095	-	Zn-ribbon-containing protein
96	 44.16	0	88551..89372	-	273	148269241	-	Tpet_0096	-	aminotransferase, class IV
97	 43.98	0	89332..90636	-	434	148269242	-	Tpet_0097	-	MiaB-like tRNA modifying enzyme
98	 43.71	0	90633..91085	-	150	148269243	-	Tpet_0098	-	CBS domain-containing protein
99	 44.38	0	91086..92045	-	319	148269244	-	Tpet_0099	-	ribokinase-like domain-containing protein
100	 39.43	-2	92075..92779	-	234	148269245	-	Tpet_0100	-	ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components-like protein
46.02	MEAN

3.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.