IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 49.40	+1	644680..645432	+	250	148269776	-	Tpet_0640	-	hypothetical protein
632	 46.46	0	645448..646224	+	258	148269777	-	Tpet_0641	-	hypothetical protein
633	 42.47	-1	646230..646973	+	247	148269778	-	Tpet_0642	-	LamG domain-containing protein
634	 47.24	0	646998..648860	-	620	148269779	-	Tpet_0643	-	hypothetical protein
635	 48.47	0	648981..649832	-	283	148269780	-	Tpet_0644	-	binding-protein-dependent transport systems inner membrane component
636	 46.99	0	649832..650761	-	309	148269781	-	Tpet_0645	-	binding-protein-dependent transport systems inner membrane component
637	 47.09	0	650751..651731	-	326	148269782	-	Tpet_0646	-	ABC-type sugar transport system periplasmic component-like protein
638	 45.57	0	651728..652054	-	108	148269783	-	Tpet_0647	-	hypothetical protein
639	 48.49	0	652247..653737	+	496	148269784	-	Tpet_0648	-	L-arabinose isomerase
640	 44.10	0	653756..654712	-	318	148269785	-	Tpet_0649	-	periplasmic binding protein/LacI transcriptional regulator
641	 46.45	0	654829..656040	-	403	148269786	-	Tpet_0650	-	acetate kinase
642	 46.60	0	656053..656994	-	313	148269787	-	Tpet_0651	-	fructose-1,6-bisphosphate aldolase, class II
643	 48.90	0	657042..659687	-	881	148269788	-	Tpet_0652	-	pyruvate phosphate dikinase
644	 45.26	0	659762..660994	-	410	148269789	-	Tpet_0653	-	hypothetical protein
645	 45.15	0	661059..661904	+	281	148269790	-	Tpet_0654	-	methylenetetrahydrofolate reductase
646	 44.01	0	661891..662499	+	202	148269791	-	Tpet_0655	-	vitamin B12 dependent methionine synthase, activation region
647	 46.47	0	662483..664789	+	768	148269792	-	Tpet_0656	-	homocysteine S-methyltransferase
648	 45.53	0	664794..666146	+	450	148269793	trmE	Tpet_0657	-	tRNA modification GTPase TrmE
649	 46.52	0	666175..666447	-	90	148269794	-	Tpet_0658	-	histone family protein DNA-binding protein
650	 44.03	0	666628..668301	-	557	148269795	-	Tpet_0659	-	excinuclease ABC, C subunit
651	 44.44	0	668261..668980	-	239	148269796	-	Tpet_0660	-	pseudouridine synthase
652	 47.79	0	668977..670857	-	626	148269797	-	Tpet_0661	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
653	 44.60	0	670868..671968	-	366	148269798	-	Tpet_0662	-	DNA polymerase III, beta subunit
654	 45.99	0	671982..673190	-	402	148269799	-	Tpet_0663	-	phosphate transporter
655	 42.15	-1	673203..673871	-	222	148269800	-	Tpet_0664	-	hypothetical protein
656	 43.75	0	673868..674779	-	303	148269801	-	Tpet_0665	-	D-alanine--D-alanine ligase
657	 43.64	0	674694..676595	-	633	148269802	-	Tpet_0666	-	DNA topoisomerase I
658	 43.82	0	676588..677598	-	336	148269803	-	Tpet_0667	-	metal dependent phosphohydrolase
659	 38.68	-2	677585..677977	-	130	148269804	-	Tpet_0668	-	hypothetical protein
660	 45.59	0	678002..678262	-	86	148269805	-	Tpet_0669	-	ribosomal protein L28
661	 44.59	0	678265..678717	-	150	148269806	smpB	Tpet_0670	-	SsrA-binding protein
662	 43.43	0	678719..679045	-	108	148269807	-	Tpet_0671	-	hypothetical protein
663	 46.39	0	679042..679332	-	96	148269808	-	Tpet_0672	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
664	 39.68	-1	679295..679546	-	83	148269809	-	Tpet_0673	-	carbon storage regulator, CsrA
665	 47.83	0	679551..680564	-	337	148269810	-	Tpet_0674	-	DNA protecting protein DprA
666	 51.16	+1	680551..680853	-	100	148269811	-	Tpet_0675	-	Fe-S cluster domain-containing protein
667	 48.96	0	680858..681433	-	191	148269812	-	Tpet_0676	-	electron transport complex, RnfABCDGE type, A subunit
668	 47.10	0	681430..682032	-	200	148269813	-	Tpet_0677	-	SoxR-reducing system protein RsxE
669	 47.26	0	682029..682703	-	224	148269814	-	Tpet_0678	-	electron transport complex, RnfABCDGE type, G subunit
670	 48.90	0	682700..683656	-	318	148269815	-	Tpet_0679	-	electron transport complex, RnfABCDGE type, D subunit
671	 48.55	0	683653..684960	-	435	148269816	-	Tpet_0680	-	electron transport complex, RnfABCDGE type, C subunit
672	 44.72	0	684965..685816	-	283	148269817	-	Tpet_0681	-	radical SAM domain-containing protein
673	 46.67	0	685813..686037	-	74	148269818	-	Tpet_0682	-	hypothetical protein
674	 42.40	-1	686082..687107	-	341	148269819	-	Tpet_0683	-	hypothetical protein
675	 46.86	0	687111..688382	-	423	148269820	glgC	Tpet_0684	-	glucose-1-phosphate adenylyltransferase
676	 45.18	0	688394..689533	-	379	148269821	-	Tpet_0685	-	glucose-1-phosphate adenylyltransferase, GlgD subunit
677	 41.80	-1	689546..690088	-	180	148269822	-	Tpet_0686	-	hypothetical protein
678	 46.64	0	690156..691628	+	490	148269823	-	Tpet_0687	-	UDP-N-acetylmuramyl-tripeptide synthetase
679	 46.29	0	691625..692905	+	426	148269824	-	Tpet_0688	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
680	 46.53	0	692902..693810	+	302	148269825	-	Tpet_0689	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
681	 44.93	0	693807..695099	+	430	148269826	-	Tpet_0690	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
682	 44.66	0	695096..696190	+	364	148269827	-	Tpet_0691	-	cell cycle protein
683	 46.37	0	696187..697206	+	339	148269828	-	Tpet_0692	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
684	 47.16	0	697203..698576	+	457	148269829	-	Tpet_0693	-	UDP-N-acetylmuramate--alanine ligase
685	 44.86	0	698528..699004	-	158	148269830	-	Tpet_0694	-	phosphodiesterase
686	 45.57	0	699010..699867	-	285	148269831	-	Tpet_0695	-	auxin efflux carrier
687	 48.23	0	699927..701564	-	545	148269832	-	Tpet_0696	-	NADH dehydrogenase (quinone)
688	 47.89	0	701561..702034	-	157	148269833	-	Tpet_0697	-	NADH-quinone oxidoreductase, E subunit
689	 45.63	0	702102..702776	-	224	148269834	-	Tpet_0698	-	hypothetical protein
690	 46.01	0	702776..703714	-	312	148269835	-	Tpet_0699	-	D-cysteine desulfhydrase
691	 44.11	0	703767..704462	+	231	148269836	-	Tpet_0700	-	biotin--acetyl-CoA-carboxylase ligase
692	 49.15	0	704431..704664	-	77	148269837	-	Tpet_0701	-	RNA-binding S4 domain-containing protein
693	 46.57	0	704661..705461	-	266	148269838	-	Tpet_0702	-	ABC transporter related
694	 47.78	0	705511..707109	+	532	148269839	-	Tpet_0703	-	flagellar M-ring protein FliF
695	 48.31	0	707114..708121	+	335	148269840	fliG	Tpet_0704	-	flagellar motor switch protein G
696	 39.52	-1	708123..708833	+	236	148269841	-	Tpet_0705	-	flagellar biosynthesis/type III secretory pathway protein-like protein
697	 48.91	0	708826..710109	+	427	148269842	-	Tpet_0706	-	flagellar protein export ATPase FliI
698	 46.26	0	710086..712104	-	672	148269843	-	Tpet_0707	-	glycine--tRNA ligase
699	 46.81	0	712085..712945	-	286	148269844	glyQ	Tpet_0708	-	glycyl-tRNA synthetase subunit alpha
700	 48.58	0	712949..713335	-	128	148269845	-	Tpet_0709	-	putative endoribonuclease L-PSP
701	 48.14	0	713337..714761	-	474	148269846	-	Tpet_0710	-	glycine dehydrogenase subunit 2
702	 49.09	0	714758..716071	-	437	148269847	-	Tpet_0711	-	glycine dehydrogenase subunit 1
703	 49.05	0	716100..716468	-	122	148269848	-	Tpet_0712	-	glycine cleavage system protein H
704	 46.39	0	716471..717565	-	364	148269849	-	Tpet_0713	-	glycine cleavage system aminomethyltransferase T
705	 39.52	-1	717562..717771	-	69	148269850	-	Tpet_0714	-	hypothetical protein
706	 49.48	+1	717927..718886	+	319	148269851	-	Tpet_0715	-	6-phosphofructokinase
707	 45.61	0	718900..720300	+	466	148269852	-	Tpet_0716	-	pyruvate kinase
708	 45.14	0	720313..720939	+	208	148269853	-	Tpet_0717	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
709	 43.47	0	720939..721451	+	170	148269854	-	Tpet_0718	-	hypoxanthine phosphoribosyltransferase
710	 47.61	0	721502..723841	+	779	148269855	-	Tpet_0719	-	ATP-dependent DNA helicase RecG
711	 44.59	0	723825..724517	-	230	148269856	-	Tpet_0720	-	ABC transporter related
712	 49.18	0	724502..725233	-	243	148269857	-	Tpet_0721	-	binding-protein-dependent transport systems inner membrane component
713	 46.07	0	725230..726132	-	300	148269858	-	Tpet_0722	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
714	 48.37	0	726177..727925	-	582	148269859	-	Tpet_0723	-	hydrogenase, Fe-only
715	 44.29	0	728023..729081	-	352	148269860	-	Tpet_0724	-	DNA integrity scanning protein DisA
716	 46.83	0	729059..730384	-	441	148269861	-	Tpet_0725	-	DNA repair protein RadA
717	 47.62	0	730381..732843	-	820	148269862	-	Tpet_0726	-	ATPase
718	 45.25	0	733058..733972	+	304	148269863	-	Tpet_0727	-	PP-loop domain-containing protein
719	 47.97	0	733981..734472	-	163	148269864	-	Tpet_0728	-	hypothetical protein
720	 46.83	0	734516..735382	+	288	148269865	-	Tpet_0729	-	Ppx/GppA phosphatase
721	 41.22	-1	735551..736171	+	206	148269866	-	Tpet_0730	-	ABC transporter related
722	 46.64	0	736171..736959	+	262	148269867	-	Tpet_0731	-	hypothetical protein
723	 48.48	0	737450..737713	+	87	148269868	-	Tpet_0732	-	stage V sporulation protein S
724	 46.46	0	737768..738544	-	258	148269869	-	Tpet_0733	-	ABC transporter related
725	 47.44	0	738550..739584	-	344	148269870	-	Tpet_0734	-	transport system permease protein
726	 46.98	0	739578..740654	-	358	148269871	-	Tpet_0735	-	periplasmic binding protein
727	 46.76	0	740659..741090	-	143	148269872	-	Tpet_0736	-	hypothetical protein
728	 46.52	0	742904..744010	+	368	148269873	-	Tpet_0738	-	response regulator receiver modulated metal dependent phosphohydrolase
729	 47.98	0	743991..744386	+	131	148269874	-	Tpet_0739	-	activator of Hsp90 ATPase 1 family protein
730	 49.22	0	744366..745655	-	429	148269875	-	Tpet_0740	-	phosphoglucosamine mutase
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.