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Thermotoga petrophila RKU-1, complete genome - 1..1823511 1785 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 561 46.01 0 566956..568170 + 404 148269706 - Tpet_0569 - hypothetical protein 562 46.93 0 569357..569959 + 200 148269707 - Tpet_0570 - lysine exporter protein LysE/YggA 563 47.59 0 569952..570386 - 144 148269708 - Tpet_0571 - 3-dehydroquinate dehydratase 564 48.61 0 570383..571861 - 492 148269709 - Tpet_0572 - shikimate kinase., 3-dehydroquinate synthase 565 51.72 +1 571809..572939 - 376 148269710 - Tpet_0573 - chorismate synthase 566 47.64 0 572936..573697 - 253 148269711 - Tpet_0574 - shikimate dehydrogenase substrate binding subunit 567 50.79 +1 573694..574959 - 421 148269712 - Tpet_0575 - 3-phosphoshikimate 1-carboxyvinyltransferase 568 45.01 0 574956..575717 - 253 148269713 - Tpet_0576 - prephenate dehydrogenase 569 49.85 +1 575714..576730 - 338 148269714 - Tpet_0577 - 3-deoxy-7-phosphoheptulonate synthase 570 47.26 0 576987..578228 - 413 148269715 - Tpet_0578 - major facilitator transporter 571 46.71 0 578424..578924 - 166 148269716 - Tpet_0579 - hypothetical protein 572 47.92 0 578917..579300 - 127 148269717 - Tpet_0580 - hypothetical protein 573 34.26 -2 579483..579590 + 35 148269718 - Tpet_0581 - hypothetical protein 574 48.42 0 579672..581375 + 567 148269719 - Tpet_0582 - radical SAM domain-containing protein 575 47.46 0 581372..582610 + 412 148269720 - Tpet_0583 - dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 576 47.13 0 582637..583767 + 376 148269721 pyrC Tpet_0584 - dihydroorotase 577 49.69 +1 583730..584383 + 217 148269722 - Tpet_0585 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase-like protein 578 49.82 +1 584371..585183 + 270 148269723 - Tpet_0586 - dihydroorotate dehydrogenase family protein 579 46.86 0 585180..585785 + 201 148269724 - Tpet_0587 - orotidine 5'-phosphate decarboxylase 580 51.24 +1 585782..586345 + 187 148269725 pyrE Tpet_0588 - orotate phosphoribosyltransferase 581 46.13 0 586342..587646 + 434 148269726 - Tpet_0589 - amidohydrolase 3 582 34.67 -2 587621..588295 + 224 148269727 - Tpet_0590 - hypothetical protein 583 41.42 -1 588286..589212 - 308 148269728 - Tpet_0591 - DNA methylase N-4/N-6 domain-containing protein 584 43.70 0 589362..590345 - 327 148269729 - Tpet_0592 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 585 44.48 0 590363..591205 - 280 148269730 - Tpet_0593 - RpiR family transcriptional regulator 586 48.28 0 591218..591973 - 251 148269731 - Tpet_0594 - short-chain dehydrogenase/reductase SDR 587 46.50 0 591989..593272 - 427 148269732 - Tpet_0595 - TRAP dicarboxylate transporter, DctM subunit 588 41.25 -1 593274..593753 - 159 148269733 - Tpet_0596 - tripartite ATP-independent periplasmic transporter DctQ 589 46.59 0 593816..594826 - 336 148269734 - Tpet_0597 - TRAP dicarboxylate transporter, DctP subunit 590 45.13 0 594979..595563 + 194 148269735 - Tpet_0598 - hypothetical protein 591 45.59 0 595548..595751 - 67 148269736 - Tpet_0599 - heavy metal transport/detoxification protein 592 48.82 0 595779..597941 - 720 148269737 - Tpet_0600 - heavy metal translocating P-type ATPase 593 49.24 0 597916..598242 - 108 148269738 - Tpet_0601 - alkylhydroperoxidase 594 44.18 0 598235..598483 - 82 148269739 - Tpet_0602 - membrane protein-like protein 595 44.44 0 598578..598757 + 59 148269740 - Tpet_0603 - YHS domain-containing protein 596 48.96 0 598783..599742 - 319 148269741 - Tpet_0604 - aldo/keto reductase 597 47.03 0 599756..600733 - 325 148269742 - Tpet_0605 - oxidoreductase domain-containing protein 598 43.35 0 600793..601281 - 162 148269743 - Tpet_0606 - hypothetical protein 599 46.26 0 601377..603395 - 672 148269744 - Tpet_0607 - Beta-galactosidase 600 48.20 0 603439..605415 - 658 148269745 - Tpet_0608 - extracellular solute-binding protein 601 48.63 0 605735..608029 + 764 148269746 - Tpet_0609 - alpha-xylosidase YicI 602 48.87 0 608046..609467 - 473 148269747 - Tpet_0610 - L-fucose isomerase N-terminal_2 domain-containing protein 603 49.74 +1 609464..610804 - 446 148269748 - Tpet_0611 - Alpha-L-fucosidase 604 42.53 -1 611549..612994 - 481 148269749 - Tpet_0613 - carbohydrate kinase, FGGY 605 46.60 0 613008..613964 - 318 148269750 - Tpet_0614 - alcohol dehydrogenase 606 49.48 +1 613977..614750 - 257 148269751 - Tpet_0615 - short-chain dehydrogenase/reductase SDR 607 46.20 0 614859..615806 + 315 148269752 - Tpet_0616 - ribokinase-like domain-containing protein 608 50.99 +1 615905..616561 + 218 148269753 - Tpet_0617 - putative translaldolase 609 48.11 0 616587..617642 - 351 148269754 - Tpet_0618 - gamma-glutamyl kinase 610 49.60 +1 617645..618892 - 415 148269755 - Tpet_0619 - gamma-glutamyl phosphate reductase 611 46.11 0 618905..619405 - 166 148269756 leuD Tpet_0620 - 3-isopropylmalate dehydratase small subunit 612 49.96 +1 619419..620675 - 418 148269757 - Tpet_0621 - 3-isopropylmalate dehydratase large subunit 613 45.29 0 620668..621771 - 367 148269758 - Tpet_0622 - 2-methylcitrate synthase/citrate synthase II 614 48.65 0 621989..623248 + 419 148269759 - Tpet_0623 - 6-phosphofructokinase 615 45.76 0 623278..625071 - 597 148269760 - Tpet_0624 - ABC transporter, transmembrane region 616 47.17 0 625064..626797 - 577 148269761 - Tpet_0625 - ABC transporter related 617 42.16 -1 626794..627246 - 150 148269762 - Tpet_0626 - PadR-like family transcriptional regulator 618 43.32 0 627314..628525 - 403 148269763 - Tpet_0627 - glycerol-1-phosphate dehydrogenase (NAD(P)(+)) 619 48.13 0 628529..630049 - 506 148269764 - Tpet_0628 - carbohydrate kinase, FGGY 620 48.51 0 630062..630700 - 212 148269765 - Tpet_0629 - L-ribulose-5-phosphate 4-epimerase 621 46.03 0 630777..631847 - 356 148269766 - Tpet_0630 - aldose 1-epimerase 622 45.91 0 631876..633330 - 484 148269767 - Tpet_0631 - Alpha-N-arabinofuranosidase 623 41.85 -1 633345..635774 - 809 148269768 - Tpet_0632 - hypothetical protein 624 44.75 0 635786..637720 - 644 148269769 - Tpet_0633 - Alpha-N-arabinofuranosidase 625 43.27 0 637707..638561 - 284 148269770 - Tpet_0634 - binding-protein-dependent transport systems inner membrane component 626 44.87 0 638563..639507 - 314 148269771 - Tpet_0635 - binding-protein-dependent transport systems inner membrane component 627 43.43 0 639529..640776 - 415 148269772 - Tpet_0636 - extracellular solute-binding protein 628 42.66 -1 641028..642443 + 471 148269773 - Tpet_0637 - glycoside hydrolase family protein 629 45.02 0 642474..643226 + 250 148269774 - Tpet_0638 - hypothetical protein 630 46.57 0 643236..644663 + 475 148269775 - Tpet_0639 - glycoside hydrolase family protein 631 49.40 +1 644680..645432 + 250 148269776 - Tpet_0640 - hypothetical protein 632 46.46 0 645448..646224 + 258 148269777 - Tpet_0641 - hypothetical protein 633 42.47 -1 646230..646973 + 247 148269778 - Tpet_0642 - LamG domain-containing protein 634 47.24 0 646998..648860 - 620 148269779 - Tpet_0643 - hypothetical protein 635 48.47 0 648981..649832 - 283 148269780 - Tpet_0644 - binding-protein-dependent transport systems inner membrane component 636 46.99 0 649832..650761 - 309 148269781 - Tpet_0645 - binding-protein-dependent transport systems inner membrane component 637 47.09 0 650751..651731 - 326 148269782 - Tpet_0646 - ABC-type sugar transport system periplasmic component-like protein 638 45.57 0 651728..652054 - 108 148269783 - Tpet_0647 - hypothetical protein 639 48.49 0 652247..653737 + 496 148269784 - Tpet_0648 - L-arabinose isomerase 640 44.10 0 653756..654712 - 318 148269785 - Tpet_0649 - periplasmic binding protein/LacI transcriptional regulator 641 46.45 0 654829..656040 - 403 148269786 - Tpet_0650 - acetate kinase 642 46.60 0 656053..656994 - 313 148269787 - Tpet_0651 - fructose-1,6-bisphosphate aldolase, class II 643 48.90 0 657042..659687 - 881 148269788 - Tpet_0652 - pyruvate phosphate dikinase 644 45.26 0 659762..660994 - 410 148269789 - Tpet_0653 - hypothetical protein 645 45.15 0 661059..661904 + 281 148269790 - Tpet_0654 - methylenetetrahydrofolate reductase 646 44.01 0 661891..662499 + 202 148269791 - Tpet_0655 - vitamin B12 dependent methionine synthase, activation region 647 46.47 0 662483..664789 + 768 148269792 - Tpet_0656 - homocysteine S-methyltransferase 648 45.53 0 664794..666146 + 450 148269793 trmE Tpet_0657 - tRNA modification GTPase TrmE 649 46.52 0 666175..666447 - 90 148269794 - Tpet_0658 - histone family protein DNA-binding protein 650 44.03 0 666628..668301 - 557 148269795 - Tpet_0659 - excinuclease ABC, C subunit 651 44.44 0 668261..668980 - 239 148269796 - Tpet_0660 - pseudouridine synthase 652 47.79 0 668977..670857 - 626 148269797 - Tpet_0661 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 653 44.60 0 670868..671968 - 366 148269798 - Tpet_0662 - DNA polymerase III, beta subunit 654 45.99 0 671982..673190 - 402 148269799 - Tpet_0663 - phosphate transporter 655 42.15 -1 673203..673871 - 222 148269800 - Tpet_0664 - hypothetical protein 656 43.75 0 673868..674779 - 303 148269801 - Tpet_0665 - D-alanine--D-alanine ligase 657 43.64 0 674694..676595 - 633 148269802 - Tpet_0666 - DNA topoisomerase I 658 43.82 0 676588..677598 - 336 148269803 - Tpet_0667 - metal dependent phosphohydrolase 659 38.68 -2 677585..677977 - 130 148269804 - Tpet_0668 - hypothetical protein 660 45.59 0 678002..678262 - 86 148269805 - Tpet_0669 - ribosomal protein L28 46.02 MEAN 3.27 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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