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Thermotoga petrophila RKU-1, complete genome - 1..1823511 1785 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 362 51.39 +1 346665..349964 + 1099 148269507 - Tpet_0363 - carbamoyl-phosphate synthase, large subunit 363 49.67 +1 349983..351047 - 354 148269508 - Tpet_0364 - 3-isopropylmalate dehydrogenase 364 49.30 +1 351051..351551 - 166 148269509 - Tpet_0365 - 3-isopropylmalate dehydratase small subunit 365 52.15 +1 351556..352809 - 417 148269510 - Tpet_0366 - 3-isopropylmalate dehydratase, large subunit 366 50.65 +1 352811..354352 - 513 148269511 - Tpet_0367 - 2-isopropylmalate synthase 367 49.35 +1 354339..355955 - 538 148269512 - Tpet_0368 - alpha-isopropylmalate/homocitrate synthase family transferase 368 52.67 +2 355968..357632 - 554 148269513 - Tpet_0369 - dihydroxy-acid dehydratase 369 49.26 0 357622..358632 - 336 148269514 - Tpet_0370 - ketol-acid reductoisomerase 370 48.45 0 358632..359147 - 171 148269515 - Tpet_0371 - acetolactate synthase 3 regulatory subunit 371 49.94 +1 359144..360889 - 581 148269516 - Tpet_0372 - acetolactate synthase, large subunit, biosynthetic type 372 48.96 0 361061..363280 + 739 148269517 - Tpet_0373 - aspartate kinase 373 52.63 +2 363280..364326 + 348 148269518 - Tpet_0374 - threonine synthase 374 46.57 0 364323..365168 + 281 148269519 - Tpet_0375 - homoserine kinase 375 48.71 0 365180..365914 + 244 148269520 - Tpet_0376 - ABC transporter related 376 50.31 +1 367126..368256 - 376 148269521 - Tpet_0379 - malate dehydrogenase 377 51.52 +1 368262..368756 - 164 148269522 - Tpet_0380 - tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit 378 46.28 0 368746..369564 - 272 148269523 - Tpet_0381 - tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit 379 51.06 +1 369610..370878 + 422 148269524 - Tpet_0382 - tryptophan synthase subunit beta 380 46.67 0 370892..371746 + 284 148269525 - Tpet_0383 - cation diffusion facilitator family transporter 381 43.96 0 371743..374019 - 758 148269526 - Tpet_0384 - hypothetical protein 382 40.85 -1 374016..374600 - 194 148269527 - Tpet_0385 - hypothetical protein 383 42.39 -1 374784..375401 - 205 148269528 - Tpet_0386 - hypothetical protein 384 42.96 0 375408..375989 - 193 148269529 - Tpet_0387 - RNA polymerase factor sigma-70 385 48.94 0 375991..377541 - 516 148269530 - Tpet_0388 - binding-protein-dependent transport systems inner membrane component 386 49.90 +1 377555..378520 - 321 148269531 - Tpet_0389 - binding-protein-dependent transport systems inner membrane component 387 49.94 +1 378579..380318 - 579 148269532 - Tpet_0390 - extracellular solute-binding protein 388 49.06 0 380334..381503 - 389 148269533 - Tpet_0391 - oligopeptide/dipeptide ABC transporter, ATPase subunit 389 42.72 -1 381520..381732 - 70 148269534 - Tpet_0392 - hypothetical protein 390 45.75 0 381729..382670 - 313 148269535 - Tpet_0393 - methionyl-tRNA formyltransferase 391 45.95 0 382667..383887 - 406 148269536 - Tpet_0394 - small GTP-binding protein 392 46.15 0 383901..384173 - 90 148269537 - Tpet_0395 - RNA chaperone Hfq 393 43.25 0 384210..385127 - 305 148269538 - Tpet_0396 - tRNA delta(2)-isopentenylpyrophosphate transferase 394 45.75 0 385124..385888 - 254 148269539 - Tpet_0397 - hypothetical protein 395 48.57 0 386098..386727 - 209 148269540 - Tpet_0398 - hypothetical protein 396 48.92 0 386738..388129 - 463 148269541 hslU Tpet_0399 - ATP-dependent protease ATP-binding subunit 397 52.35 +1 388141..388671 - 176 148269542 - Tpet_0400 - ATP-dependent protease peptidase subunit 398 47.08 0 388753..389829 + 358 148269543 - Tpet_0401 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 399 46.34 0 389826..390755 + 309 148269544 - Tpet_0402 - putative GAF sensor protein 400 51.28 +1 390765..390959 - 64 148269545 - Tpet_0403 - hypothetical protein 401 42.44 -1 390956..391570 - 204 148269546 - Tpet_0404 - hypothetical protein 402 48.46 0 392602..393513 - 303 148269547 - Tpet_0407 - putative radical SAM protein 403 49.08 0 393585..395318 + 577 148269548 - Tpet_0408 - prolyl-tRNA synthetase 404 48.74 0 395315..396820 + 501 148269549 - Tpet_0409 - Mg chelatase, subunit ChlI 405 34.48 -2 396817..397251 - 144 148269550 - Tpet_0410 - flagellar export protein FliJ 406 44.85 0 397361..397942 + 193 148269551 - Tpet_0411 - phage SPO1 DNA polymerase-related protein 407 47.01 0 397944..398462 + 172 148269552 - Tpet_0412 - iron dependent repressor 408 49.14 0 398459..399388 + 309 148269553 - Tpet_0413 - NAD-dependent epimerase/dehydratase 409 47.06 0 399360..401159 + 599 148269554 - Tpet_0414 - fused recombination factor protein RarA/unknown domain-containing protein 410 48.86 0 401348..402964 - 538 148269555 - Tpet_0415 - chaperonin GroEL 411 42.65 -1 402979..403257 - 92 148269556 - Tpet_0416 - chaperonin Cpn10 412 47.98 0 403945..404982 + 345 148269557 - Tpet_0417 - binding-protein-dependent transport systems inner membrane component 413 49.68 +1 404996..405937 + 313 148269558 - Tpet_0418 - binding-protein-dependent transport systems inner membrane component 414 47.86 0 405950..406954 + 334 148269559 - Tpet_0419 - oligopeptide/dipeptide ABC transporter, ATPase subunit 415 48.23 0 406958..408112 + 384 148269560 - Tpet_0420 - oligopeptide/dipeptide ABC transporter, ATPase subunit 416 43.15 0 408109..408597 + 162 148269561 - Tpet_0421 - hypothetical protein 417 47.63 0 408610..409602 + 330 148269562 - Tpet_0422 - oligopeptide/dipeptide ABC transporter, ATPase subunit 418 44.80 0 409586..410440 + 284 148269563 - Tpet_0423 - hypothetical protein 419 46.52 0 410453..411013 + 186 148269564 - Tpet_0424 - DNA polymerase III, epsilon subunit 420 47.57 0 411018..412274 + 418 148269565 - Tpet_0425 - PhoH family protein 421 45.04 0 412239..412742 - 167 148269566 - Tpet_0426 - putative transcriptional regulator 422 43.19 0 412720..413409 - 229 148269567 - Tpet_0427 - chromosome segregation and condensation protein ScpA 423 46.10 0 413419..414405 - 328 148269568 - Tpet_0428 - tryptophanyl-tRNA synthetase 424 43.40 0 414472..415077 + 201 148269569 - Tpet_0429 - hypothetical protein 425 47.07 0 415049..415783 + 244 148269570 - Tpet_0430 - silent information regulator protein Sir2 426 45.71 0 415780..416304 + 174 148269571 - Tpet_0431 - hypothetical protein 427 47.11 0 416285..417133 - 282 148269572 - Tpet_0432 - HemK family modification methylase 428 47.90 0 417082..417390 - 102 148269573 - Tpet_0433 - hypothetical protein 429 48.07 0 417463..417747 + 94 148269574 - Tpet_0434 - hypothetical protein 430 48.74 0 417719..418471 + 250 148269575 - Tpet_0435 - binding-protein-dependent transport systems inner membrane component 431 48.58 0 418468..419418 + 316 148269576 - Tpet_0436 - NMT1/THI5 like protein 432 49.01 0 419415..420122 + 235 148269577 - Tpet_0437 - ABC transporter related 433 48.99 0 420106..424353 - 1415 148269578 - Tpet_0438 - putative CoA-substrate-specific enzyme activase 434 48.24 0 424782..425915 + 377 148269579 - Tpet_0439 - hypothetical protein 435 49.25 0 425912..428662 + 916 148269580 - Tpet_0440 - excinuclease ABC, A subunit 436 49.35 +1 428682..428912 + 76 148269581 - Tpet_0441 - preprotein translocase, SecG subunit 437 47.60 0 428917..430122 + 401 148269582 - Tpet_0442 - tyrosyl-tRNA synthetase 438 46.55 0 430205..431407 + 400 148269583 - Tpet_0443 - S-layer domain-containing protein 439 47.29 0 431442..432695 + 417 148269584 - Tpet_0444 - hypothetical protein 440 45.14 0 432889..433413 + 174 148269585 - Tpet_0445 - isochorismatase hydrolase 441 50.46 +1 433424..434719 + 431 148269586 - Tpet_0446 - nicotinic acid phosphoribosyltransferase-like protein 442 51.47 +1 434733..435614 + 293 148269587 - Tpet_0447 - pyridoxine biosynthesis protein 443 45.68 0 435618..436184 + 188 148269588 - Tpet_0448 - glutamine amidotransferase subunit PdxT 444 43.49 0 436181..436810 + 209 148269589 - Tpet_0449 - putative diguanylate cyclase 445 40.36 -1 436944..437840 + 298 148269590 - Tpet_0450 - integral membrane protein-like protein 446 41.75 -1 437837..438430 + 197 148269591 - Tpet_0451 - hypothetical protein 447 43.63 0 438423..438791 + 122 148269592 - Tpet_0452 - response regulator receiver protein 448 43.80 0 438784..440121 + 445 148269593 - Tpet_0453 - stage II sporulation E family protein 449 46.19 0 440121..440882 + 253 148269594 - Tpet_0454 - hypothetical protein 450 42.54 -1 440891..441607 + 238 148269595 - Tpet_0455 - hypothetical protein 451 43.16 0 441645..442397 + 250 148269596 - Tpet_0456 - protein-glutamate O-methyltransferase 452 44.03 0 442398..442958 + 186 148269597 - Tpet_0457 - lipoprotein signal peptidase 453 47.65 0 442816..443751 + 311 148269598 - Tpet_0458 - RluA family pseudouridine synthase 454 45.83 0 443748..446276 + 842 148269599 - Tpet_0459 - DNA polymerase III, alpha subunit 455 50.49 +1 446337..448184 + 615 148269600 - Tpet_0460 - 4-phytase 456 47.86 0 448235..453307 - 1690 148269601 - Tpet_0461 - DNA-directed RNA polymerase, beta' subunit 457 46.02 0 453324..457115 - 1263 148269602 - Tpet_0462 - DNA-directed RNA polymerase, beta subunit 458 49.10 0 457306..457692 - 128 148269603 - Tpet_0463 - ribosomal protein L7/L12 459 42.96 0 457708..458247 - 179 148269604 - Tpet_0464 - ribosomal protein L10 460 44.16 0 458389..459090 - 233 148269605 rplA Tpet_0465 - 50S ribosomal protein L1 461 46.95 0 459114..459539 - 141 148269606 - Tpet_0466 - ribosomal protein L11 46.02 MEAN 3.27 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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