IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1626	 45.83	0	1645671..1647311	-	546	148270771	-	Tpet_1650	-	arginyl-tRNA synthetase
1627	 43.56	0	1647355..1648185	-	276	148270772	-	Tpet_1651	-	hypothetical protein
1628	 44.44	0	1648178..1648699	-	173	148270773	-	Tpet_1652	-	hypothetical protein
1629	 46.48	0	1648727..1649989	-	420	148270774	-	Tpet_1653	-	histidyl-tRNA synthetase
1630	 47.53	0	1649986..1651485	-	499	148270775	-	Tpet_1654	-	TrkH family potassium uptake protein
1631	 46.27	0	1651492..1652148	-	218	148270776	-	Tpet_1655	-	TrkA domain-containing protein
1632	 46.06	0	1652145..1652576	-	143	148270777	-	Tpet_1656	-	TrkA domain-containing protein
1633	 45.14	0	1652596..1653264	-	222	148270778	-	Tpet_1657	-	rhomboid family protein
1634	 48.29	0	1653269..1654117	-	282	148270779	-	Tpet_1658	-	hypothetical protein
1635	 48.10	0	1654178..1656067	+	629	148270780	-	Tpet_1659	-	methionyl-tRNA synthetase
1636	 48.07	0	1656081..1658495	+	804	148270781	-	Tpet_1660	-	DNA gyrase, A subunit
1637	 45.07	0	1658492..1658866	+	124	148270782	-	Tpet_1661	-	hypothetical protein
1638	 46.80	0	1658863..1659456	+	197	148270783	-	Tpet_1662	-	SOS-response transcriptional repressor, LexA
1639	 43.27	0	1659468..1659809	+	113	148270784	-	Tpet_1663	-	anti-sigma-factor antagonist
1640	 49.07	0	1659806..1660237	+	143	148270785	-	Tpet_1664	-	ribose 5-phosphate isomerase B
1641	 46.79	0	1660227..1661021	+	264	148270786	-	Tpet_1665	-	ribosomal L11 methyltransferase
1642	 47.17	0	1660991..1661503	+	170	148270787	-	Tpet_1666	-	hypothetical protein
1643	 48.75	0	1661500..1662342	+	280	148270788	-	Tpet_1667	-	pantoate--beta-alanine ligase
1644	 50.84	+1	1662347..1662820	+	157	148270789	-	Tpet_1668	-	phosphodiesterase
1645	 52.41	+1	1662850..1663761	+	303	148270790	-	Tpet_1669	-	ExsB family protein
1646	 48.56	0	1663833..1666793	-	986	148270791	-	Tpet_1670	-	glycoside hydrolase family protein
1647	 49.90	+1	1666790..1668220	-	476	148270792	-	Tpet_1671	-	carbohydrate kinase, FGGY
1648	 49.93	+1	1668211..1668921	-	236	148270793	-	Tpet_1672	-	rhamnulose-1-phosphate aldolase
1649	 49.26	0	1668918..1670066	-	382	148270794	-	Tpet_1673	-	L-rhamnose isomerase
1650	 42.03	-1	1670066..1670410	-	114	148270795	-	Tpet_1674	-	hypothetical protein
1651	 42.57	-1	1670476..1671276	+	266	148270796	-	Tpet_1675	-	DeoR family transcriptional regulator
1652	 49.82	+1	1671301..1672701	+	466	148270797	-	Tpet_1676	-	glycoside hydrolase family protein
1653	 45.27	0	1672949..1674916	+	655	148270798	-	Tpet_1677	-	extracellular solute-binding protein
1654	 48.14	0	1675035..1676891	+	618	148270799	-	Tpet_1678	-	FG-GAP repeat-containing protein
1655	 46.45	0	1676917..1678197	+	426	148270800	-	Tpet_1679	-	extracellular solute-binding protein
1656	 42.02	-1	1678238..1679089	+	283	148270801	-	Tpet_1680	-	binding-protein-dependent transport systems inner membrane component
1657	 41.17	-1	1679093..1679896	+	267	148270802	-	Tpet_1681	-	binding-protein-dependent transport systems inner membrane component
1658	 42.42	-1	1680090..1682720	+	876	148270803	-	Tpet_1682	-	alpha-L-rhamnosidase
1659	 50.91	+1	1682714..1683697	+	327	148270804	-	Tpet_1683	-	binding-protein-dependent transport systems inner membrane component
1660	 48.91	0	1683708..1684811	+	367	148270805	-	Tpet_1684	-	binding-protein-dependent transport systems inner membrane component
1661	 49.50	+1	1684823..1685818	+	331	148270806	-	Tpet_1685	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1662	 48.19	0	1685805..1686827	+	340	148270807	-	Tpet_1686	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1663	 46.02	0	1686824..1688818	+	664	148270808	-	Tpet_1687	-	extracellular solute-binding protein
1664	 42.89	0	1688853..1690076	+	407	148270809	-	Tpet_1688	-	hypothetical protein
1665	 47.70	0	1690094..1691785	+	563	148270810	-	Tpet_1689	-	Beta-glucuronidase
1666	 44.85	0	1691791..1692945	+	384	148270811	-	Tpet_1690	-	hypothetical protein
1667	 44.77	0	1693028..1694365	+	445	148270812	-	Tpet_1691	-	major facilitator transporter
1668	 51.14	+1	1694414..1694677	+	87	148270813	-	Tpet_1692	-	stage V sporulation protein S
1669	 48.03	0	1694719..1696317	-	532	148270814	-	Tpet_1693	-	ferredoxin-dependent glutamate synthase
1670	 46.45	0	1696440..1697438	+	332	148270815	-	Tpet_1694	-	TrkA domain-containing protein
1671	 44.12	0	1697440..1697745	+	101	148270816	-	Tpet_1695	-	CutA1 divalent ion tolerance protein
1672	 49.03	0	1697726..1698241	-	171	148270817	-	Tpet_1696	-	hypothetical protein
1673	 45.10	0	1698238..1698951	-	237	148270818	-	Tpet_1697	-	ABC transporter related
1674	 43.12	0	1698948..1699427	-	159	148270819	-	Tpet_1698	-	outer membrane chaperone Skp (OmpH)
1675	 44.14	0	1699442..1699987	-	181	148270820	-	Tpet_1699	-	helix-hairpin-helix repeat-containing competence protein ComEA
1676	 46.44	0	1699984..1700685	-	233	148270821	-	Tpet_1700	-	hypothetical protein
1677	 49.40	+1	1700689..1701684	-	331	148270822	-	Tpet_1701	-	peptidase M42 family protein
1678	 47.35	0	1701681..1702700	-	339	148270823	-	Tpet_1702	-	cellulase
1679	 47.75	0	1702704..1703702	-	332	148270824	-	Tpet_1703	-	peptidase M42 family protein
1680	 48.50	0	1703705..1704337	-	210	148270825	-	Tpet_1704	-	septum site-determining protein MinC
1681	 46.27	0	1704397..1705254	+	285	148270826	-	Tpet_1705	-	alpha/beta hydrolase fold
1682	 45.02	0	1705237..1706502	-	421	148270827	-	Tpet_1706	-	citrate transporter
1683	 47.01	0	1706775..1707593	+	272	148270828	-	Tpet_1707	-	histidyl-tRNA synthetase-like protein
1684	 46.73	0	1707587..1708213	+	208	148270829	-	Tpet_1708	-	ATP phosphoribosyltransferase
1685	 50.04	+1	1708185..1709471	+	428	148270830	-	Tpet_1709	-	histidinol dehydrogenase
1686	 47.72	0	1709468..1710475	+	335	148270831	-	Tpet_1710	-	histidinol-phosphate aminotransferase
1687	 49.32	+1	1710472..1711059	+	195	148270832	-	Tpet_1711	-	imidazoleglycerol-phosphate dehydratase
1688	 48.18	0	1711056..1711661	+	201	148270833	hisH	Tpet_1712	-	imidazole glycerol phosphate synthase subunit HisH
1689	 47.25	0	1711640..1712365	+	241	148270834	-	Tpet_1713	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1690	 51.90	+1	1712355..1713119	+	254	148270835	-	Tpet_1714	-	imidazoleglycerol phosphate synthase, cyclase subunit
1691	 48.05	0	1713116..1713706	+	196	148270836	-	Tpet_1715	-	phosphoribosyl-ATP pyrophosphohydrolase
1692	 48.86	0	1713707..1714846	-	379	148270837	-	Tpet_1716	-	UDP-N-acetylglucosamine 2-epimerase
1693	 47.12	0	1714890..1715897	+	335	148270838	-	Tpet_1717	-	mannose-1-phosphate guanylyltransferase (GDP)
1694	 45.86	0	1715872..1716981	-	369	148270839	-	Tpet_1718	-	major facilitator transporter
1695	 45.68	0	1717126..1717368	+	80	148270840	-	Tpet_1719	-	YruB family glutaredoxin-like protein
1696	 41.29	-1	1717390..1717992	-	200	148270841	-	Tpet_1720	-	TetR family transcriptional regulator
1697	 43.56	0	1718003..1718794	-	263	148270842	-	Tpet_1721	-	hypothetical protein
1698	 44.67	0	1718791..1719672	-	293	148270843	-	Tpet_1722	-	ABC transporter related
1699	 40.05	-1	1719781..1720152	-	123	148270844	-	Tpet_1723	-	hypothetical protein
1700	 40.57	-1	1720154..1720678	-	174	148270845	-	Tpet_1724	-	integral membrane protein-like protein
1701	 47.64	0	1720776..1721537	+	253	148270846	-	Tpet_1725	-	esterase/lipase-like protein
1702	 48.50	0	1721540..1722805	+	421	148270847	-	Tpet_1726	-	major facilitator transporter
1703	 45.07	0	1722830..1723681	+	283	148270848	-	Tpet_1727	-	hypothetical protein
1704	 31.32	-2	1723723..1724169	+	148	148270849	-	Tpet_1728	-	hypothetical protein
1705	 37.24	-2	1724246..1724578	+	110	148270850	-	Tpet_1729	-	hypothetical protein
1706	 48.36	0	1726186..1727436	+	416	148270851	-	Tpet_1731	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
1707	 49.52	+1	1727472..1729244	-	590	148270852	-	Tpet_1732	-	hypothetical protein
1708	 44.32	0	1729299..1731809	-	836	148270853	-	Tpet_1733	-	hypothetical protein
1709	 33.25	-2	1732365..1733600	+	411	148270854	-	Tpet_1735	-	hypothetical protein
1710	 30.48	-2	1733593..1734363	+	256	148270855	-	Tpet_1736	-	hypothetical protein
1711	 37.68	-2	1734674..1735087	-	137	148270856	-	Tpet_1737	-	hypothetical protein
1712	 47.14	0	1736115..1737266	+	383	148270857	-	Tpet_1739	-	ATPase
1713	 50.00	+1	1737281..1737688	-	135	148270858	-	Tpet_1740	-	cupin 2 domain-containing protein
1714	 41.30	-1	1737703..1739598	-	631	148270859	-	Tpet_1741	-	esterase/lipase-like protein
1715	 47.74	0	1739617..1740477	-	286	148270860	-	Tpet_1742	-	2,5-didehydrogluconate reductase
1716	 47.26	0	1740586..1741590	-	334	148270861	-	Tpet_1743	-	aldo/keto reductase
1717	 46.89	0	1741719..1742618	+	299	148270862	-	Tpet_1744	-	AraC-like transcriptional regulator
1718	 46.08	0	1743244..1744545	+	433	148270863	-	Tpet_1746	-	putative PAS/PAC sensor protein
1719	 39.76	-1	1744685..1745011	+	108	148270864	-	Tpet_1747	-	regulatory protein, ArsR
1720	 47.84	0	1745017..1746105	+	362	148270865	-	Tpet_1748	-	permease
1721	 46.91	0	1746119..1746361	+	80	148270866	-	Tpet_1749	-	redox-active disulfide protein 2
1722	 30.30	-2	1746753..1746884	+	43	148270867	-	Tpet_1750	-	hypothetical protein
1723	 34.58	-2	1747153..1749324	+	723	148270868	-	Tpet_1751	-	phosphoadenosine phosphosulfate reductase
1724	 32.18	-2	1749551..1752922	+	1123	148270869	-	Tpet_1752	-	hypothetical protein
1725	 28.32	-2	1752922..1755315	+	797	148270870	-	Tpet_1753	-	hypothetical protein
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.