IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1399	 46.29	0	1405683..1406423	-	246	148270544	-	Tpet_1415	-	FeS assembly ATPase SufC
1400	 44.00	0	1406685..1407059	+	124	148270545	-	Tpet_1416	-	hypothetical protein
1401	 46.67	0	1407040..1407324	-	94	148270546	-	Tpet_1417	-	flagellar hook-basal body complex subunit FliE
1402	 48.70	0	1407331..1407753	-	140	148270547	-	Tpet_1418	-	flagellar basal-body rod protein FlgC
1403	 44.27	0	1407750..1408133	-	127	148270548	-	Tpet_1419	-	flagellar basal-body rod protein FlgB
1404	 44.70	0	1408150..1409178	-	342	148270549	-	Tpet_1420	-	peptide chain release factor 1
1405	 48.75	0	1409196..1410278	-	360	148270550	-	Tpet_1421	-	twitching motility protein
1406	 47.39	0	1410283..1413042	-	919	148270551	-	Tpet_1422	-	isoleucyl-tRNA synthetase
1407	 45.58	0	1413064..1413414	-	116	148270552	-	Tpet_1423	-	response regulator receiver protein
1408	 42.67	-1	1413419..1415581	-	720	148270553	-	Tpet_1424	-	PAS/PAC sensor signal transduction histidine kinase
1409	 42.63	-1	1415628..1416122	-	164	148270554	-	Tpet_1425	-	hypothetical protein
1410	 49.33	+1	1416173..1417597	+	474	148270555	-	Tpet_1426	-	hypothetical protein
1411	 45.11	0	1417647..1417994	+	115	148270556	-	Tpet_1427	-	positive regulator of sigma E, RseC/MucC
1412	 46.44	0	1418006..1418356	+	116	148270557	-	Tpet_1428	-	DRTGG domain-containing protein
1413	 45.55	0	1418353..1419318	+	321	148270558	-	Tpet_1429	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1414	 50.32	+1	1419299..1419610	+	103	148270559	-	Tpet_1430	-	hypothetical protein
1415	 46.92	0	1419607..1420305	+	232	148270560	-	Tpet_1431	-	phosphotransferase domain-containing protein
1416	 46.88	0	1420299..1421708	+	469	148270561	-	Tpet_1432	-	glutamyl-tRNA synthetase
1417	 46.38	0	1421711..1422484	+	257	148270562	-	Tpet_1433	-	alpha/beta hydrolase fold
1418	 42.28	-1	1422486..1423502	+	338	148270563	-	Tpet_1434	-	hypothetical protein
1419	 43.21	0	1423556..1424557	+	333	148270564	-	Tpet_1435	-	hypothetical protein
1420	 50.03	+1	1424554..1426002	-	482	148270565	-	Tpet_1436	-	inosine-5'-monophosphate dehydrogenase
1421	 44.96	0	1426014..1427252	-	412	148270566	-	Tpet_1437	-	peptidase M16 domain-containing protein
1422	 48.28	0	1427224..1429350	-	708	148270567	-	Tpet_1438	-	polynucleotide phosphorylase/polyadenylase
1423	 44.32	0	1429424..1429696	-	90	148270568	-	Tpet_1439	-	ribosomal protein S15
1424	 46.92	0	1430212..1430601	-	129	148270569	-	Tpet_1440	-	hypothetical protein
1425	 52.09	+1	1430654..1431346	-	230	148270570	-	Tpet_1441	-	hypothetical protein
1426	 50.36	+1	1431348..1432322	-	324	148270571	-	Tpet_1442	-	Rieske (2Fe-2S) domain-containing protein
1427	 45.54	0	1432437..1432739	+	100	148270572	-	Tpet_1443	-	hypothetical protein
1428	 43.50	0	1433102..1433878	+	258	148270573	-	Tpet_1444	-	hypothetical protein
1429	 46.55	0	1434131..1435303	-	390	148270574	-	Tpet_1445	-	major facilitator transporter
1430	 44.32	0	1435319..1437247	-	642	148270575	-	Tpet_1446	-	hypothetical protein
1431	 35.52	-2	1437240..1439024	-	594	148270576	-	Tpet_1447	-	radical SAM domain-containing protein
1432	 39.90	-1	1439413..1439610	-	65	148270577	-	Tpet_1448	-	hypothetical protein
1433	 41.46	-1	1439765..1441327	+	520	148270578	-	Tpet_1449	-	hypothetical protein
1434	 33.56	-2	1441437..1441871	-	144	148270579	-	Tpet_1450	-	hypothetical protein
1435	 39.58	-1	1441868..1442251	-	127	148270580	-	Tpet_1451	-	helix-turn-helix domain-containing protein
1436	 32.92	-2	1442374..1442616	-	80	148270581	-	Tpet_1452	-	hypothetical protein
1437	 43.47	0	1442729..1444444	-	571	148270582	-	Tpet_1453	-	ABC transporter related
1438	 45.05	0	1444451..1445167	-	238	148270583	-	Tpet_1454	-	ABC transporter related
1439	 45.76	0	1445177..1445989	-	270	148270584	-	Tpet_1455	-	ABC-2 type transporter
1440	 42.12	-1	1446151..1447515	-	454	148270585	-	Tpet_1456	-	radical SAM domain-containing protein
1441	 44.17	0	1447496..1448824	-	442	148270586	-	Tpet_1457	-	radical SAM domain-containing protein
1442	 41.19	-1	1449120..1449641	-	173	148270587	-	Tpet_1458	-	hypothetical protein
1443	 38.54	-2	1449653..1449844	-	63	148270588	-	Tpet_1459	-	hypothetical protein
1444	 40.86	-1	1449841..1450557	-	238	148270589	-	Tpet_1460	-	ABC transporter related
1445	 35.65	-2	1450674..1451192	-	172	148270590	-	Tpet_1461	-	Fe-S oxidoreductase-like protein
1446	 39.91	-1	1453240..1453467	+	75	148270591	-	Tpet_1463	-	hypothetical protein
1447	 43.66	0	1453730..1455424	-	564	148270592	-	Tpet_1465	-	ABC transporter related
1448	 44.04	0	1455444..1457162	-	572	148270593	-	Tpet_1466	-	ABC transporter related
1449	 31.90	-2	1457168..1458559	-	463	148270594	-	Tpet_1467	-	radical SAM domain-containing protein
1450	 40.80	-1	1458833..1459006	-	57	148270595	-	Tpet_1468	-	hypothetical protein
1451	 39.86	-1	1459193..1460800	+	535	148270596	-	Tpet_1469	-	helix-turn-helix domain-containing protein
1452	 42.01	-1	1460897..1461115	+	72	148270597	-	Tpet_1470	-	hypothetical protein
1453	 39.39	-2	1461112..1461342	+	76	148270598	-	Tpet_1471	-	YcfA family protein
1454	 47.42	0	1461365..1461577	+	70	148270599	-	Tpet_1472	-	hypothetical protein
1455	 43.84	0	1462252..1463022	-	256	148270600	-	Tpet_1474	-	ABC-2 type transporter
1456	 43.54	0	1463475..1463621	-	48	148270601	-	Tpet_1476	-	hypothetical protein
1457	 44.11	0	1463678..1464484	-	268	148270602	-	Tpet_1477	-	ABC-2 type transporter
1458	 43.31	0	1464478..1465239	-	253	148270603	-	Tpet_1478	-	ABC-2 type transporter
1459	 45.56	0	1465190..1465966	-	258	148270604	-	Tpet_1479	-	ABC transporter related
1460	 34.01	-2	1465963..1467291	-	442	148270605	-	Tpet_1480	-	radical SAM domain-containing protein
1461	 41.25	-1	1467477..1467716	-	79	148270606	-	Tpet_1481	-	hypothetical protein
1462	 47.32	0	1468344..1469201	-	285	148270607	-	Tpet_1483	-	aldo/keto reductase
1463	 45.95	0	1469308..1469973	+	221	148270608	-	Tpet_1484	-	ribonuclease H
1464	 49.86	+1	1470142..1470873	-	243	148270609	-	Tpet_1485	-	beta-lactamase domain-containing protein
1465	 46.24	0	1470870..1472954	-	694	148270610	-	Tpet_1486	-	RND efflux transporter
1466	 45.83	0	1473006..1473629	+	207	148270611	-	Tpet_1487	-	methyltransferase type 11
1467	 47.99	0	1473630..1473977	-	115	148270612	-	Tpet_1488	-	cupin 2 domain-containing protein
1468	 46.11	0	1474148..1476355	+	735	148270613	-	Tpet_1489	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1469	 48.96	0	1476464..1477711	-	415	148270614	-	Tpet_1490	-	glycoside hydrolase family protein
1470	 50.00	+1	1477708..1478667	-	319	148270615	-	Tpet_1491	-	ATPase, BadF/BadG/BcrA/BcrD type
1471	 46.56	0	1478714..1479091	+	125	148270616	-	Tpet_1492	-	hypothetical protein
1472	 49.96	+1	1479095..1481368	+	757	148270617	-	Tpet_1493	-	MutS2 family protein
1473	 50.18	+1	1481365..1483359	+	664	148270618	-	Tpet_1494	-	cell division protein FtsA
1474	 49.91	+1	1483374..1484477	-	367	148270619	-	Tpet_1495	-	ABC transporter related
1475	 46.59	0	1484480..1484743	-	87	148270620	-	Tpet_1496	-	prevent-host-death family protein
1476	 47.97	0	1484864..1485601	-	245	148270621	-	Tpet_1497	-	hypothetical protein
1477	 50.31	+1	1485606..1487054	-	482	148270622	gatB	Tpet_1498	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1478	 52.71	+2	1487051..1488469	-	472	148270623	-	Tpet_1499	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1479	 41.19	-1	1488685..1489206	+	173	148270624	-	Tpet_1500	-	hypothetical protein
1480	 47.72	0	1489245..1490384	-	379	148270625	-	Tpet_1501	-	cystathionine gamma-lyase
1481	 50.43	+1	1490435..1491481	-	348	148270626	-	Tpet_1502	-	biotin synthase
1482	 42.68	-1	1491488..1491733	-	81	148270627	-	Tpet_1503	-	hypothetical protein
1483	 48.45	0	1491720..1493141	-	473	148270628	thiH	Tpet_1504	-	thiamine biosynthesis protein ThiH
1484	 49.80	+1	1493141..1493389	-	82	148270629	-	Tpet_1505	-	hypothetical protein
1485	 42.70	-1	1493530..1494693	-	387	148270630	-	Tpet_1506	-	AAA ATPase
1486	 47.39	0	1494918..1495742	+	274	148270631	-	Tpet_1507	-	phosphate binding protein
1487	 52.54	+1	1495792..1496619	+	275	148270632	-	Tpet_1508	-	binding-protein-dependent transport systems inner membrane component
1488	 51.02	+1	1496616..1497446	+	276	148270633	-	Tpet_1509	-	phosphate ABC transporter, inner membrane subunit PstA
1489	 50.79	+1	1497430..1498185	+	251	148270634	-	Tpet_1510	-	phosphate ABC transporter, ATPase subunit
1490	 47.50	0	1498200..1498898	+	232	148270635	-	Tpet_1511	-	phosphate uptake regulator, PhoU
1491	 48.75	0	1498873..1499553	+	226	148270636	-	Tpet_1512	-	two component transcriptional regulator
1492	 45.91	0	1499540..1500493	+	317	148270637	-	Tpet_1513	-	histidine kinase
1493	 50.11	+1	1500486..1502321	-	611	148270638	-	Tpet_1514	-	ATPase-like protein
1494	 46.83	0	1502326..1504059	-	577	148270639	-	Tpet_1515	-	ABC transporter related
1495	 47.27	0	1504034..1505167	-	377	148270640	-	Tpet_1516	-	aminotransferase, class I and II
1496	 48.08	0	1505276..1505926	+	216	148270641	-	Tpet_1517	-	HAD family hydrolase
1497	 50.43	+1	1505910..1507640	-	576	148270642	-	Tpet_1518	-	NAD+ synthetase
1498	 45.66	0	1507606..1508181	-	191	148270643	-	Tpet_1519	-	hypothetical protein
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.