IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1137	 50.24	+1	1176257..1177090	-	277	148270282	-	Tpet_1152	-	ferredoxin--NADP(+) reductase subunit alpha
1138	 47.50	0	1177074..1177694	-	206	148270283	-	Tpet_1153	-	ABC transporter related
1139	 45.19	0	1177712..1178335	-	207	148270284	-	Tpet_1154	-	hypothetical protein
1140	 44.78	0	1178328..1180886	-	852	148270285	-	Tpet_1155	-	SMC domain-containing protein
1141	 46.56	0	1180876..1182024	-	382	148270286	-	Tpet_1156	-	nuclease SbcCD, D subunit
1142	 40.57	-1	1182026..1182412	-	128	148270287	-	Tpet_1157	-	hypothetical protein
1143	 48.66	0	1182409..1184679	-	756	148270288	-	Tpet_1158	-	ATP-dependent protease La
1144	 43.83	0	1184726..1185211	-	161	148270289	-	Tpet_1159	-	hypothetical protein
1145	 43.38	0	1185274..1186059	+	261	148270290	-	Tpet_1160	-	hypothetical protein
1146	 41.58	-1	1186056..1186358	+	100	148270291	-	Tpet_1161	-	hypothetical protein
1147	 45.22	0	1186370..1187707	+	445	148270292	-	Tpet_1162	-	UDP-N-acetylglucosamine pyrophosphorylase
1148	 46.84	0	1187709..1188656	+	315	148270293	-	Tpet_1163	-	ribose-phosphate pyrophosphokinase
1149	 45.74	0	1188687..1189331	+	214	148270294	-	Tpet_1164	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
1150	 45.63	0	1189335..1189895	+	186	148270295	-	Tpet_1165	-	peptidyl-tRNA hydrolase
1151	 38.06	-2	1189892..1190293	+	133	148270296	-	Tpet_1166	-	UvrB/UvrC protein
1152	 46.21	0	1190313..1192673	-	786	148270297	-	Tpet_1167	-	glycoside hydrolase family protein
1153	 46.31	0	1192771..1194588	+	605	148270298	-	Tpet_1168	-	GTP-binding protein LepA
1154	 46.45	0	1194585..1195049	+	154	148270299	-	Tpet_1169	-	hypothetical protein
1155	 43.65	0	1195046..1195714	+	222	148270300	-	Tpet_1170	-	glycerophosphoryl diester phosphodiesterase
1156	 48.63	0	1195721..1196086	+	121	148270301	-	Tpet_1171	-	alkylhydroperoxidase
1157	 46.61	0	1196064..1198745	+	893	148270302	-	Tpet_1172	-	DNA polymerase I
1158	 46.37	0	1198759..1199226	+	155	148270303	-	Tpet_1173	-	CheC domain-containing protein
1159	 43.59	0	1199449..1199799	+	116	148270304	-	Tpet_1174	-	hypothetical protein
1160	 46.74	0	1199796..1200638	+	280	148270305	-	Tpet_1175	-	F0F1 ATP synthase subunit A
1161	 51.94	+1	1200652..1200909	+	85	148270306	-	Tpet_1176	-	F0F1 ATP synthase subunit C
1162	 45.05	0	1200923..1201417	+	164	148270307	-	Tpet_1177	-	ATP synthase F0, B subunit
1163	 44.57	0	1201414..1201965	+	183	148270308	-	Tpet_1178	-	F0F1 ATP synthase subunit delta
1164	 49.93	+1	1201962..1203473	+	503	148270309	-	Tpet_1179	-	F0F1 ATP synthase subunit alpha
1165	 45.64	0	1203480..1204316	+	278	148270310	-	Tpet_1180	-	ATP synthase F1, gamma subunit
1166	 50.04	+1	1204328..1205734	+	468	148270311	-	Tpet_1181	-	F0F1 ATP synthase subunit beta
1167	 46.18	0	1205739..1206065	+	108	148270312	-	Tpet_1182	-	F0F1 ATP synthase subunit epsilon
1168	 42.09	-1	1206242..1206595	+	117	148270313	-	Tpet_1183	-	DegV family protein
1169	 42.90	0	1206577..1206879	+	100	148270314	-	Tpet_1184	-	hypothetical protein
1170	 41.34	-1	1206893..1207429	+	178	148270315	-	Tpet_1185	-	sigma 54 modulation protein/ribosomal protein S30EA
1171	 40.88	-1	1207499..1208863	+	454	148270316	-	Tpet_1186	-	ribonuclease
1172	 43.33	0	1208865..1209464	+	199	148270317	tsf	Tpet_1187	-	elongation factor Ts
1173	 46.98	0	1209526..1210221	+	231	148270318	-	Tpet_1188	-	uridylate kinase
1174	 48.46	0	1210218..1211486	-	422	148270319	-	Tpet_1189	-	major facilitator transporter
1175	 45.98	0	1211490..1212011	-	173	148270320	-	Tpet_1190	-	3H domain-containing protein
1176	 47.10	0	1212032..1213687	-	551	148270321	-	Tpet_1191	-	radical SAM domain-containing protein
1177	 43.49	0	1213684..1214451	-	255	148270322	-	Tpet_1192	-	hypothetical protein
1178	 42.37	-1	1214456..1214809	-	117	148270323	-	Tpet_1193	-	hypothetical protein
1179	 43.51	0	1214799..1215368	-	189	148270324	-	Tpet_1194	-	ECF subfamily RNA polymerase sigma-24 factor
1180	 45.86	0	1215401..1216462	-	353	148270325	-	Tpet_1195	-	alanine racemase domain-containing protein
1181	 45.86	0	1216515..1217312	+	265	148270326	-	Tpet_1196	-	purine nucleoside phosphorylase
1182	 45.91	0	1217313..1218314	+	333	148270327	-	Tpet_1197	-	phosphoesterase domain-containing protein
1183	 40.95	-1	1218277..1221192	+	971	148270328	-	Tpet_1198	-	TPR repeat-containing protein
1184	 45.30	0	1221171..1221947	+	258	148270329	-	Tpet_1199	-	diguanylate cyclase
1185	 45.43	0	1221913..1222656	-	247	148270330	-	Tpet_1200	-	cobyrinic acid a,c-diamide synthase
1186	 42.58	-1	1222667..1223023	-	118	148270331	rplT	Tpet_1201	-	50S ribosomal protein L20
1187	 40.91	-1	1223037..1223234	-	65	148270332	-	Tpet_1202	-	ribosomal protein L35
1188	 42.38	-1	1223249..1223701	-	150	148270333	infC	Tpet_1203	-	translation initiation factor IF-3
1189	 39.74	-1	1224551..1225096	-	181	148270334	-	Tpet_1204	-	diguanylate cyclase
1190	 44.38	0	1225116..1225667	-	183	148270335	-	Tpet_1205	-	hypothetical protein
1191	 44.93	0	1225694..1226314	+	206	148270336	-	Tpet_1206	-	hypothetical protein
1192	 48.72	0	1226293..1227546	+	417	148270337	-	Tpet_1207	-	hydroxypyruvate reductase
1193	 43.02	0	1227536..1228144	-	202	148270338	-	Tpet_1208	-	phosphoribosyltransferase
1194	 46.17	0	1228138..1229220	-	360	148270339	-	Tpet_1209	-	hypothetical protein
1195	 46.85	0	1229233..1229676	-	147	148270340	-	Tpet_1210	-	hypothetical protein
1196	 44.24	0	1229687..1230832	-	381	148270341	-	Tpet_1211	-	type I phosphodiesterase/nucleotide pyrophosphatase
1197	 44.12	0	1230951..1231886	+	311	148270342	-	Tpet_1212	-	Fis family transcriptional regulator
1198	 45.74	0	1231878..1232981	-	367	148270343	prfB	Tpet_1213	-	peptide chain release factor 2
1199	 46.02	0	1232987..1235602	-	871	148270344	secA	Tpet_1214	-	preprotein translocase subunit SecA
1200	 43.85	0	1235604..1236830	-	408	148270345	-	Tpet_1215	-	hypothetical protein
1201	 46.52	0	1236827..1237630	-	267	148270346	-	Tpet_1216	-	hemolysin A
1202	 43.96	0	1237609..1238925	-	438	148270347	-	Tpet_1217	-	WD-40 repeat-containing protein
1203	 48.24	0	1238922..1239659	-	245	148270348	-	Tpet_1218	-	tRNA pseudouridine synthase A
1204	 45.70	0	1239729..1241540	+	603	148270349	-	Tpet_1219	-	Pyrrolo-quinoline quinone
1205	 45.06	0	1241537..1242457	-	306	148270350	-	Tpet_1220	-	signal peptidase I
1206	 46.26	0	1242457..1242804	-	115	148270351	rplS	Tpet_1221	-	50S ribosomal protein L19
1207	 45.94	0	1242807..1243385	-	192	148270352	-	Tpet_1222	-	hypothetical protein
1208	 44.44	0	1243379..1244116	-	245	148270353	-	Tpet_1223	-	tRNA (guanine-N1)-methyltransferase
1209	 43.69	0	1244116..1244646	-	176	148270354	-	Tpet_1224	-	16S rRNA processing protein RimM
1210	 44.30	0	1244651..1244878	-	75	148270355	-	Tpet_1225	-	RNA-binding protein
1211	 47.22	0	1244875..1245162	-	95	148270356	-	Tpet_1226	-	ribosomal protein S16
1212	 45.55	0	1245176..1246477	-	433	148270357	-	Tpet_1227	-	signal recognition particle protein
1213	 46.15	0	1246629..1246901	-	90	148270358	-	Tpet_1228	-	acylphosphatase
1214	 45.85	0	1246876..1247682	-	268	148270359	-	Tpet_1229	-	MscS mechanosensitive ion channel
1215	 46.82	0	1247687..1248487	-	266	148270360	-	Tpet_1230	-	hypothetical protein
1216	 48.20	0	1248484..1249593	-	369	148270361	-	Tpet_1231	-	queuine tRNA-ribosyltransferase
1217	 48.44	0	1249578..1250186	-	202	148270362	-	Tpet_1232	-	formiminotransferase-cyclodeaminase
1218	 47.66	0	1250176..1250922	-	248	148270363	-	Tpet_1233	-	deoxyribose-phosphate aldolase
1219	 46.21	0	1250934..1251461	-	175	148270364	-	Tpet_1234	-	metal dependent phosphohydrolase
1220	 48.58	0	1251479..1252147	-	222	148270365	-	Tpet_1235	-	DNA repair protein RadC
1221	 46.83	0	1252074..1252688	-	204	148270366	-	Tpet_1236	-	maf protein
1222	 45.79	0	1252612..1253157	-	181	148270367	-	Tpet_1237	-	heptaprenyl diphosphate synthase component I
1223	 44.16	0	1253154..1253504	-	116	148270368	-	Tpet_1238	-	hypothetical protein
1224	 47.24	0	1253510..1254559	-	349	148270369	-	Tpet_1239	-	ApbE family lipoprotein
1225	 45.88	0	1254526..1255521	-	331	148270370	-	Tpet_1240	-	radical SAM domain-containing protein
1226	 49.71	+1	1255534..1256058	-	174	148270371	-	Tpet_1241	-	AMMECR1 domain-containing protein
1227	 44.89	0	1256135..1257025	+	296	148270372	-	Tpet_1242	-	hypothetical protein
1228	 46.46	0	1256921..1257796	-	291	148270373	-	Tpet_1243	-	glycosyl transferase family protein
1229	 46.70	0	1257777..1259594	-	605	148270374	-	Tpet_1244	-	polysaccharide biosynthesis protein CapD
1230	 47.55	0	1259588..1260973	-	461	148270375	-	Tpet_1245	-	metal dependent phosphohydrolase
1231	 44.53	0	1261079..1263946	+	955	148270376	-	Tpet_1246	-	single-stranded-DNA-specific exonuclease RecJ
1232	 40.74	-1	1263943..1264563	+	206	148270377	-	Tpet_1247	-	Holliday junction resolvase YqgF
1233	 48.47	0	1264695..1265705	+	336	148270378	-	Tpet_1248	-	cell shape determining protein MreB
1234	 48.40	0	1265710..1266459	+	249	148270379	-	Tpet_1249	-	hypothetical protein
1235	 50.89	+1	1266477..1267262	+	261	148270380	-	Tpet_1250	-	flagellar basal-body rod protein FlgG
1236	 45.91	0	1267287..1268129	+	280	148270381	-	Tpet_1251	-	SAF domain-containing protein
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.