IslandPathversion 1.0

IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.02 STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1010	 45.10	0	1049917..1051038	+	373	148270155	-	Tpet_1021	-	threonyl/alanyl tRNA synthetase, SAD
1011	 47.55	0	1051029..1051823	+	264	148270156	-	Tpet_1022	-	hypothetical protein
1012	 50.06	+1	1051813..1052601	+	262	148270157	-	Tpet_1023	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1013	 49.75	+1	1052598..1053809	+	403	148270158	-	Tpet_1024	-	S-layer domain-containing protein
1014	 50.05	+1	1053906..1054910	+	334	148270159	ruvB	Tpet_1025	-	Holliday junction DNA helicase B
1015	 48.12	0	1054922..1055611	+	229	148270160	-	Tpet_1026	-	alanine racemase domain-containing protein
1016	 45.79	0	1055612..1055908	+	98	148270161	-	Tpet_1027	-	protein of unknown function YGGT
1017	 48.13	0	1055905..1056681	+	258	148270162	-	Tpet_1028	-	ATP-NAD/AcoX kinase
1018	 46.05	0	1056678..1057385	+	235	148270163	-	Tpet_1029	-	phosphate uptake regulator, PhoU
1019	 44.73	0	1057369..1060554	+	1061	148270164	-	Tpet_1030	-	permease YjgP/YjgQ family protein
1020	 47.94	0	1060566..1061921	+	451	148270165	-	Tpet_1031	-	replicative DNA helicase
1021	 49.00	0	1061896..1062795	+	299	148270166	-	Tpet_1032	-	purine nucleoside phosphorylase
1022	 53.66	+2	1062805..1063542	+	245	148270167	-	Tpet_1033	-	zinc/iron permease
1023	 46.58	0	1063548..1064453	+	301	148270168	-	Tpet_1034	-	hypothetical protein
1024	 47.52	0	1064458..1064880	+	140	148270169	-	Tpet_1035	-	ribonuclease III
1025	 46.64	0	1064834..1065562	+	242	148270170	-	Tpet_1036	-	RNA methyltransferase
1026	 48.08	0	1065552..1066331	+	259	148270171	-	Tpet_1037	-	HAD family hydrolase
1027	 49.33	+1	1066311..1067135	-	274	148270172	-	Tpet_1038	-	aldo/keto reductase
1028	 49.71	+1	1067223..1068254	+	343	148270173	-	Tpet_1039	-	threonine aldolase
1029	 48.56	0	1068333..1068956	+	207	148270174	-	Tpet_1040	-	hypothetical protein
1030	 46.65	0	1069117..1070190	+	357	148270175	-	Tpet_1041	-	butyrate kinase
1031	 47.85	0	1070187..1071068	+	293	148270176	-	Tpet_1042	-	phosphate butyryltransferase
1032	 44.75	0	1072141..1072788	+	215	148270177	-	Tpet_1044	-	hypothetical protein
1033	 46.15	0	1072793..1073026	+	77	148270178	-	Tpet_1045	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1034	 49.25	0	1073039..1074100	+	353	148270179	-	Tpet_1046	-	2-ketoisovalerate ferredoxin reductase
1035	 48.25	0	1074091..1074834	+	247	148270180	-	Tpet_1047	-	thiamine pyrophosphate binding domain-containing protein
1036	 45.96	0	1074836..1075405	+	189	148270181	-	Tpet_1048	-	pyruvate ferredoxin/flavodoxin oxidoreductase
1037	 48.62	0	1075528..1077522	-	664	148270182	-	Tpet_1049	-	excinuclease ABC subunit B
1038	 50.42	+1	1077634..1079541	+	635	148270183	-	Tpet_1050	-	transketolase
1039	 44.80	0	1079615..1080172	+	185	148270184	-	Tpet_1051	-	translation elongation factor P
1040	 43.17	0	1080188..1080553	+	121	148270185	-	Tpet_1052	-	hypothetical protein
1041	 43.12	0	1080575..1081003	+	142	148270186	nusB	Tpet_1053	-	transcription antitermination protein NusB
1042	 49.54	+1	1081015..1082643	+	542	148270187	-	Tpet_1054	-	formate--tetrahydrofolate ligase
1043	 47.30	0	1082657..1083472	+	271	148270188	-	Tpet_1055	-	methenyltetrahydrofolate cyclohydrolase
1044	 45.99	0	1083469..1084653	+	394	148270189	-	Tpet_1056	-	exodeoxyribonuclease VII, large subunit
1045	 43.42	0	1084650..1084877	+	75	148270190	-	Tpet_1057	-	exodeoxyribonuclease VII, small subunit
1046	 48.17	0	1084840..1086666	+	608	148270191	-	Tpet_1058	-	1-deoxy-D-xylulose-5-phosphate synthase
1047	 45.15	0	1086663..1086992	+	109	148270192	-	Tpet_1059	-	hypothetical protein
1048	 45.56	0	1087009..1088595	+	528	148270193	-	Tpet_1060	-	Dak phosphatase
1049	 42.67	-1	1088592..1090208	+	538	148270194	-	Tpet_1061	-	TPR repeat-containing protein
1050	 49.67	+1	1090211..1091416	+	401	148270195	-	Tpet_1062	-	cofactor-independent phosphoglycerate mutase
1051	 44.39	0	1091413..1092588	+	391	148270196	-	Tpet_1063	-	ComEC/Rec2-related protein
1052	 43.14	0	1092503..1092961	-	152	148270197	-	Tpet_1064	-	ferric uptake regulator family protein
1053	 48.12	0	1092981..1094015	-	344	148270198	nusA	Tpet_1065	-	transcription elongation factor NusA
1054	 43.27	0	1094028..1094480	-	150	148270199	-	Tpet_1066	-	hypothetical protein
1055	 48.37	0	1094924..1096153	+	409	148270200	-	Tpet_1067	-	argininosuccinate synthase
1056	 45.78	0	1096150..1097346	+	398	148270201	-	Tpet_1068	-	argininosuccinate lyase
1057	 48.73	0	1097343..1098362	+	339	148270202	argC	Tpet_1069	-	N-acetyl-gamma-glutamyl-phosphate reductase
1058	 50.42	+1	1098379..1099572	+	397	148270203	argJ	Tpet_1070	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1059	 49.82	+1	1099569..1100417	+	282	148270204	-	Tpet_1071	-	acetylglutamate kinase
1060	 48.88	0	1100420..1101577	+	385	148270205	-	Tpet_1072	-	acetylornithine aminotransferase
1061	 40.98	-1	1101597..1101779	-	60	148270206	-	Tpet_1073	-	hypothetical protein
1062	 41.87	-1	1102974..1103219	+	81	148270207	-	Tpet_1075	-	regulatory protein, ArsR
1063	 47.83	0	1103216..1103560	+	114	148270208	-	Tpet_1076	-	hypothetical protein
1064	 42.49	-1	1103915..1104460	-	181	148270209	-	Tpet_1077	-	hypothetical protein
1065	 40.49	-1	1104538..1105389	-	283	148270210	-	Tpet_1078	-	diguanylate cyclase
1066	 34.75	-2	1110223..1110504	-	93	148270211	-	Tpet_1081	-	CRISPR-associated Cas2 family protein
1067	 36.38	-2	1110514..1111497	-	327	148270212	-	Tpet_1082	-	CRISPR-associated Cas1 family protein
1068	 37.19	-2	1111507..1112025	-	172	148270213	-	Tpet_1083	-	CRISPR-associated Cas4 family protein
1069	 41.14	-1	1112028..1114319	-	763	148270214	-	Tpet_1084	-	CRISPR-associated helicase Cas3
1070	 39.34	-2	1114322..1115104	-	260	148270215	-	Tpet_1085	-	CRISPR-associated Cas5 family protein
1071	 39.54	-1	1115101..1116099	-	332	148270216	-	Tpet_1086	-	CRISPR-associated autoregulator DevR family protein protein
1072	 35.51	-2	1116092..1117285	-	397	148270217	-	Tpet_1087	-	hypothetical protein
1073	 39.53	-1	1117624..1118349	-	241	148270218	-	Tpet_1088	-	CRISPR-associated Cas family protein
1074	 48.43	0	1119282..1119632	+	116	148270219	-	Tpet_1089	-	heat shock protein DnaJ domain-containing protein
1075	 42.68	-1	1119623..1120093	+	156	148270220	-	Tpet_1090	-	hypothetical protein
1076	 40.20	-1	1120093..1120908	+	271	148270221	-	Tpet_1091	-	hypothetical protein
1077	 49.48	+1	1120890..1121465	-	191	148270222	-	Tpet_1092	-	hypothetical protein
1078	 40.96	-1	1121438..1122577	-	379	148270223	-	Tpet_1093	-	CRISPR-associated RAMP Csm5 family protein
1079	 46.15	0	1122574..1123431	-	285	148270224	-	Tpet_1094	-	CRISPR-associated RAMP Csm4 family protein
1080	 46.77	0	1123449..1124192	-	247	148270225	-	Tpet_1095	-	CRISPR-associated RAMP Csm3 family protein
1081	 41.37	-1	1124206..1124628	-	140	148270226	-	Tpet_1096	-	CRISPR-associated Csm2 family protein
1082	 43.39	0	1124643..1126850	-	735	148270227	-	Tpet_1097	-	metal dependent phosphohydrolase
1083	 37.46	-2	1126847..1128493	-	548	148270228	-	Tpet_1098	-	hypothetical protein
1084	 40.90	-1	1128498..1129250	-	250	148270229	-	Tpet_1099	-	CRISPR-associated Cas family protein
1085	 46.90	0	1129533..1129952	+	139	148270230	-	Tpet_1100	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1086	 46.93	0	1129967..1130341	+	124	148270231	-	Tpet_1101	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1087	 49.42	+1	1130372..1132969	-	865	148270232	-	Tpet_1102	-	valyl-tRNA synthetase
1088	 49.10	0	1133001..1133501	-	166	148270233	-	Tpet_1103	-	chromate transporter
1089	 50.39	+1	1133505..1134020	-	171	148270234	-	Tpet_1104	-	chromate transporter
1090	 50.73	+1	1134133..1135638	+	501	148270235	guaA	Tpet_1105	-	bifunctional GMP synthase/glutamine amidotransferase protein
1091	 46.63	0	1135643..1136266	+	207	148270236	-	Tpet_1106	-	N-glycosylase/DNA lyase
1092	 48.44	0	1136278..1137204	+	308	148270237	-	Tpet_1107	-	HflK protein
1093	 47.54	0	1137201..1138052	+	283	148270238	-	Tpet_1108	-	HflC protein
1094	 44.57	0	1138065..1138874	-	269	148270239	-	Tpet_1109	-	hypothetical protein
1095	 49.80	+1	1138849..1139346	-	165	148270240	-	Tpet_1110	-	riboflavin synthase
1096	 46.10	0	1139343..1140509	-	388	148270241	-	Tpet_1111	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1097	 49.36	+1	1140484..1141032	-	182	148270242	-	Tpet_1112	-	riboflavin synthase subunit alpha
1098	 45.46	0	1141041..1142087	-	348	148270243	-	Tpet_1113	-	riboflavin biosynthesis protein RibD
1099	 47.48	0	1142336..1142653	-	105	148270244	-	Tpet_1114	-	diguanylate cyclase
1100	 48.47	0	1142638..1143846	-	402	148270245	-	Tpet_1115	-	IS605 family transposase OrfB
1101	 42.82	0	1143831..1144715	-	294	148270246	-	Tpet_1116	-	putative metal dependent phosphohydrolase
1102	 47.54	0	1144737..1144919	-	60	148270247	-	Tpet_1117	-	hypothetical protein
1103	 47.99	0	1144970..1145242	-	90	148270248	-	Tpet_1118	-	hypothetical protein
1104	 47.48	0	1145247..1145960	-	237	148270249	-	Tpet_1119	-	hypothetical protein
1105	 45.77	0	1146023..1147180	+	385	148270250	-	Tpet_1120	-	hypothetical protein
1106	 42.91	0	1147167..1147427	+	86	148270251	-	Tpet_1121	-	FlhB domain-containing protein
1107	 44.30	0	1148082..1148537	+	151	148270252	-	Tpet_1122	-	hypothetical protein
1108	 47.22	0	1148538..1149005	-	155	148270253	-	Tpet_1123	-	hypothetical protein
1109	 50.49	+1	1149014..1150348	-	444	148270254	-	Tpet_1124	-	xylose isomerase
46.02	MEAN

3.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.