IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.32   STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
913	 63.46	0	862284..862595	+	103	148239249	-	SynWH7803_0913	-	hypothetical protein
914	 64.78	0	863199..863939	-	246	148239250	-	SynWH7803_0914	-	hypothetical protein
915	 65.02	0	864023..864631	+	202	148239251	-	SynWH7803_0915	-	hypothetical protein
916	 65.10	0	864649..865989	-	446	148239252	uraA	SynWH7803_0916	-	Uracil permease
917	 63.04	0	866005..866280	+	91	148239253	-	SynWH7803_0917	-	hypothetical protein
918	 61.84	0	866355..866561	+	68	148239254	-	SynWH7803_0918	-	hypothetical protein
919	 66.12	+1	866705..867442	+	245	148239255	-	SynWH7803_0919	-	hypothetical protein
920	 60.73	0	867498..867716	+	72	148239256	-	SynWH7803_0920	-	hypothetical protein
921	 65.75	+1	867718..868155	+	145	148239257	-	SynWH7803_0921	-	metal-binding protein
922	 68.18	+1	868779..868976	+	65	148239258	-	SynWH7803_0922	-	hypothetical protein
923	 63.28	0	869001..869708	+	235	148239259	-	SynWH7803_0923	-	two component system response regulator
924	 62.13	0	869715..870155	-	146	148239260	-	SynWH7803_0924	-	hypothetical protein
925	 63.40	0	870299..870451	-	50	148239261	-	SynWH7803_0925	-	hypothetical protein
926	 60.32	0	870511..870699	-	62	148239262	-	SynWH7803_0926	-	hypothetical protein
927	 46.73	-2	871055..871375	-	106	148239263	-	SynWH7803_0927	-	hypothetical protein
928	 58.90	0	871421..872167	-	248	148239264	-	SynWH7803_0928	-	beta-carotene ketolase
929	 59.35	0	872157..873113	-	318	148239265	-	SynWH7803_0929	-	carotenoid binding protein
930	 62.87	0	873217..873900	-	227	148239266	-	SynWH7803_0930	-	hydrolase of the alpha/beta-hydrolase fold
931	 60.68	0	873921..874154	-	77	148239267	hli	SynWH7803_0931	-	high light inducible protein
932	 53.88	-1	874332..874550	+	72	148239268	-	SynWH7803_0932	-	hypothetical protein
933	 43.50	-2	874878..875231	-	117	148239269	-	SynWH7803_0933	-	hypothetical protein
934	 60.00	0	875397..875651	-	84	148239270	-	SynWH7803_0934	-	hypothetical protein
935	 56.44	0	875872..876096	+	74	148239271	-	SynWH7803_0935	-	hypothetical protein
936	 63.45	0	876084..877325	+	413	148239272	-	SynWH7803_0936	-	glycosyl transferase family protein
937	 62.69	0	877292..877492	-	66	148239273	hli	SynWH7803_0937	-	high light inducible protein
938	 62.93	0	877554..878168	-	204	148239274	-	SynWH7803_0938	-	hypothetical protein
939	 67.03	+1	878198..878473	+	91	148239275	-	SynWH7803_0939	-	hypothetical protein
940	 61.17	0	878481..878789	-	102	148239276	-	SynWH7803_0940	-	hypothetical protein
941	 63.47	0	878859..879077	+	72	148239277	-	SynWH7803_0941	-	hypothetical protein
942	 63.64	0	879128..879325	+	65	148239278	-	SynWH7803_0942	-	hypothetical protein
943	 63.33	0	879356..879625	+	89	148239279	-	SynWH7803_0943	-	hypothetical protein
944	 59.33	0	879671..880120	+	149	148239280	-	SynWH7803_0944	-	hypothetical protein
945	 63.67	0	880071..881273	-	400	148239281	-	SynWH7803_0945	-	hypothetical protein
946	 60.16	0	881285..881530	+	81	148239282	-	SynWH7803_0946	-	hypothetical protein
947	 61.06	0	881730..882068	+	112	148239283	-	SynWH7803_0947	-	macrophage migration inhibitory factor domain-containing protein
948	 50.83	-1	882187..887421	+	1744	148239284	-	SynWH7803_0948	-	putative multicopper oxidase
949	 59.81	0	887772..888296	+	174	148239285	dcd	SynWH7803_0949	-	deoxycytidine triphosphate deaminase
950	 62.29	0	888309..889130	-	273	148239286	-	SynWH7803_0950	-	short-chain dehydrogenase/reductase family protein
951	 66.29	+1	889134..889658	-	174	148239287	sodC	SynWH7803_0951	-	superoxide dismutase
952	 64.20	0	890307..891158	+	283	148239288	-	SynWH7803_0952	-	metallo-beta-lactamase superfamily hydrolase
953	 58.25	0	891172..891456	+	94	148239289	-	SynWH7803_0953	-	hypothetical protein
954	 63.16	0	891461..891688	-	75	148239290	-	SynWH7803_0954	-	hypothetical protein
955	 56.79	0	891727..891969	+	80	148239291	-	SynWH7803_0955	-	hypothetical protein
956	 61.85	0	892042..892311	+	89	148239292	-	SynWH7803_0956	-	hypothetical protein
957	 62.08	0	892462..892962	-	166	148239293	-	SynWH7803_0957	-	hypothetical protein
958	 61.32	0	892949..893266	-	105	148239294	-	SynWH7803_0958	-	hypothetical protein
959	 62.14	0	893263..893505	-	80	148239295	-	SynWH7803_0959	-	hypothetical protein
960	 64.88	0	893599..893934	+	111	148239296	-	SynWH7803_0960	-	hypothetical protein
961	 64.73	0	894087..894293	+	68	148239297	-	SynWH7803_0961	-	hypothetical protein
962	 62.28	0	894337..894678	+	113	148239298	-	SynWH7803_0962	-	hypothetical protein
963	 62.50	0	894793..895056	-	87	148239299	-	SynWH7803_0963	-	hypothetical protein
964	 57.14	0	895058..895225	-	55	148239300	-	SynWH7803_0964	-	hypothetical protein
965	 59.62	0	895314..895526	-	70	148239301	-	SynWH7803_0965	-	hypothetical protein
966	 63.64	0	895618..896277	-	219	148239302	-	SynWH7803_0966	-	putative monovalent cation/H+ antiporter subunit B
967	 59.18	0	896274..896807	-	177	148239303	-	SynWH7803_0967	-	subunit of the multisubunit Na+/H+ antiporter
968	 60.19	0	896797..897120	-	107	148239304	-	SynWH7803_0968	-	multisubunit Na+/H+ antiporter MnhG subunit
969	 61.45	0	897117..897365	-	82	148239305	-	SynWH7803_0969	-	putative subunit of the multisubunit Na+/H+ antiporter
970	 63.78	0	897362..897811	-	149	148239306	-	SynWH7803_0970	-	putative subunit of the multisubunit Na+/H+ antiporter
971	 64.16	0	897808..899322	-	504	148239307	-	SynWH7803_0971	-	multisubunit Na+/H+ antiporter MnhD subunit
972	 63.36	0	899322..899684	-	120	148239308	-	SynWH7803_0972	-	putative monovalent cation/H+ antiporter subunit C
973	 60.47	0	899685..900701	-	338	148239309	-	SynWH7803_0973	-	hypothetical protein
974	 58.00	0	901091..901390	+	99	148239310	-	SynWH7803_0974	-	hypothetical protein
975	 62.07	0	901418..901591	+	57	148239311	-	SynWH7803_0975	-	hypothetical protein
976	 45.06	-2	902246..902407	+	53	148239312	-	SynWH7803_0976	-	hypothetical protein
977	 60.16	0	902492..902875	+	127	148239313	-	SynWH7803_0977	-	hypothetical protein
978	 61.16	0	902916..903878	+	320	148239314	-	SynWH7803_0978	-	ABC-type Mn2+ transport system, periplasmic component
979	 59.73	0	903875..904624	+	249	148239315	-	SynWH7803_0979	-	ABC-type Mn2+ transport system, ATPase component
980	 61.53	0	904635..905471	+	278	148239316	-	SynWH7803_0980	-	ABC-type Mn2+ transport system permease component
981	 65.84	+1	905462..906553	-	363	148239317	-	SynWH7803_0981	-	DMT family permease
982	 60.91	0	906659..907249	+	196	148239318	-	SynWH7803_0982	-	hypothetical protein
983	 62.02	0	907359..907616	+	85	148239319	-	SynWH7803_0983	-	hypothetical protein
984	 59.65	0	907707..908048	+	113	148239320	petJ	SynWH7803_0984	-	cytochrome C6
985	 65.08	0	908139..909023	+	294	148239321	-	SynWH7803_0985	-	permease
986	 65.51	+1	909039..909728	+	229	148239322	-	SynWH7803_0986	-	hypothetical protein
987	 66.30	+1	909725..911092	+	455	148239323	-	SynWH7803_0987	-	hypothetical protein
988	 62.68	0	911132..911833	+	233	148239324	-	SynWH7803_0988	-	ABC-type Mn2+/Zn2+ transport system ATPase component
989	 62.34	0	911826..912611	+	261	148239325	znuC	SynWH7803_0989	-	ABC-type Mn2+/Zn2+ transport system permease component
990	 58.54	0	912729..913565	+	278	148239326	-	SynWH7803_0990	-	ABC-type Mn2+/Zn2+ transport system periplasmic component
991	 55.61	0	913673..914260	-	195	148239327	-	SynWH7803_0991	-	hypothetical protein
992	 53.12	-1	914351..914830	+	159	148239328	-	SynWH7803_0992	-	hypothetical protein
993	 54.80	-1	914907..916490	-	527	148239329	-	SynWH7803_0993	-	porin-like protein
994	 63.62	0	916611..917267	-	218	148239330	hupE	SynWH7803_0994	-	hydrogenase accessory membrane protein
995	 62.56	0	917408..917602	-	64	148239331	-	SynWH7803_0995	-	hypothetical protein
996	 62.30	0	917705..918529	+	274	148239332	-	SynWH7803_0996	-	hypothetical protein
997	 63.29	0	918574..919284	+	236	148239333	-	SynWH7803_0997	-	hypothetical protein
998	 62.94	0	919301..919702	-	133	148239334	-	SynWH7803_0998	-	redox protein
999	 51.27	-1	919725..920354	-	209	148239335	-	SynWH7803_0999	-	hypothetical protein
1000	 51.44	-1	920361..920603	-	80	148239336	-	SynWH7803_1000	-	hypothetical protein
1001	 63.33	0	920810..921529	+	239	148239337	-	SynWH7803_1001	-	hypothetical protein
1002	 67.28	+1	921529..922671	+	380	148239338	-	SynWH7803_1002	-	dehydrogenase
1003	 64.11	0	922671..923765	+	364	148239339	-	SynWH7803_1003	-	chalcone synthase
1004	 63.13	0	923826..924278	+	150	148239340	-	SynWH7803_1004	-	hypothetical protein
1005	 55.84	0	924296..924526	+	76	148239341	-	SynWH7803_1005	-	hypothetical protein
1006	 63.59	0	924546..925844	-	432	148239342	-	SynWH7803_1006	-	putative cytochrome P450
1007	 62.58	0	925897..926214	+	105	148239343	-	SynWH7803_1007	-	hypothetical protein
1008	 59.74	0	926211..926441	+	76	148239344	-	SynWH7803_1008	-	hypothetical protein
1009	 54.07	-1	926677..926946	-	89	148239345	-	SynWH7803_1009	-	hypothetical protein
1010	 56.14	0	926943..927170	-	75	148239346	-	SynWH7803_1010	-	hypothetical protein
1011	 52.31	-1	927176..927391	-	71	148239347	-	SynWH7803_1011	-	hypothetical protein
1012	 56.93	0	927827..928165	+	112	148239348	-	SynWH7803_1012	-	hypothetical protein
60.32	MEAN

4.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.