IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
860	 56.93	0	818775..819041	+	88	148239196	-	SynWH7803_0860	-	hypothetical protein
861	 57.95	0	819048..819437	-	129	148239197	-	SynWH7803_0861	-	hypothetical protein
862	 60.08	0	819528..820013	+	161	148239198	-	SynWH7803_0862	-	hypothetical protein
863	 62.02	0	820040..820405	-	121	148239199	-	SynWH7803_0863	-	hypothetical protein
864	 59.86	0	820529..820954	+	141	148239200	-	SynWH7803_0864	-	hypothetical protein
865	 61.21	0	820964..821128	+	54	148239201	-	SynWH7803_0865	-	hypothetical protein
866	 68.03	+1	821141..822976	-	611	148239202	ggt	SynWH7803_0866	-	gamma-glutamyltranspeptidase
867	 64.77	0	822975..824606	+	543	148239203	-	SynWH7803_0867	-	zeta-carotene desaturase
868	 64.31	0	824617..825591	+	324	148239204	-	SynWH7803_0868	-	light-dependent protochlorophyllide oxido-reductase
869	 62.88	0	825613..827301	+	562	148239205	pdc	SynWH7803_0869	-	indole-3-pyruvate decarboxylase
870	 47.98	-2	827442..830492	+	1016	148239206	-	SynWH7803_0870	-	hypothetical protein
871	 64.82	0	830660..831907	-	415	148239207	-	SynWH7803_0871	-	alcohol dehydrogenase, class IV
872	 56.79	0	831904..832065	-	53	148239208	-	SynWH7803_0872	-	hypothetical protein
873	 58.81	0	832319..832738	+	139	148239209	-	SynWH7803_0873	-	hypothetical protein
874	 53.24	-1	832776..836567	-	1263	148239210	-	SynWH7803_0874	-	parallel beta-helix repeat-containing pectin lyase
875	 56.25	0	836779..837018	+	79	148239211	-	SynWH7803_0875	-	hypothetical protein
876	 67.24	+1	837002..837880	-	292	148239212	-	SynWH7803_0876	-	esterase
877	 65.23	+1	837904..839016	-	370	148239213	adhC	SynWH7803_0877	-	glutathione-dependent formaldehyde dehydrogenase
878	 55.64	0	839110..839526	+	138	148239214	-	SynWH7803_0878	-	hypothetical protein
879	 58.03	0	839559..839975	-	138	148239215	-	SynWH7803_0879	-	hypothetical protein
880	 66.40	+1	840061..840432	+	123	148239216	-	SynWH7803_0880	-	hypothetical protein
881	 58.94	0	840432..840677	+	81	148239217	-	SynWH7803_0881	-	hypothetical protein
882	 55.90	0	840800..842731	+	643	148239218	-	SynWH7803_0882	-	hypothetical protein
883	 54.50	-1	842855..843043	-	62	148239219	-	SynWH7803_0883	-	hypothetical protein
884	 62.50	0	843142..843405	+	87	148239220	-	SynWH7803_0884	-	hypothetical protein
885	 68.88	+1	843415..844047	-	210	148239221	-	SynWH7803_0885	-	thiopurine S-methyltransferase
886	 63.17	0	844186..844557	+	123	148239222	-	SynWH7803_0886	-	hypothetical protein
887	 52.54	-1	844626..844802	-	58	148239223	-	SynWH7803_0887	-	hypothetical protein
888	 50.28	-2	844859..845035	-	58	148239224	-	SynWH7803_0888	-	hypothetical protein
889	 50.63	-1	845619..845936	+	105	148239225	-	SynWH7803_0889	-	hypothetical protein
890	 61.62	0	846011..846406	-	131	148239226	-	SynWH7803_0890	-	hypothetical protein
891	 58.57	0	846423..846632	-	69	148239227	-	SynWH7803_0891	-	hypothetical protein
892	 60.42	0	846668..847771	+	367	148239228	-	SynWH7803_0892	-	protein kinase-like protein
893	 66.43	+1	847793..848644	-	283	148239229	phoC	SynWH7803_0893	-	acid phosphatase
894	 51.92	-1	848761..849072	+	103	148239230	-	SynWH7803_0894	-	hypothetical protein
895	 63.53	0	849161..849733	+	190	148239231	-	SynWH7803_0895	-	hypothetical protein
896	 65.31	+1	849678..850559	-	293	148239232	-	SynWH7803_0896	-	hypothetical protein
897	 48.38	-2	850845..851183	-	112	148239233	-	SynWH7803_0897	-	hypothetical protein
898	 45.60	-2	851251..851568	-	105	148239234	-	SynWH7803_0898	-	hypothetical protein
899	 53.07	-1	851679..852362	+	227	148239235	-	SynWH7803_0899	-	two component system response regulator
900	 45.71	-2	852889..853284	-	131	148239236	-	SynWH7803_0900	-	two-component sensor histidine kinase
901	 54.39	-1	853538..854140	+	200	148239237	-	SynWH7803_0901	-	nuclease-like protein
902	 43.67	-2	854410..854709	+	99	148239238	-	SynWH7803_0902	-	hypothetical protein
903	 46.03	-2	854821..855852	-	343	148239239	-	SynWH7803_0903	-	hypothetical protein
904	 44.80	-2	855868..856425	-	185	148239240	-	SynWH7803_0904	-	DnaJ domain-containing protein
905	 46.14	-2	857855..858541	-	228	148239241	-	SynWH7803_0905	-	hypothetical protein
906	 59.82	0	858649..858867	-	72	148239242	-	SynWH7803_0906	-	hypothetical protein
907	 59.14	0	859193..859471	-	92	148239243	-	SynWH7803_0907	-	hypothetical protein
908	 53.95	-1	859456..859746	-	96	148239244	-	SynWH7803_0908	-	hypothetical protein
909	 43.77	-2	860017..860361	-	114	148239245	-	SynWH7803_0909	-	hypothetical protein
910	 42.42	-2	860372..861163	-	263	148239246	-	SynWH7803_0910	-	hypothetical protein
911	 44.67	-2	861160..861891	-	243	148239247	-	SynWH7803_0911	-	hypothetical protein
912	 57.00	0	861981..862280	-	99	148239248	-	SynWH7803_0912	-	hypothetical protein
913	 63.46	0	862284..862595	+	103	148239249	-	SynWH7803_0913	-	hypothetical protein
914	 64.78	0	863199..863939	-	246	148239250	-	SynWH7803_0914	-	hypothetical protein
915	 65.02	0	864023..864631	+	202	148239251	-	SynWH7803_0915	-	hypothetical protein
916	 65.10	0	864649..865989	-	446	148239252	uraA	SynWH7803_0916	-	Uracil permease
917	 63.04	0	866005..866280	+	91	148239253	-	SynWH7803_0917	-	hypothetical protein
918	 61.84	0	866355..866561	+	68	148239254	-	SynWH7803_0918	-	hypothetical protein
919	 66.12	+1	866705..867442	+	245	148239255	-	SynWH7803_0919	-	hypothetical protein
920	 60.73	0	867498..867716	+	72	148239256	-	SynWH7803_0920	-	hypothetical protein
921	 65.75	+1	867718..868155	+	145	148239257	-	SynWH7803_0921	-	metal-binding protein
922	 68.18	+1	868779..868976	+	65	148239258	-	SynWH7803_0922	-	hypothetical protein
923	 63.28	0	869001..869708	+	235	148239259	-	SynWH7803_0923	-	two component system response regulator
924	 62.13	0	869715..870155	-	146	148239260	-	SynWH7803_0924	-	hypothetical protein
925	 63.40	0	870299..870451	-	50	148239261	-	SynWH7803_0925	-	hypothetical protein
926	 60.32	0	870511..870699	-	62	148239262	-	SynWH7803_0926	-	hypothetical protein
927	 46.73	-2	871055..871375	-	106	148239263	-	SynWH7803_0927	-	hypothetical protein
928	 58.90	0	871421..872167	-	248	148239264	-	SynWH7803_0928	-	beta-carotene ketolase
929	 59.35	0	872157..873113	-	318	148239265	-	SynWH7803_0929	-	carotenoid binding protein
930	 62.87	0	873217..873900	-	227	148239266	-	SynWH7803_0930	-	hydrolase of the alpha/beta-hydrolase fold
931	 60.68	0	873921..874154	-	77	148239267	hli	SynWH7803_0931	-	high light inducible protein
932	 53.88	-1	874332..874550	+	72	148239268	-	SynWH7803_0932	-	hypothetical protein
933	 43.50	-2	874878..875231	-	117	148239269	-	SynWH7803_0933	-	hypothetical protein
934	 60.00	0	875397..875651	-	84	148239270	-	SynWH7803_0934	-	hypothetical protein
935	 56.44	0	875872..876096	+	74	148239271	-	SynWH7803_0935	-	hypothetical protein
936	 63.45	0	876084..877325	+	413	148239272	-	SynWH7803_0936	-	glycosyl transferase family protein
937	 62.69	0	877292..877492	-	66	148239273	hli	SynWH7803_0937	-	high light inducible protein
938	 62.93	0	877554..878168	-	204	148239274	-	SynWH7803_0938	-	hypothetical protein
939	 67.03	+1	878198..878473	+	91	148239275	-	SynWH7803_0939	-	hypothetical protein
940	 61.17	0	878481..878789	-	102	148239276	-	SynWH7803_0940	-	hypothetical protein
941	 63.47	0	878859..879077	+	72	148239277	-	SynWH7803_0941	-	hypothetical protein
942	 63.64	0	879128..879325	+	65	148239278	-	SynWH7803_0942	-	hypothetical protein
943	 63.33	0	879356..879625	+	89	148239279	-	SynWH7803_0943	-	hypothetical protein
944	 59.33	0	879671..880120	+	149	148239280	-	SynWH7803_0944	-	hypothetical protein
945	 63.67	0	880071..881273	-	400	148239281	-	SynWH7803_0945	-	hypothetical protein
946	 60.16	0	881285..881530	+	81	148239282	-	SynWH7803_0946	-	hypothetical protein
947	 61.06	0	881730..882068	+	112	148239283	-	SynWH7803_0947	-	macrophage migration inhibitory factor domain-containing protein
948	 50.83	-1	882187..887421	+	1744	148239284	-	SynWH7803_0948	-	putative multicopper oxidase
949	 59.81	0	887772..888296	+	174	148239285	dcd	SynWH7803_0949	-	deoxycytidine triphosphate deaminase
950	 62.29	0	888309..889130	-	273	148239286	-	SynWH7803_0950	-	short-chain dehydrogenase/reductase family protein
951	 66.29	+1	889134..889658	-	174	148239287	sodC	SynWH7803_0951	-	superoxide dismutase
952	 64.20	0	890307..891158	+	283	148239288	-	SynWH7803_0952	-	metallo-beta-lactamase superfamily hydrolase
953	 58.25	0	891172..891456	+	94	148239289	-	SynWH7803_0953	-	hypothetical protein
954	 63.16	0	891461..891688	-	75	148239290	-	SynWH7803_0954	-	hypothetical protein
955	 56.79	0	891727..891969	+	80	148239291	-	SynWH7803_0955	-	hypothetical protein
956	 61.85	0	892042..892311	+	89	148239292	-	SynWH7803_0956	-	hypothetical protein
957	 62.08	0	892462..892962	-	166	148239293	-	SynWH7803_0957	-	hypothetical protein
958	 61.32	0	892949..893266	-	105	148239294	-	SynWH7803_0958	-	hypothetical protein
959	 62.14	0	893263..893505	-	80	148239295	-	SynWH7803_0959	-	hypothetical protein
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.