IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.32   STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
769	 57.99	0	753651..754745	+	364	148239105	-	SynWH7803_0769	-	hypothetical protein
770	 61.35	0	754735..756201	-	488	148239106	-	SynWH7803_0770	-	hypothetical protein
771	 62.32	0	756222..758339	-	705	148239107	prlC	SynWH7803_0771	-	oligopeptidase A
772	 59.92	0	758346..759917	-	523	148239108	ndhD	SynWH7803_0772	-	NAD(P)H-quinone oxidoreductase subunit 4
773	 64.45	0	759974..760921	-	315	148239109	thrB	SynWH7803_0773	-	homoserine kinase
774	 64.07	0	760936..762012	-	358	148239110	glk	SynWH7803_0774	-	glucokinase
775	 64.05	0	762102..762521	-	139	148239111	-	SynWH7803_0775	-	hypothetical protein
776	 61.92	0	762521..764353	-	610	148239112	thrS	SynWH7803_0776	-	threonyl-tRNA synthetase
777	 64.15	0	764382..764699	+	105	148239113	-	SynWH7803_0777	-	hypothetical protein
778	 62.88	0	764696..765091	+	131	148239114	-	SynWH7803_0778	-	hypothetical protein
779	 63.62	0	765098..765721	-	207	148239115	-	SynWH7803_0779	-	muramidase
780	 61.93	0	766037..767050	-	337	148239116	trpS	SynWH7803_0780	-	tryptophanyl-tRNA synthetase
781	 67.98	+1	767054..767587	-	177	148239117	-	SynWH7803_0781	-	hypothetical protein
782	 60.15	0	767692..768597	-	301	148239118	-	SynWH7803_0782	-	Co/Zn/Cd cation transporter
783	 63.21	0	768751..770109	+	452	148239119	-	SynWH7803_0783	-	hypothetical protein
784	 58.77	0	770274..771350	+	358	148239120	psbA	SynWH7803_0784	-	photosystem II protein D1
785	 51.42	-1	771442..772110	-	222	148239121	-	SynWH7803_0785	-	hypothetical protein
786	 48.72	-2	772201..772824	+	207	148239122	-	SynWH7803_0786	-	hypothetical protein
787	 48.30	-2	772778..774361	+	527	148239123	-	SynWH7803_0787	-	major facilitator superfamily permease
788	 46.52	-2	774361..775626	+	421	148239124	-	SynWH7803_0788	-	hypothetical protein
789	 57.51	0	775606..776643	-	345	148239125	-	SynWH7803_0789	-	glyceraldehyde-3-phosphate dehydrogenase
790	 60.65	0	776911..777990	+	359	148239126	psbA	SynWH7803_0790	-	photosystem II protein D1
791	 61.79	0	778104..778616	+	170	148239127	-	SynWH7803_0791	-	HIT family hydrolase
792	 62.75	0	778625..780820	-	731	148239128	katG	SynWH7803_0792	-	catalase/peroxidase
793	 58.76	0	780927..781457	-	176	148239129	-	SynWH7803_0793	-	hypothetical protein
794	 67.15	+1	781483..782316	-	277	148239130	rbsK	SynWH7803_0794	-	ribokinase family sugar kinase
795	 61.38	0	782321..782887	-	188	148239131	-	SynWH7803_0795	-	hypothetical protein
796	 55.19	-1	782967..783236	-	89	148239132	-	SynWH7803_0796	-	hypothetical protein
797	 58.65	0	783291..783527	-	78	148239133	hli	SynWH7803_0797	-	high light inducible protein
798	 59.48	0	783585..784238	-	217	148239134	nth	SynWH7803_0798	-	endonuclease III
799	 57.22	0	784316..784495	+	59	148239135	-	SynWH7803_0799	-	hypothetical protein
800	 52.86	-1	784503..784712	-	69	148239136	-	SynWH7803_0800	-	hypothetical protein
801	 60.96	0	784811..785038	+	75	148239137	-	SynWH7803_0801	-	hypothetical protein
802	 61.69	0	785035..785556	-	173	148239138	-	SynWH7803_0802	-	hypothetical protein
803	 62.68	0	785553..786329	-	258	148239139	-	SynWH7803_0803	-	hypothetical protein
804	 62.24	0	786443..787978	+	511	148239140	-	SynWH7803_0804	-	carotenoid isomerase
805	 58.89	0	788052..788720	+	222	148239141	-	SynWH7803_0805	-	SAM-dependent methyltransferase
806	 67.97	+1	788703..788933	-	76	148239142	-	SynWH7803_0806	-	hypothetical protein
807	 61.57	0	788961..789509	+	182	148239143	-	SynWH7803_0807	-	hypothetical protein
808	 62.84	0	789506..790210	+	234	148239144	-	SynWH7803_0808	-	nucleoside-diphosphate-sugar epimerase
809	 66.84	+1	790296..791447	+	383	148239145	-	SynWH7803_0809	-	NAD/FAD-dependent oxidoreductase
810	 64.05	0	791741..792160	-	139	148239146	-	SynWH7803_0810	-	hypothetical protein
811	 62.27	0	792185..793117	-	310	148239147	-	SynWH7803_0811	-	hypothetical protein
812	 62.89	0	793179..794501	+	440	148239148	-	SynWH7803_0812	-	Rieske-type iron-sulfur cluster-binding protein
813	 58.52	0	794525..794794	+	89	148239149	-	SynWH7803_0813	-	hypothetical protein
814	 63.45	0	794848..795096	-	82	148239150	-	SynWH7803_0814	-	hypothetical protein
815	 63.04	0	795287..796279	+	330	148239151	-	SynWH7803_0815	-	Zn-dependent alcohol dehydrogenases
816	 63.31	0	796315..797058	+	247	148239152	-	SynWH7803_0816	-	hypothetical protein
817	 65.47	+1	797048..797632	+	194	148239153	-	SynWH7803_0817	-	putative pyridoxamine phosphate oxidase
818	 66.02	+1	797622..798086	-	154	148239154	-	SynWH7803_0818	-	hypothetical protein
819	 60.44	0	798188..798460	+	90	148239155	-	SynWH7803_0819	-	hypothetical protein
820	 65.47	+1	798527..799777	+	416	148239156	-	SynWH7803_0820	-	glutathione S-transferase domain-containing protein
821	 62.04	0	799826..800149	+	107	148239157	-	SynWH7803_0821	-	DnaJ domain-containing protein
822	 62.40	0	800149..801015	+	288	148239158	-	SynWH7803_0822	-	3-hydroxyisobutyrate dehydrogenase related protein
823	 62.96	0	801008..801223	-	71	148239159	hli	SynWH7803_0823	-	high light inducible protein
824	 58.10	0	801307..801726	+	139	148239160	-	SynWH7803_0824	-	hypothetical protein
825	 55.63	0	802004..802474	+	156	148239161	-	SynWH7803_0825	-	hypothetical protein
826	 53.80	-1	802561..802731	+	56	148239162	-	SynWH7803_0826	-	hypothetical protein
827	 54.49	-1	802744..802899	-	51	148239163	-	SynWH7803_0827	-	hypothetical protein
828	 61.79	0	802942..803577	+	211	148239164	-	SynWH7803_0828	-	hypothetical protein
829	 56.19	0	803646..803960	+	104	148239165	-	SynWH7803_0829	-	hypothetical protein
830	 60.57	0	803963..804487	-	174	148239166	-	SynWH7803_0830	-	hypothetical protein
831	 57.62	0	804654..805106	-	150	148239167	-	SynWH7803_0831	-	low molecular weight phosphotyrosine protein phosphatase
832	 62.94	0	805115..805624	-	169	148239168	-	SynWH7803_0832	-	hypothetical protein
833	 57.20	0	805628..805870	-	80	148239169	-	SynWH7803_0833	-	hypothetical protein
834	 59.82	0	806001..806789	+	262	148239170	-	SynWH7803_0834	-	membrane protease subunit
835	 58.86	0	806804..807277	+	157	148239171	-	SynWH7803_0835	-	hypothetical protein
836	 65.54	+1	807274..807450	+	58	148239172	-	SynWH7803_0836	-	hypothetical protein
837	 59.75	0	807549..807707	+	52	148239173	-	SynWH7803_0837	-	hypothetical protein
838	 61.07	0	807692..808084	-	130	148239174	-	SynWH7803_0838	-	hypothetical protein
839	 63.03	0	808207..808371	+	54	148239175	-	SynWH7803_0839	-	hypothetical protein
840	 60.63	0	808437..808751	+	104	148239176	-	SynWH7803_0840	-	hypothetical protein
841	 60.94	0	808765..810231	-	488	148239177	-	SynWH7803_0841	-	hypothetical protein
842	 62.13	0	810346..810918	+	190	148239178	-	SynWH7803_0842	-	hypothetical protein
843	 62.77	0	810934..811164	-	76	148239179	-	SynWH7803_0843	-	hypothetical protein
844	 59.80	0	811219..811422	+	67	148239180	-	SynWH7803_0844	-	hypothetical protein
845	 62.07	0	811434..811607	-	57	148239181	mtnA	SynWH7803_0845	-	metallothionein
846	 59.92	0	811697..812170	-	157	148239182	-	SynWH7803_0846	-	hypothetical protein
847	 61.64	0	812167..812325	-	52	148239183	-	SynWH7803_0847	-	hypothetical protein
848	 63.49	0	812462..812713	+	83	148239184	-	SynWH7803_0848	-	hypothetical protein
849	 61.00	0	812740..813039	+	99	148239185	-	SynWH7803_0849	-	hypothetical protein
850	 63.11	0	813046..813270	-	74	148239186	-	SynWH7803_0850	-	hypothetical protein
851	 67.85	+1	813314..814414	-	366	148239187	-	SynWH7803_0851	-	acyl-CoA dehydrogenase
852	 62.07	0	814414..814848	-	144	148239188	-	SynWH7803_0852	-	hypothetical protein
853	 62.15	0	814925..815101	+	58	148239189	-	SynWH7803_0853	-	hypothetical protein
854	 66.54	+1	815131..815913	-	260	148239190	-	SynWH7803_0854	-	epimerase, PhzC/PhzF-like protein
855	 65.20	+1	815910..816113	-	67	148239191	-	SynWH7803_0855	-	hypothetical protein
856	 63.21	0	816202..816867	+	221	148239192	-	SynWH7803_0856	-	short-chain dehydrogenase/reductase family protein
857	 63.68	0	816884..817654	+	256	148239193	-	SynWH7803_0857	-	DnaJ domain-containing chaperone
858	 65.17	0	817636..818436	-	266	148239194	-	SynWH7803_0858	-	hypothetical protein
859	 64.85	0	818453..818617	-	54	148239195	-	SynWH7803_0859	-	hypothetical protein
860	 56.93	0	818775..819041	+	88	148239196	-	SynWH7803_0860	-	hypothetical protein
861	 57.95	0	819048..819437	-	129	148239197	-	SynWH7803_0861	-	hypothetical protein
862	 60.08	0	819528..820013	+	161	148239198	-	SynWH7803_0862	-	hypothetical protein
863	 62.02	0	820040..820405	-	121	148239199	-	SynWH7803_0863	-	hypothetical protein
864	 59.86	0	820529..820954	+	141	148239200	-	SynWH7803_0864	-	hypothetical protein
865	 61.21	0	820964..821128	+	54	148239201	-	SynWH7803_0865	-	hypothetical protein
866	 68.03	+1	821141..822976	-	611	148239202	ggt	SynWH7803_0866	-	gamma-glutamyltranspeptidase
867	 64.77	0	822975..824606	+	543	148239203	-	SynWH7803_0867	-	zeta-carotene desaturase
868	 64.31	0	824617..825591	+	324	148239204	-	SynWH7803_0868	-	light-dependent protochlorophyllide oxido-reductase
60.32	MEAN

4.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.