IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.32   STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
29	 59.26	0	34586..35611	+	341	148238365	gap1	SynWH7803_0029	-	glyceraldehyde-3-phosphate dehydrogenase
30	 65.45	+1	35675..36661	-	328	148238366	thiL	SynWH7803_0030	-	thiamine monophosphate kinase
31	 60.77	0	36668..37786	-	372	148238367	-	SynWH7803_0031	-	peptidyl-prolyl cis-trans isomerase
32	 57.98	0	37819..38382	+	187	148238368	efp	SynWH7803_0032	-	elongation factor P
33	 59.79	0	38385..38864	+	159	148238369	accB	SynWH7803_0033	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
34	 62.88	0	38851..39879	-	342	148238370	pdxA	SynWH7803_0034	-	4-hydroxythreonine-4-phosphate dehydrogenase
35	 58.33	0	39878..40069	+	63	148238371	-	SynWH7803_0035	-	hypothetical protein
36	 65.26	+1	40035..40961	-	308	148238372	wcaG	SynWH7803_0036	-	nucleoside-diphosphate-sugar epimerase
37	 66.67	+1	41034..41228	+	64	148238373	-	SynWH7803_0037	-	hypothetical protein
38	 54.02	-1	41229..41663	-	144	148238374	-	SynWH7803_0038	-	McrA/HNH family nuclease
39	 64.88	0	41916..43424	+	502	148238375	hepA	SynWH7803_0039	-	SNF2 family DNA/RNA helicase
40	 60.31	0	43379..43771	-	130	148238376	-	SynWH7803_0040	-	hypothetical protein
41	 61.98	0	43771..44175	-	134	148238377	-	SynWH7803_0041	-	hypothetical protein
42	 65.32	+1	44239..44757	-	172	148238378	-	SynWH7803_0042	-	hypothetical protein
43	 57.04	0	44887..45156	+	89	148238379	-	SynWH7803_0043	-	hypothetical protein
44	 56.79	0	45279..45440	+	53	148238380	-	SynWH7803_0044	-	hypothetical protein
45	 56.50	0	45605..45781	+	58	148238381	-	SynWH7803_0045	-	hypothetical protein
46	 62.69	0	45936..47066	-	376	148238382	-	SynWH7803_0046	-	DHSS soluble hydrogenase, small subunit
47	 65.39	+1	47188..48285	+	365	148238383	cbiD	SynWH7803_0047	-	cobalt-precorrin-6A synthase
48	 60.25	0	48299..49918	+	539	148238384	guaA	SynWH7803_0048	-	bifunctional GMP synthase/glutamine amidotransferase protein
49	 60.03	0	49961..50593	+	210	148238385	-	SynWH7803_0049	-	hypothetical protein
50	 64.29	0	50612..50989	+	125	148238386	-	SynWH7803_0050	-	hypothetical protein
51	 63.53	0	50994..52808	+	604	148238387	-	SynWH7803_0051	-	cell division protein FtsI / penicillin-binding protein 2
52	 64.75	0	52818..53966	-	382	148238388	-	SynWH7803_0052	-	glycosyltransferase of family alpha-mannosyltransferase
53	 61.89	0	53980..55173	-	397	148238389	-	SynWH7803_0053	-	sulfolipid biosynthesis protein (UDP-sulfoquinovose synthase)
54	 60.71	0	55232..55399	-	55	148238390	-	SynWH7803_0054	-	HLIP family protein
55	 64.58	0	55500..56312	-	270	148238391	thiG	SynWH7803_0055	-	thiazole synthase
56	 62.50	0	56426..56929	+	167	148238392	-	SynWH7803_0056	-	hypothetical protein
57	 60.61	0	56897..57490	-	197	148238393	-	SynWH7803_0057	-	TPR repeat-containing protein
58	 61.78	0	57525..57872	-	115	148238394	rplT	SynWH7803_0058	-	50S ribosomal protein L20
59	 62.12	0	57916..58113	-	65	148238395	rpmI	SynWH7803_0059	-	50S ribosomal protein L35
60	 68.50	+1	58173..59750	+	525	148238396	-	SynWH7803_0060	-	SpoIID sporulation protein
61	 64.42	0	59781..61115	+	444	148238397	-	SynWH7803_0061	-	glycosyl transferase family protein
62	 67.74	+1	61131..62996	-	621	148238398	dnaX	SynWH7803_0062	-	DNA polymerase III gamma/tau subunit
63	 66.96	+1	63024..63698	-	224	148238399	-	SynWH7803_0063	-	hypothetical protein
64	 62.39	0	63703..65058	-	451	148238400	clpX	SynWH7803_0064	-	ATP-dependent protease ATP-binding subunit
65	 63.48	0	65425..66303	+	292	148238401	-	SynWH7803_0065	-	hypothetical protein
66	 62.15	0	66313..67197	+	294	148238402	-	SynWH7803_0066	-	hypothetical protein
67	 67.22	+1	67241..68863	+	540	148238403	-	SynWH7803_0067	-	monoamine oxidase
68	 66.75	+1	68830..70071	-	413	148238404	-	SynWH7803_0068	-	hypothetical protein
69	 61.95	0	70114..70749	+	211	148238405	-	SynWH7803_0069	-	hypothetical protein
70	 62.46	0	70751..71440	-	229	148238406	clpP	SynWH7803_0070	-	protease subunit of ATP-dependent Clp protease
71	 64.45	0	71487..72932	-	481	148238407	tig	SynWH7803_0071	-	trigger factor
72	 64.24	0	73098..74126	+	342	148238408	asd	SynWH7803_0072	-	aspartate-semialdehyde dehydrogenase
73	 64.91	0	74133..75041	+	302	148238409	dapA	SynWH7803_0073	-	dihydrodipicolinate synthase
74	 65.30	+1	75108..77150	+	680	148238410	-	SynWH7803_0074	-	metallo-beta-lactamase superfamily hydrolase
75	 64.71	0	77153..77818	-	221	148238411	-	SynWH7803_0075	-	hypothetical protein
76	 68.28	+1	77824..78876	-	350	148238412	mesJ	SynWH7803_0076	-	tRNA(Ile)-lysidine synthase
77	 69.76	+1	78916..79692	+	258	148238413	-	SynWH7803_0077	-	hypothetical protein
78	 64.60	0	79755..80141	+	128	148238414	-	SynWH7803_0078	-	hypothetical protein
79	 67.96	+1	80134..80676	+	180	148238415	-	SynWH7803_0079	-	hypothetical protein
80	 61.95	0	80713..82749	+	678	148238416	uvrB	SynWH7803_0080	-	excinuclease ABC subunit B
81	 69.05	+1	82767..84569	-	600	148238417	lysC	SynWH7803_0081	-	aspartate kinase
82	 67.38	+1	84625..85605	-	326	148238418	holA	SynWH7803_0082	-	DNA polymerase III subunit delta
83	 71.23	+2	85674..86309	+	211	148238419	cobH	SynWH7803_0083	-	precorrin-8X methylmutase
84	 69.01	+1	86294..89026	-	910	148238420	mutS	SynWH7803_0084	-	DNA mismatch repair protein
85	 46.15	-2	89122..90003	-	293	148238421	-	SynWH7803_0085	-	hypothetical protein
86	 64.70	0	90026..90940	-	304	148238422	-	SynWH7803_0086	-	hypothetical protein
87	 60.32	0	91067..91255	+	62	148238423	psbZ	SynWH7803_0087	-	photosystem II reaction center protein Z
88	 60.08	0	91288..91773	+	161	148238424	ribH	SynWH7803_0088	-	riboflavin synthase subunit beta
89	 37.97	-2	91897..93081	+	394	148238425	-	SynWH7803_0089	-	hypothetical protein
90	 38.81	-2	93071..93910	-	279	148238426	-	SynWH7803_0090	-	glycosyltransferase
91	 39.77	-2	93911..94438	-	175	148238427	-	SynWH7803_0091	-	hypothetical protein
92	 42.23	-2	94448..95503	-	351	148238428	galE	SynWH7803_0092	-	UDP-glucose-4-epimerase
93	 32.85	-2	95561..96175	-	204	148238429	-	SynWH7803_0093	-	hypothetical protein
94	 33.20	-2	96399..97148	-	249	148238430	-	SynWH7803_0094	-	hypothetical protein
95	 33.23	-2	97155..98078	-	307	148238431	-	SynWH7803_0095	-	hypothetical protein
96	 34.26	-2	98537..99292	-	251	148238432	-	SynWH7803_0096	-	hypothetical protein
97	 37.76	-2	100017..100739	-	240	148238433	-	SynWH7803_0097	-	hypothetical protein
98	 66.67	+1	101009..101464	-	151	148238434	-	SynWH7803_0098	-	acetyltransferase
99	 67.77	+1	101493..102401	-	302	148238435	-	SynWH7803_0099	-	hypothetical protein
100	 67.27	+1	102513..102677	+	54	148238436	-	SynWH7803_0100	-	hypothetical protein
101	 65.15	0	102623..102820	+	65	148238437	-	SynWH7803_0101	-	hypothetical protein
102	 66.03	+1	102879..103820	+	313	148238438	-	SynWH7803_0102	-	glucose-1-phosphate thymidylyltransferase
103	 67.15	+1	103810..104427	+	205	148238439	rfbC	SynWH7803_0103	-	dTDP-4-dehydrorhamnose 3,5-epimerase
104	 71.40	+2	104424..105311	+	295	148238440	rfbD	SynWH7803_0104	-	putative dTDP-4-dehydrorhamnose reductase
105	 67.70	+1	105304..106653	+	449	148238441	-	SynWH7803_0105	-	sugar transferase
106	 57.03	0	106766..108073	+	435	148238442	-	SynWH7803_0106	-	Zn-dependent metalloprotease
107	 56.98	0	108146..109177	+	343	148238443	rfbB	SynWH7803_0107	-	dTDP-glucose-4,6-dehydratase
108	 45.27	-2	109338..109940	+	200	148238444	-	SynWH7803_0108	-	hypothetical protein
109	 46.70	-2	110048..111349	-	433	148238445	-	SynWH7803_0109	-	hypothetical protein
110	 54.51	-1	111312..111599	-	95	148238446	-	SynWH7803_0110	-	N-terminal part of GDP-fucose synthetase
111	 53.71	-1	111813..117053	-	1746	148238447	-	SynWH7803_0111	-	atypical alkaline phosphatase with phytase-like insertion
112	 47.02	-2	117737..118072	-	111	148238448	-	SynWH7803_0112	-	hypothetical protein
113	 60.47	0	118383..119414	-	343	148238449	wcaG	SynWH7803_0113	-	GDP-L fucose synthetase
114	 61.17	0	119419..120510	-	363	148238450	gmd	SynWH7803_0114	-	GDP-mannose 4,6-dehydratase
115	 64.47	0	120544..121770	-	408	148238451	-	SynWH7803_0115	-	glycosyl transferase family protein
116	 59.61	0	121767..122984	-	405	148238452	-	SynWH7803_0116	-	TPR repeat-containing protein
117	 54.91	-1	123150..123923	+	257	148238453	-	SynWH7803_0117	-	hypothetical protein
118	 59.85	0	123916..124854	+	312	148238454	-	SynWH7803_0118	-	glycosyltransferase family protein
119	 57.69	0	124866..126068	+	400	148238455	-	SynWH7803_0119	-	glycosyl transferase family protein
120	 55.41	-1	126335..127276	+	313	148238456	-	SynWH7803_0120	-	hypothetical protein
121	 56.65	0	127295..128512	+	405	148238457	-	SynWH7803_0121	-	glycosyl transferase family protein
122	 52.52	-1	128570..130174	+	534	148238458	-	SynWH7803_0122	-	hypothetical protein
123	 54.54	-1	129916..133428	+	1170	148238459	-	SynWH7803_0123	-	hypothetical protein
124	 58.06	0	133554..135644	+	696	148238460	-	SynWH7803_0124	-	glycosyl transferase family protein
125	 58.59	0	135608..137773	-	721	148238461	-	SynWH7803_0125	-	glycosyl transferase family protein
126	 59.46	0	137775..139523	+	582	148238462	-	SynWH7803_0126	-	TPR repeat-containing protein
127	 58.59	0	139590..140270	+	226	148238463	-	SynWH7803_0127	-	hypothetical protein
128	 53.80	-1	140267..143281	+	1004	148238464	-	SynWH7803_0128	-	ABC-type multidrug transport system, ATPase and permease components
60.32	MEAN

4.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.