IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.32   STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
718	 60.05	0	710045..711163	-	372	148239054	-	SynWH7803_0718	-	Ca2+/Na+ antiporter
719	 58.74	0	711266..712942	+	558	148239055	-	SynWH7803_0719	-	MFS superfamily sulfate permease
720	 58.24	0	712946..714037	+	363	148239056	pyrC	SynWH7803_0720	-	dihydroorotase
721	 57.79	0	714069..714530	+	153	148239057	-	SynWH7803_0721	-	hypothetical protein
722	 57.08	0	714620..715495	+	291	148239058	-	SynWH7803_0722	-	gluconolactonase
723	 54.41	-1	715512..715772	+	86	148239059	-	SynWH7803_0723	-	hypothetical protein
724	 63.95	0	715777..716217	+	146	148239060	-	SynWH7803_0724	-	hypothetical protein
725	 57.66	0	716192..716968	-	258	148239061	gdh	SynWH7803_0725	-	glucose 1-dehydrogenase
726	 60.25	0	717132..717941	+	269	148239062	-	SynWH7803_0726	-	hypothetical protein
727	 57.93	0	718060..718494	+	144	148239063	-	SynWH7803_0727	-	hypothetical protein
728	 57.85	0	718495..720093	-	532	148239064	-	SynWH7803_0728	-	flavoprotein related to choline dehydrogenase
729	 58.55	0	720182..722878	-	898	148239065	-	SynWH7803_0729	-	hypothetical protein
730	 55.69	0	723112..723357	+	81	148239066	ictA	SynWH7803_0730	-	inorganic carbon transport protein, IctA
731	 58.11	0	723377..723715	+	112	148239067	-	SynWH7803_0731	-	hypothetical protein
732	 58.08	0	723747..724550	+	267	148239068	trpA	SynWH7803_0732	-	tryptophan synthase subunit alpha
733	 55.65	0	724554..724925	-	123	148239069	-	SynWH7803_0733	-	hypothetical protein
734	 53.70	-1	725020..725289	+	89	148239070	-	SynWH7803_0734	-	YciI-like protein
735	 57.66	0	725265..725597	-	110	148239071	petJ	SynWH7803_0735	-	cytochrome C6
736	 55.28	-1	725621..725866	-	81	148239072	-	SynWH7803_0736	-	hypothetical protein
737	 59.96	0	725952..726518	+	188	148239073	-	SynWH7803_0737	-	hypothetical protein
738	 56.33	0	726376..726936	-	186	148239074	-	SynWH7803_0738	-	hypothetical protein
739	 60.00	0	726942..727196	-	84	148239075	-	SynWH7803_0739	-	hypothetical protein
740	 64.64	0	727238..727582	-	114	148239076	-	SynWH7803_0740	-	hypothetical protein
741	 61.78	0	727579..727926	-	115	148239077	-	SynWH7803_0741	-	hypothetical protein
742	 56.63	0	728021..728947	-	308	148239078	rpoD	SynWH7803_0742	-	RNA polymerase sigma factor, sigma-70 family
743	 60.98	0	729195..729686	+	163	148239079	-	SynWH7803_0743	-	hypothetical protein
744	 67.43	+1	729699..730355	+	218	148239080	-	SynWH7803_0744	-	Zn-dependent protease
745	 61.65	0	730486..731163	+	225	148239081	-	SynWH7803_0745	-	hypothetical protein
746	 63.44	0	731160..731840	-	226	148239082	hisIE	SynWH7803_0746	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
747	 62.08	0	731909..732409	+	166	148239083	-	SynWH7803_0747	-	6-pyruvoyl tetrahydropterin synthase
748	 62.38	0	732369..734537	-	722	148239084	clpB	SynWH7803_0748	-	chaperone ClpB
749	 62.58	0	734497..734985	-	162	148239085	-	SynWH7803_0749	-	endopeptidase Clp ATP-binding chain B
750	 62.04	0	735127..735342	+	71	148239086	-	SynWH7803_0750	-	hypothetical protein
751	 56.72	0	735347..735547	-	66	148239087	-	SynWH7803_0751	-	hypothetical protein
752	 59.78	0	735544..735906	-	120	148239088	petJ	SynWH7803_0752	-	cytochrome C6
753	 57.78	0	736040..736399	-	119	148239089	petE	SynWH7803_0753	-	plastocyanin
754	 61.73	0	736434..737426	-	330	148239090	-	SynWH7803_0754	-	nucleoside-diphosphate-sugar epimerase
755	 62.13	0	737437..738495	-	352	148239091	hemE	SynWH7803_0755	-	uroporphyrinogen decarboxylase
756	 58.44	0	738615..740900	-	761	148239092	-	SynWH7803_0756	-	glycogen branching enzyme
757	 60.98	0	740979..741734	-	251	148239093	-	SynWH7803_0757	-	hypothetical protein
758	 63.55	0	741749..743353	-	534	148239094	-	SynWH7803_0758	-	acyl esterase
759	 62.20	0	743343..743588	-	81	148239095	-	SynWH7803_0759	-	hypothetical protein
760	 63.95	0	743709..744113	-	134	148239096	-	SynWH7803_0760	-	hypothetical protein
761	 64.41	0	744110..744553	-	147	148239097	-	SynWH7803_0761	-	hypothetical protein
762	 63.82	0	744618..749048	+	1476	148239098	-	SynWH7803_0762	-	hypothetical protein
763	 65.66	+1	749052..749942	+	296	148239099	-	SynWH7803_0763	-	ROK family protein
764	 64.30	0	750013..751320	+	435	148239100	proA	SynWH7803_0764	-	gamma-glutamyl phosphate reductase
765	 59.23	0	751320..751709	+	129	148239101	folB	SynWH7803_0765	-	dihydroneopterin aldolase
766	 60.71	0	751711..752331	+	206	148239102	-	SynWH7803_0766	-	lipase family protein
767	 54.31	-1	752400..753095	+	231	148239103	-	SynWH7803_0767	-	hypothetical protein
768	 58.65	0	753103..753651	+	182	148239104	-	SynWH7803_0768	-	hypothetical protein
769	 57.99	0	753651..754745	+	364	148239105	-	SynWH7803_0769	-	hypothetical protein
770	 61.35	0	754735..756201	-	488	148239106	-	SynWH7803_0770	-	hypothetical protein
771	 62.32	0	756222..758339	-	705	148239107	prlC	SynWH7803_0771	-	oligopeptidase A
772	 59.92	0	758346..759917	-	523	148239108	ndhD	SynWH7803_0772	-	NAD(P)H-quinone oxidoreductase subunit 4
773	 64.45	0	759974..760921	-	315	148239109	thrB	SynWH7803_0773	-	homoserine kinase
774	 64.07	0	760936..762012	-	358	148239110	glk	SynWH7803_0774	-	glucokinase
775	 64.05	0	762102..762521	-	139	148239111	-	SynWH7803_0775	-	hypothetical protein
776	 61.92	0	762521..764353	-	610	148239112	thrS	SynWH7803_0776	-	threonyl-tRNA synthetase
777	 64.15	0	764382..764699	+	105	148239113	-	SynWH7803_0777	-	hypothetical protein
778	 62.88	0	764696..765091	+	131	148239114	-	SynWH7803_0778	-	hypothetical protein
779	 63.62	0	765098..765721	-	207	148239115	-	SynWH7803_0779	-	muramidase
780	 61.93	0	766037..767050	-	337	148239116	trpS	SynWH7803_0780	-	tryptophanyl-tRNA synthetase
781	 67.98	+1	767054..767587	-	177	148239117	-	SynWH7803_0781	-	hypothetical protein
782	 60.15	0	767692..768597	-	301	148239118	-	SynWH7803_0782	-	Co/Zn/Cd cation transporter
783	 63.21	0	768751..770109	+	452	148239119	-	SynWH7803_0783	-	hypothetical protein
784	 58.77	0	770274..771350	+	358	148239120	psbA	SynWH7803_0784	-	photosystem II protein D1
785	 51.42	-1	771442..772110	-	222	148239121	-	SynWH7803_0785	-	hypothetical protein
786	 48.72	-2	772201..772824	+	207	148239122	-	SynWH7803_0786	-	hypothetical protein
787	 48.30	-2	772778..774361	+	527	148239123	-	SynWH7803_0787	-	major facilitator superfamily permease
788	 46.52	-2	774361..775626	+	421	148239124	-	SynWH7803_0788	-	hypothetical protein
789	 57.51	0	775606..776643	-	345	148239125	-	SynWH7803_0789	-	glyceraldehyde-3-phosphate dehydrogenase
790	 60.65	0	776911..777990	+	359	148239126	psbA	SynWH7803_0790	-	photosystem II protein D1
791	 61.79	0	778104..778616	+	170	148239127	-	SynWH7803_0791	-	HIT family hydrolase
792	 62.75	0	778625..780820	-	731	148239128	katG	SynWH7803_0792	-	catalase/peroxidase
793	 58.76	0	780927..781457	-	176	148239129	-	SynWH7803_0793	-	hypothetical protein
794	 67.15	+1	781483..782316	-	277	148239130	rbsK	SynWH7803_0794	-	ribokinase family sugar kinase
795	 61.38	0	782321..782887	-	188	148239131	-	SynWH7803_0795	-	hypothetical protein
796	 55.19	-1	782967..783236	-	89	148239132	-	SynWH7803_0796	-	hypothetical protein
797	 58.65	0	783291..783527	-	78	148239133	hli	SynWH7803_0797	-	high light inducible protein
798	 59.48	0	783585..784238	-	217	148239134	nth	SynWH7803_0798	-	endonuclease III
799	 57.22	0	784316..784495	+	59	148239135	-	SynWH7803_0799	-	hypothetical protein
800	 52.86	-1	784503..784712	-	69	148239136	-	SynWH7803_0800	-	hypothetical protein
801	 60.96	0	784811..785038	+	75	148239137	-	SynWH7803_0801	-	hypothetical protein
802	 61.69	0	785035..785556	-	173	148239138	-	SynWH7803_0802	-	hypothetical protein
803	 62.68	0	785553..786329	-	258	148239139	-	SynWH7803_0803	-	hypothetical protein
804	 62.24	0	786443..787978	+	511	148239140	-	SynWH7803_0804	-	carotenoid isomerase
805	 58.89	0	788052..788720	+	222	148239141	-	SynWH7803_0805	-	SAM-dependent methyltransferase
806	 67.97	+1	788703..788933	-	76	148239142	-	SynWH7803_0806	-	hypothetical protein
807	 61.57	0	788961..789509	+	182	148239143	-	SynWH7803_0807	-	hypothetical protein
808	 62.84	0	789506..790210	+	234	148239144	-	SynWH7803_0808	-	nucleoside-diphosphate-sugar epimerase
809	 66.84	+1	790296..791447	+	383	148239145	-	SynWH7803_0809	-	NAD/FAD-dependent oxidoreductase
810	 64.05	0	791741..792160	-	139	148239146	-	SynWH7803_0810	-	hypothetical protein
811	 62.27	0	792185..793117	-	310	148239147	-	SynWH7803_0811	-	hypothetical protein
812	 62.89	0	793179..794501	+	440	148239148	-	SynWH7803_0812	-	Rieske-type iron-sulfur cluster-binding protein
813	 58.52	0	794525..794794	+	89	148239149	-	SynWH7803_0813	-	hypothetical protein
814	 63.45	0	794848..795096	-	82	148239150	-	SynWH7803_0814	-	hypothetical protein
815	 63.04	0	795287..796279	+	330	148239151	-	SynWH7803_0815	-	Zn-dependent alcohol dehydrogenases
816	 63.31	0	796315..797058	+	247	148239152	-	SynWH7803_0816	-	hypothetical protein
817	 65.47	+1	797048..797632	+	194	148239153	-	SynWH7803_0817	-	putative pyridoxamine phosphate oxidase
60.32	MEAN

4.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.